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New Optical Manipulation of Relativistic Vortex Cutter.

Wang WP, Jiang C, Shen BF, Yuan F, Gan ZM, Zhang H, Zhai SH, Xu ZZ.

Phys Rev Lett. 2019 Jan 18;122(2):024801. doi: 10.1103/PhysRevLett.122.024801.


Calour: an Interactive, Microbe-Centric Analysis Tool.

Xu ZZ, Amir A, Sanders J, Zhu Q, Morton JT, Bletz MC, Tripathi A, Huang S, McDonald D, Jiang L, Knight R.

mSystems. 2019 Jan 29;4(1). pii: e00269-18. doi: 10.1128/mSystems.00269-18. eCollection 2019 Jan-Feb.


[Correlation studies of distinct mutational signatures with common cancer pathological subtyping].

Shi Y, Xu ZZ, Lu H, Ci WM.

Yi Chuan. 2018 Nov 20;40(11):1033-1038. doi: 10.16288/j.yczz.18-208. Chinese.


Aromatic hydrocarbon receptor provides a link between smoking and rheumatoid arthritis in peripheral blood mononuclear cells.

Cheng L, Qian L, Xu ZZ, Tan Y, Luo CY.

Clin Exp Rheumatol. 2018 Oct 22. [Epub ahead of print]


Identification of new high affinity targets for Roquin based on structural conservation.

Braun J, Fischer S, Xu ZZ, Sun H, Ghoneim DH, Gimbel AT, Plessmann U, Urlaub H, Mathews DH, Weigand JE.

Nucleic Acids Res. 2018 Dec 14;46(22):12109-12125. doi: 10.1093/nar/gky908.


Unicentric Castleman disease presenting as a retroperitoneal peripancreatic mass: A report of two cases and review of literature.

Cheng JL, Cui J, Wang Y, Xu ZZ, Liu F, Liang SB, Tian H.

World J Gastroenterol. 2018 Sep 14;24(34):3958-3964. doi: 10.3748/wjg.v24.i34.3958. Review.


Long-term outcomes and quality of life following ligation of the intersphincteric fistula tract for high transsphincteric fistulas.

Sun XL, Wen K, Chen YH, Xu ZZ, Wang XP.

Colorectal Dis. 2019 Jan;21(1):30-37. doi: 10.1111/codi.14405. Epub 2018 Nov 21.


Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus).

Minich JJ, Zhu Q, Xu ZZ, Amir A, Ngochera M, Simwaka M, Allen EE, Zidana H, Knight R.

Microbiologyopen. 2018 Dec;7(6):e00716. doi: 10.1002/mbo3.716. Epub 2018 Aug 31.


Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.

Zarrinpar A, Chaix A, Xu ZZ, Chang MW, Marotz CA, Saghatelian A, Knight R, Panda S.

Nat Commun. 2018 Jul 20;9(1):2872. doi: 10.1038/s41467-018-05336-9.


GPR37 regulates macrophage phagocytosis and resolution of inflammatory pain.

Bang S, Xie YK, Zhang ZJ, Wang Z, Xu ZZ, Ji RR.

J Clin Invest. 2018 Aug 1;128(8):3568-3582. doi: 10.1172/JCI99888. Epub 2018 Jul 16.


RIPK4 promotes bladder urothelial carcinoma cell aggressiveness by upregulating VEGF-A through the NF-κB pathway.

Liu JY, Zeng QH, Cao PG, Xie D, Chen X, Yang F, He LY, Dai YB, Li JJ, Liu XM, Zeng HL, Zhu YX, Gong L, Cheng Y, Zhou JD, Hu J, Bo H, Xu ZZ, Cao K.

Br J Cancer. 2018 Jun;118(12):1617-1627. doi: 10.1038/s41416-018-0116-8. Epub 2018 Jun 5.


Best practices for analysing microbiomes.

Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC.

Nat Rev Microbiol. 2018 Jul;16(7):410-422. doi: 10.1038/s41579-018-0029-9. Review.


Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

Michaud JM, Thompson LR, Kaul D, Espinoza JL, Richter RA, Xu ZZ, Lee C, Pham KM, Beall CM, Malfatti F, Azam F, Knight R, Burkart MD, Dupont CL, Prather KA.

Nat Commun. 2018 May 22;9(1):2017. doi: 10.1038/s41467-018-04409-z.


Magnetic resonance imaging findings for differential diagnosis of perianal plexiform schwannoma: Case report and review of the literature.

