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Items: 1 to 50 of 279

1.

Tuning extreme learning machine by an improved electromagnetism-like mechanism algorithm for classification problem.

Zhang MY, Wu Q, Xu ZZ.

Math Biosci Eng. 2019 May 23;16(5):4692-4707. doi: 10.3934/mbe.2019235.

2.

Ultralow-Content Iron-Decorated Ni-MOF-74 Fabricated by a Metal-Organic Framework Surface Reaction for Efficient Electrocatalytic Water Oxidation.

Gao Z, Yu ZW, Liu FQ, Yu Y, Su XM, Wang L, Xu ZZ, Yang YL, Wu GR, Feng XF, Luo F.

Inorg Chem. 2019 Sep 3;58(17):11500-11507. doi: 10.1021/acs.inorgchem.9b01301. Epub 2019 Aug 15.

PMID:
31415153
3.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Sep;37(9):1091. doi: 10.1038/s41587-019-0252-6.

PMID:
31399723
4.

[A clinical analysis of 32 patients with carotid web].

Zhou F, Xu ZZ, Ji RJ, Ma L, Ke DQ, Liang H.

Zhonghua Nei Ke Za Zhi. 2019 Aug 1;58(8):599-601. doi: 10.3760/cma.j.issn.0578-1426.2019.08.010. Chinese.

PMID:
31365983
5.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. No abstract available. Erratum in: Nat Biotechnol. 2019 Sep;37(9):1091.

PMID:
31341288
6.

Effective sampling trajectory optimisation for sensitivity analysis of biological systems.

Xu ZZ, Liu J.

IET Syst Biol. 2019 Jun;13(3):109-119. doi: 10.1049/iet-syb.2018.5112.

PMID:
31170690
7.

Is Optogenetic Activation of Vglut1-Positive Aβ Low-Threshold Mechanoreceptors Sufficient to Induce Tactile Allodynia in Mice after Nerve Injury?

Chamessian A, Matsuda M, Young M, Wang M, Zhang ZJ, Liu D, Tobin B, Xu ZZ, Van de Ven T, Ji RR.

J Neurosci. 2019 Jul 31;39(31):6202-6215. doi: 10.1523/JNEUROSCI.2064-18.2019. Epub 2019 May 31.

PMID:
31152125
8.

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems.

Tripathi A, Xu ZZ, Xue J, Poulsen O, Gonzalez A, Humphrey G, Meehan MJ, Melnik AV, Ackermann G, Zhou D, Malhotra A, Haddad GG, Dorrestein PC, Knight R.

mSystems. 2019 Apr 30;4(2). pii: e00058-19. doi: 10.1128/mSystems.00058-19. eCollection 2019 Mar-Apr.

9.

Surgical method choice and coincidence rate of pathological diagnoses in transduodenal ampullectomy: A retrospective case series study and review of the literature.

Liu F, Cheng JL, Cui J, Xu ZZ, Fu Z, Liu J, Tian H.

World J Clin Cases. 2019 Mar 26;7(6):717-726. doi: 10.12998/wjcc.v7.i6.717.

10.

A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease.

Caussy C, Tripathi A, Humphrey G, Bassirian S, Singh S, Faulkner C, Bettencourt R, Rizo E, Richards L, Xu ZZ, Downes MR, Evans RM, Brenner DA, Sirlin CB, Knight R, Loomba R.

Nat Commun. 2019 Mar 29;10(1):1406. doi: 10.1038/s41467-019-09455-9.

11.

Comparative study on the Maillard reaction of chitosan oligosaccharide and glucose with soybean protein isolate.

Xu ZZ, Huang GQ, Xu TC, Liu LN, Xiao JX.

Int J Biol Macromol. 2019 Jun 15;131:601-607. doi: 10.1016/j.ijbiomac.2019.03.101. Epub 2019 Mar 18.

PMID:
30898596
12.

Mesorhizobium carbonis sp. nov., isolated from coal bed water.

Li J, Xin W, Xu ZZ, Xiang FQ, Zhang JJ, Xi LJ, Qu JB, Liu JG.

Antonie Van Leeuwenhoek. 2019 Aug;112(8):1221-1229. doi: 10.1007/s10482-019-01254-y. Epub 2019 Mar 14.

PMID:
30874924
13.

New Optical Manipulation of Relativistic Vortex Cutter.

Wang WP, Jiang C, Shen BF, Yuan F, Gan ZM, Zhang H, Zhai SH, Xu ZZ.

Phys Rev Lett. 2019 Jan 18;122(2):024801. doi: 10.1103/PhysRevLett.122.024801.

PMID:
30720300
14.

Calour: an Interactive, Microbe-Centric Analysis Tool.

