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Items: 27

1.

NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis.

Yakhnin H, Yakhnin AV, Mouery BL, Mandell ZF, Karbasiafshar C, Kashlev M, Babitzke P.

mBio. 2019 Nov 12;10(6). pii: e02665-19. doi: 10.1128/mBio.02665-19.

2.

Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli.

Pourciau C, Pannuri A, Potts A, Yakhnin H, Babitzke P, Romeo T.

mBio. 2019 Aug 6;10(4). pii: e01034-19. doi: 10.1128/mBio.01034-19.

3.

Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics.

Potts AH, Vakulskas CA, Pannuri A, Yakhnin H, Babitzke P, Romeo T.

Nat Commun. 2017 Nov 17;8(1):1596. doi: 10.1038/s41467-017-01613-1.

4.

Circuitry Linking the Global Csr- and σE-Dependent Cell Envelope Stress Response Systems.

Yakhnin H, Aichele R, Ades SE, Romeo T, Babitzke P.

J Bacteriol. 2017 Oct 31;199(23). pii: e00484-17. doi: 10.1128/JB.00484-17. Print 2017 Dec 1.

5.

Translational Repression of the RpoS Antiadapter IraD by CsrA Is Mediated via Translational Coupling to a Short Upstream Open Reading Frame.

Park H, McGibbon LC, Potts AH, Yakhnin H, Romeo T, Babitzke P.

mBio. 2017 Aug 29;8(4). pii: e01355-17. doi: 10.1128/mBio.01355-17.

6.

FliW antagonizes CsrA RNA binding by a noncompetitive allosteric mechanism.

Mukherjee S, Oshiro RT, Yakhnin H, Babitzke P, Kearns DB.

Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9870-5. doi: 10.1073/pnas.1602455113. Epub 2016 Aug 11.

7.

CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation of pnp Transcripts That Have Been Previously Processed by RNase III and PNPase.

Park H, Yakhnin H, Connolly M, Romeo T, Babitzke P.

J Bacteriol. 2015 Dec;197(24):3751-9. doi: 10.1128/JB.00721-15. Epub 2015 Oct 5.

8.

Ribosomal protein L10(L12)4 autoregulates expression of the Bacillus subtilis rplJL operon by a transcription attenuation mechanism.

Yakhnin H, Yakhnin AV, Babitzke P.

Nucleic Acids Res. 2015 Aug 18;43(14):7032-43. doi: 10.1093/nar/gkv628. Epub 2015 Jun 22.

9.

csrR, a Paralog and Direct Target of CsrA, Promotes Legionella pneumophila Resilience in Water.

Abbott ZD, Yakhnin H, Babitzke P, Swanson MS.

mBio. 2015 Jun 9;6(3):e00595. doi: 10.1128/mBio.00595-15.

10.

CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage.

Yakhnin AV, Baker CS, Vakulskas CA, Yakhnin H, Berezin I, Romeo T, Babitzke P.

Mol Microbiol. 2013 Feb;87(4):851-66. doi: 10.1111/mmi.12136. Epub 2013 Jan 11.

11.

Dual posttranscriptional regulation via a cofactor-responsive mRNA leader.

Patterson-Fortin LM, Vakulskas CA, Yakhnin H, Babitzke P, Romeo T.

J Mol Biol. 2013 Oct 9;425(19):3662-77. doi: 10.1016/j.jmb.2012.12.010. Epub 2012 Dec 28.

12.

Gel mobility shift assays to detect protein-RNA interactions.

Yakhnin AV, Yakhnin H, Babitzke P.

Methods Mol Biol. 2012;905:201-11. doi: 10.1007/978-1-61779-949-5_12.

13.

Translational repression of NhaR, a novel pathway for multi-tier regulation of biofilm circuitry by CsrA.

Pannuri A, Yakhnin H, Vakulskas CA, Edwards AN, Babitzke P, Romeo T.

J Bacteriol. 2012 Jan;194(1):79-89. doi: 10.1128/JB.06209-11. Epub 2011 Oct 28.

14.

CsrA represses translation of sdiA, which encodes the N-acylhomoserine-L-lactone receptor of Escherichia coli, by binding exclusively within the coding region of sdiA mRNA.

Yakhnin H, Baker CS, Berezin I, Evangelista MA, Rassin A, Romeo T, Babitzke P.

J Bacteriol. 2011 Nov;193(22):6162-70. doi: 10.1128/JB.05975-11. Epub 2011 Sep 9.

15.

CsrA-FliW interaction governs flagellin homeostasis and a checkpoint on flagellar morphogenesis in Bacillus subtilis.

Mukherjee S, Yakhnin H, Kysela D, Sokoloski J, Babitzke P, Kearns DB.

Mol Microbiol. 2011 Oct;82(2):447-61. doi: 10.1111/j.1365-2958.2011.07822.x. Epub 2011 Sep 19.

16.

Complex regulation of the global regulatory gene csrA: CsrA-mediated translational repression, transcription from five promoters by Eσ⁷⁰ and Eσ(S), and indirect transcriptional activation by CsrA.

Yakhnin H, Yakhnin AV, Baker CS, Sineva E, Berezin I, Romeo T, Babitzke P.

Mol Microbiol. 2011 Aug;81(3):689-704. doi: 10.1111/j.1365-2958.2011.07723.x. Epub 2011 Jun 23.

17.

Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI-1 and SPI-2 virulence regulons through HilD.

Martínez LC, Yakhnin H, Camacho MI, Georgellis D, Babitzke P, Puente JL, Bustamante VH.

Mol Microbiol. 2011 Jun;80(6):1637-56. doi: 10.1111/j.1365-2958.2011.07674.x. Epub 2011 May 12.

18.

Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader.

Yakhnin AV, Yakhnin H, Babitzke P.

Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16131-6. doi: 10.1073/pnas.0808842105. Epub 2008 Oct 13.

19.

CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding.

Yakhnin H, Pandit P, Petty TJ, Baker CS, Romeo T, Babitzke P.

Mol Microbiol. 2007 Jun;64(6):1605-20.

20.

CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence.

Baker CS, Eöry LA, Yakhnin H, Mercante J, Romeo T, Babitzke P.

J Bacteriol. 2007 Aug;189(15):5472-81. Epub 2007 May 25.

22.
25.

Gene replacement method for determining conditions in which Bacillus subtilis genes are essential or dispensable for cell viability.

Yakhnin H, Babitzke P.

Appl Microbiol Biotechnol. 2004 Apr;64(3):382-6. Epub 2003 Dec 9.

PMID:
14663629
27.

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