Sun XL, Wen K, Xu ZZ, Wang XP.

World J Clin Cases. 2018 May 16;6(5):88-93. doi: 10.12998/wjcc.v6.i5.88.


Distinct Analgesic Actions of DHA and DHA-Derived Specialized Pro-Resolving Mediators on Post-operative Pain After Bone Fracture in Mice.

Zhang L, Terrando N, Xu ZZ, Bang S, Jordt SE, Maixner W, Serhan CN, Ji RR.

Front Pharmacol. 2018 May 1;9:412. doi: 10.3389/fphar.2018.00412. eCollection 2018.


Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

Janssen S, McDonald D, Gonzalez A, Navas-Molina JA, Jiang L, Xu ZZ, Winker K, Kado DM, Orwoll E, Manary M, Mirarab S, Knight R.

mSystems. 2018 Apr 17;3(3). pii: e00021-18. doi: 10.1128/mSystems.00021-18. eCollection 2018 May-Jun.


Exposure to toxic metals triggers unique responses from the rat gut microbiota.

Richardson JB, Dancy BCR, Horton CL, Lee YS, Madejczyk MS, Xu ZZ, Ackermann G, Humphrey G, Palacios G, Knight R, Lewis JA.

Sci Rep. 2018 Apr 26;8(1):6578. doi: 10.1038/s41598-018-24931-w.


[Response of radial growth of Pinus koraiensis and Picea jezoensis to climate change in Xiao-xing'anling Mountains, Northeast China].

Yu J, Liu QJ, Zhou G, Meng SW, Zhou H, Xu ZZ, Shi JN, Du WX.

Ying Yong Sheng Tai Xue Bao. 2017 Nov;28(11):3451-3460. doi: 10.13287/j.1001-9332.201711.008. Chinese.


SPAG5 promotes proliferation and suppresses apoptosis in bladder urothelial carcinoma by upregulating Wnt3 via activating the AKT/mTOR pathway and predicts poorer survival.

Liu JY, Zeng QH, Cao PG, Xie D, Yang F, He LY, Dai YB, Li JJ, Liu XM, Zeng HL, Fan XJ, Liu L, Zhu YX, Gong L, Cheng Y, Zhou JD, Hu J, Bo H, Xu ZZ, Cao K.

Oncogene. 2018 Jul;37(29):3937-3952. doi: 10.1038/s41388-018-0223-2. Epub 2018 Apr 17.


DNA Methylation and Uveal Melanoma.

Yang ZK, Yang JY, Xu ZZ, Yu WH.

Chin Med J (Engl). 2018 Apr 5;131(7):845-851. doi: 10.4103/0366-6999.228229. Review.


Efficacy and safety of American ginseng (Panax quinquefolius L.) extract on glycemic control and cardiovascular risk factors in individuals with type 2 diabetes: a double-blind, randomized, cross-over clinical trial.

Vuksan V, Xu ZZ, Jovanovski E, Jenkins AL, Beljan-Zdravkovic U, Sievenpiper JL, Mark Stavro P, Zurbau A, Duvnjak L, Li MZC.

Eur J Nutr. 2018 Feb 24. doi: 10.1007/s00394-018-1642-0. [Epub ahead of print]


Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models.

Belk A, Xu ZZ, Carter DO, Lynne A, Bucheli S, Knight R, Metcalf JL.

Genes (Basel). 2018 Feb 16;9(2). pii: E104. doi: 10.3390/genes9020104.


Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction.

Zhou Y, Xu ZZ, He Y, Yang Y, Liu L, Lin Q, Nie Y, Li M, Zhi F, Liu S, Amir A, González A, Tripathi A, Chen M, Wu GD, Knight R, Zhou H, Chen Y.

mSystems. 2018 Jan 30;3(1). pii: e00188-17. doi: 10.1128/mSystems.00188-17. eCollection 2018 Jan-Feb.


Effect of combined epidural anaesthesia on tumor-infiltrating lymphocytes in lung adenocarcinoma: a prospective exploratory sub-analysis.

Li MH, Xu ZZ, Huang SM, Li T, Li XY, Wang DX.

Acta Anaesthesiol Scand. 2018 May;62(5):687-700. doi: 10.1111/aas.13068. Epub 2018 Jan 23.


Application of liquid semen technology under the seasonal dairy production system in New Zealand.