Xu ZZ, Amir A, Sanders J, Zhu Q, Morton JT, Bletz MC, Tripathi A, Huang S, McDonald D, Jiang L, Knight R.

mSystems. 2019 Jan 29;4(1). pii: e00269-18. doi: 10.1128/mSystems.00269-18. eCollection 2019 Jan-Feb.

15.

[Correlation studies of distinct mutational signatures with common cancer pathological subtyping].

Shi Y, Xu ZZ, Lu H, Ci WM.

Yi Chuan. 2018 Nov 20;40(11):1033-1038. doi: 10.16288/j.yczz.18-208. Chinese.

PMID:
30465536
16.

Aromatic hydrocarbon receptor provides a link between smoking and rheumatoid arthritis in peripheral blood mononuclear cells.

Cheng L, Qian L, Xu ZZ, Tan Y, Luo CY.

Clin Exp Rheumatol. 2019 May-Jun;37(3):445-449. Epub 2018 Oct 22.

17.

Identification of new high affinity targets for Roquin based on structural conservation.

Braun J, Fischer S, Xu ZZ, Sun H, Ghoneim DH, Gimbel AT, Plessmann U, Urlaub H, Mathews DH, Weigand JE.

Nucleic Acids Res. 2018 Dec 14;46(22):12109-12125. doi: 10.1093/nar/gky908.

18.

Unicentric Castleman disease presenting as a retroperitoneal peripancreatic mass: A report of two cases and review of literature.

Cheng JL, Cui J, Wang Y, Xu ZZ, Liu F, Liang SB, Tian H.

World J Gastroenterol. 2018 Sep 14;24(34):3958-3964. doi: 10.3748/wjg.v24.i34.3958. Review.

19.

Long-term outcomes and quality of life following ligation of the intersphincteric fistula tract for high transsphincteric fistulas.

Sun XL, Wen K, Chen YH, Xu ZZ, Wang XP.

Colorectal Dis. 2019 Jan;21(1):30-37. doi: 10.1111/codi.14405. Epub 2018 Nov 21.

PMID:
30184334
20.

Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus).

Minich JJ, Zhu Q, Xu ZZ, Amir A, Ngochera M, Simwaka M, Allen EE, Zidana H, Knight R.

Microbiologyopen. 2018 Dec;7(6):e00716. doi: 10.1002/mbo3.716. Epub 2018 Aug 31.

21.

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.

Zarrinpar A, Chaix A, Xu ZZ, Chang MW, Marotz CA, Saghatelian A, Knight R, Panda S.

Nat Commun. 2018 Jul 20;9(1):2872. doi: 10.1038/s41467-018-05336-9.

22.

GPR37 regulates macrophage phagocytosis and resolution of inflammatory pain.

Bang S, Xie YK, Zhang ZJ, Wang Z, Xu ZZ, Ji RR.

J Clin Invest. 2018 Aug 1;128(8):3568-3582. doi: 10.1172/JCI99888. Epub 2018 Jul 16.

23.

RIPK4 promotes bladder urothelial carcinoma cell aggressiveness by upregulating VEGF-A through the NF-κB pathway.

Liu JY, Zeng QH, Cao PG, Xie D, Chen X, Yang F, He LY, Dai YB, Li JJ, Liu XM, Zeng HL, Zhu YX, Gong L, Cheng Y, Zhou JD, Hu J, Bo H, Xu ZZ, Cao K.

Br J Cancer. 2018 Jun;118(12):1617-1627. doi: 10.1038/s41416-018-0116-8. Epub 2018 Jun 5.

24.

Best practices for analysing microbiomes.

Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC.

Nat Rev Microbiol. 2018 Jul;16(7):410-422. doi: 10.1038/s41579-018-0029-9. Review.

PMID:
29795328
25.

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

Michaud JM, Thompson LR, Kaul D, Espinoza JL, Richter RA, Xu ZZ, Lee C, Pham KM, Beall CM, Malfatti F, Azam F, Knight R, Burkart MD, Dupont CL, Prather KA.

Nat Commun. 2018 May 22;9(1):2017. doi: 10.1038/s41467-018-04409-z.

26.

Magnetic resonance imaging findings for differential diagnosis of perianal plexiform schwannoma: Case report and review of the literature.

Sun XL, Wen K, Xu ZZ, Wang XP.

World J Clin Cases. 2018 May 16;6(5):88-93. doi: 10.12998/wjcc.v6.i5.88.

27.

Distinct Analgesic Actions of DHA and DHA-Derived Specialized Pro-Resolving Mediators on Post-operative Pain After Bone Fracture in Mice.

Zhang L, Terrando N, Xu ZZ, Bang S, Jordt SE, Maixner W, Serhan CN, Ji RR.

Front Pharmacol. 2018 May 1;9:412. doi: 10.3389/fphar.2018.00412. eCollection 2018.