Yang DH, Standley NT, Xu ZZ.

Anim Reprod Sci. 2018 Jul;194:2-10. doi: 10.1016/j.anireprosci.2018.01.004. Epub 2018 Jan 16. Review.


Helper-Dependent Chain Reaction (HDCR) for Selective Amplification of Methylated DNA Sequences.

Mitchell SM, Rand KN, Xu ZZ, Ho T, Brown GS, Ross JP, Molloy PL.

Methods Mol Biol. 2018;1708:587-601. doi: 10.1007/978-1-4939-7481-8_30.


Collisionless Shock Acceleration of High-Flux Quasimonoenergetic Proton Beams Driven by Circularly Polarized Laser Pulses.

Zhang H, Shen BF, Wang WP, Zhai SH, Li SS, Lu XM, Li JF, Xu RJ, Wang XL, Liang XY, Leng YX, Li RX, Xu ZZ.

Phys Rev Lett. 2017 Oct 20;119(16):164801. doi: 10.1103/PhysRevLett.119.164801. Epub 2017 Oct 17.


Guiding longitudinal sampling in IBD cohorts.

Vázquez-Baeza Y, Gonzalez A, Xu ZZ, Washburne A, Herfarth HH, Sartor RB, Knight R.

Gut. 2018 Sep;67(9):1743-1745. doi: 10.1136/gutjnl-2017-315352. Epub 2017 Oct 21. No abstract available.


Pathway-based discovery of genetic interactions in breast cancer.

Wang W, Xu ZZ, Costanzo M, Boone C, Lange CA, Myers CL.

PLoS Genet. 2017 Sep 28;13(9):e1006973. doi: 10.1371/journal.pgen.1006973. eCollection 2017 Sep.


Clinical significance of chemokine receptor CXCR4 and mammalian target of rapamycin (mTOR) expression in patients with diffuse large B-cell lymphoma.

Xu ZZ, Shen JK, Zhao SQ, Li JM.

Leuk Lymphoma. 2018 Jun;59(6):1451-1460. doi: 10.1080/10428194.2017.1379077. Epub 2017 Sep 27.


HSP70-Hrd1 axis precludes the oncorepressor potential of N-terminal misfolded Blimp-1s in lymphoma cells.

Wang WF, Yan L, Liu Z, Liu LX, Lin J, Liu ZY, Chen XP, Zhang W, Xu ZZ, Shi T, Li JM, Zhao YL, Meng G, Xia Y, Li JY, Zhu J.

Nat Commun. 2017 Aug 25;8(1):363. doi: 10.1038/s41467-017-00476-w.


[Clinical Significance of Corrected Serum Calcium in 320 Patients with Multiple Myeloma].

Xu ZZ, Wu SQ, Wang QQ, Ye YM, Ma XM, Zhan R.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2017 Aug;25(4):1058-1062. doi: 10.7534/j.issn.1009-2137.2017.04.017. Chinese.


Microbiome Tools for Forensic Science.

Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R.

Trends Biotechnol. 2017 Sep;35(9):814-823. doi: 10.1016/j.tibtech.2017.03.006. Epub 2017 Mar 30. Review.


Solute carrier family 12 member 5 promotes tumor invasion/metastasis of bladder urothelial carcinoma by enhancing NF-κB/MMP-7 signaling pathway.

Liu JY, Dai YB, Li X, Cao K, Xie D, Tong ZT, Long Z, Xiao H, Chen MK, Ye YL, Liu B, Tan J, Tang J, Xu ZZ, Gan Y, Zhou YH, Deng F, He LY.

Cell Death Dis. 2017 Mar 23;8(3):e2691. doi: 10.1038/cddis.2017.118.


Normalization and microbial differential abundance strategies depend upon data characteristics.

Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R.

Microbiome. 2017 Mar 3;5(1):27. doi: 10.1186/s40168-017-0237-y.


Rapid Detection of Atrazine at Workplace with Near-Infrared Spectroscopy.

Zhou XF, Song XZ, Fu ZH, Zhao P, Xu ZZ, Tang SC.

Guang Pu Xue Yu Guang Pu Fen Xi. 2017 Mar;37(3):755-9. Chinese, English.


Sesquiterpenoids from the twigs and leaves of Fokienia hodginsii.

Wu XD, Zhong WW, Ding LF, Tu WC, Yang H, Gong X, Peng LY, Li Y, Xu ZZ, Zhao QS.

J Asian Nat Prod Res. 2017 Jul;19(7):666-672. doi: 10.1080/10286020.2016.1247350. Epub 2016 Dec 17.


Evaluation of Methylation Biomarkers for Detection of Circulating Tumor DNA and Application to Colorectal Cancer.

Mitchell SM, Ho T, Brown GS, Baker RT, Thomas ML, McEvoy A, Xu ZZ, Ross JP, Lockett TJ, Young GP, LaPointe LC, Pedersen SK, Molloy PL.

Genes (Basel). 2016 Dec 15;7(12). pii: E125.


Interindividual Heterogeneity of Hypoxic Response of Vascular Endothelial Growth Factor and Intercellular Adhesive Molecule-1 in Monocytes from Diabetic Patients.

Yang ZK, Xu ZZ, Zhang X, Gao F, Yu WH.

Chin Med J (Engl). 2016 Dec 5;129(23):2882-2884. doi: 10.4103/0366-6999.194644. No abstract available.


Facilitating terminal discharge: fulfilling the hospitalised patient's wish for home death in the final hours.

Tan YY, Xu ZZ, Pang GS, Qu L, Xu Y, Zhang AM, Neo PS.

Int J Palliat Nurs. 2016 Nov 2;22(11):541-548.


Metadherin facilitates podocyte apoptosis in diabetic nephropathy.

Liu WT, Peng FF, Li HY, Chen XW, Gong WQ, Chen WJ, Chen YH, Li PL, Li ST, Xu ZZ, Long HB.

Cell Death Dis. 2016 Nov 24;7(11):e2477. doi: 10.1038/cddis.2016.335.


Corrigendum to "Irbesartan Ameliorates Diabetic Nephropathy by Suppressing the RANKL-RANK-NF-κB Pathway in Type 2 Diabetic db/db Mice".

Chen XW, Du XY, Wang YX, Wang JC, Liu WT, Chen WJ, Li HY, Peng FF, Xu ZZ, Niu HX, Long HB.

Mediators Inflamm. 2016;2016:3151986. Epub 2016 Oct 18.


Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies.

Song SJ, Amir A, Metcalf JL, Amato KR, Xu ZZ, Humphrey G, Knight R.

mSystems. 2016 May 3;1(3). pii: e00021-16. eCollection 2016 May-Jun.


Open-Source Sequence Clustering Methods Improve the State Of the Art.

Kopylova E, Navas-Molina JA, Mercier C, Xu ZZ, Mahé F, He Y, Zhou HW, Rognes T, Caporaso JG, Knight R.

mSystems. 2016 Feb 9;1(1). pii: e00003-15. eCollection 2016 Jan-Feb.


Effect of time of artificial insemination after oestrus detection on non-return rate of lactating dairy cows on pasture.

Xu ZZ.

N Z Vet J. 2017 May;65(3):119-123. doi: 10.1080/00480169.2016.1256238. Epub 2016 Nov 30.


Tiny microbes, enormous impacts: what matters in gut microbiome studies?

Debelius J, Song SJ, Vazquez-Baeza Y, Xu ZZ, Gonzalez A, Knight R.

Genome Biol. 2016 Oct 19;17(1):217. Review.


High-Brightness High-Energy Electron Beams from a Laser Wakefield Accelerator via Energy Chirp Control.

Wang WT, Li WT, Liu JS, Zhang ZJ, Qi R, Yu CH, Liu JQ, Fang M, Qin ZY, Wang C, Xu Y, Wu FX, Leng YX, Li RX, Xu ZZ.

Phys Rev Lett. 2016 Sep 16;117(12):124801. Epub 2016 Sep 16.


Interferon alpha inhibits spinal cord synaptic and nociceptive transmission via neuronal-glial interactions.

Liu CC, Gao YJ, Luo H, Berta T, Xu ZZ, Ji RR, Tan PH.

Sci Rep. 2016 Sep 27;6:34356. doi: 10.1038/srep34356.


Experiment-Assisted Secondary Structure Prediction with RNAstructure.

Xu ZZ, Mathews DH.

Methods Mol Biol. 2016;1490:163-76. doi: 10.1007/978-1-4939-6433-8_10.


Prediction of Secondary Structures Conserved in Multiple RNA Sequences.

Xu ZZ, Mathews DH.

Methods Mol Biol. 2016;1490:35-50. doi: 10.1007/978-1-4939-6433-8_3.


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