28.

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

Janssen S, McDonald D, Gonzalez A, Navas-Molina JA, Jiang L, Xu ZZ, Winker K, Kado DM, Orwoll E, Manary M, Mirarab S, Knight R.

mSystems. 2018 Apr 17;3(3). pii: e00021-18. doi: 10.1128/mSystems.00021-18. eCollection 2018 May-Jun.

29.

Exposure to toxic metals triggers unique responses from the rat gut microbiota.

Richardson JB, Dancy BCR, Horton CL, Lee YS, Madejczyk MS, Xu ZZ, Ackermann G, Humphrey G, Palacios G, Knight R, Lewis JA.

Sci Rep. 2018 Apr 26;8(1):6578. doi: 10.1038/s41598-018-24931-w.

30.

[Response of radial growth of Pinus koraiensis and Picea jezoensis to climate change in Xiao-xing'anling Mountains, Northeast China].

Yu J, Liu QJ, Zhou G, Meng SW, Zhou H, Xu ZZ, Shi JN, Du WX.

Ying Yong Sheng Tai Xue Bao. 2017 Nov;28(11):3451-3460. doi: 10.13287/j.1001-9332.201711.008. Chinese.

PMID:
29692086
31.

SPAG5 promotes proliferation and suppresses apoptosis in bladder urothelial carcinoma by upregulating Wnt3 via activating the AKT/mTOR pathway and predicts poorer survival.

Liu JY, Zeng QH, Cao PG, Xie D, Yang F, He LY, Dai YB, Li JJ, Liu XM, Zeng HL, Fan XJ, Liu L, Zhu YX, Gong L, Cheng Y, Zhou JD, Hu J, Bo H, Xu ZZ, Cao K.

Oncogene. 2018 Jul;37(29):3937-3952. doi: 10.1038/s41388-018-0223-2. Epub 2018 Apr 17.

PMID:
29662193
32.

DNA Methylation and Uveal Melanoma.

Yang ZK, Yang JY, Xu ZZ, Yu WH.

Chin Med J (Engl). 2018 Apr 5;131(7):845-851. doi: 10.4103/0366-6999.228229. Review.

33.

Efficacy and safety of American ginseng (Panax quinquefolius L.) extract on glycemic control and cardiovascular risk factors in individuals with type 2 diabetes: a double-blind, randomized, cross-over clinical trial.

Vuksan V, Xu ZZ, Jovanovski E, Jenkins AL, Beljan-Zdravkovic U, Sievenpiper JL, Mark Stavro P, Zurbau A, Duvnjak L, Li MZC.

Eur J Nutr. 2019 Apr;58(3):1237-1245. doi: 10.1007/s00394-018-1642-0. Epub 2018 Feb 24.

PMID:
29478187
34.

Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models.

Belk A, Xu ZZ, Carter DO, Lynne A, Bucheli S, Knight R, Metcalf JL.

Genes (Basel). 2018 Feb 16;9(2). pii: E104. doi: 10.3390/genes9020104.

35.

Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction.

Zhou Y, Xu ZZ, He Y, Yang Y, Liu L, Lin Q, Nie Y, Li M, Zhi F, Liu S, Amir A, González A, Tripathi A, Chen M, Wu GD, Knight R, Zhou H, Chen Y.

mSystems. 2018 Jan 30;3(1). pii: e00188-17. doi: 10.1128/mSystems.00188-17. eCollection 2018 Jan-Feb.

36.

Effect of combined epidural anaesthesia on tumor-infiltrating lymphocytes in lung adenocarcinoma: a prospective exploratory sub-analysis.

Li MH, Xu ZZ, Huang SM, Li T, Li XY, Wang DX.

Acta Anaesthesiol Scand. 2018 May;62(5):687-700. doi: 10.1111/aas.13068. Epub 2018 Jan 23.

PMID:
29363103
37.

Application of liquid semen technology under the seasonal dairy production system in New Zealand.

Yang DH, Standley NT, Xu ZZ.

Anim Reprod Sci. 2018 Jul;194:2-10. doi: 10.1016/j.anireprosci.2018.01.004. Epub 2018 Jan 16. Review.

PMID:
29361377
38.

Helper-Dependent Chain Reaction (HDCR) for Selective Amplification of Methylated DNA Sequences.

Mitchell SM, Rand KN, Xu ZZ, Ho T, Brown GS, Ross JP, Molloy PL.

Methods Mol Biol. 2018;1708:587-601. doi: 10.1007/978-1-4939-7481-8_30.

PMID:
29224165
39.

Collisionless Shock Acceleration of High-Flux Quasimonoenergetic Proton Beams Driven by Circularly Polarized Laser Pulses.

Zhang H, Shen BF, Wang WP, Zhai SH, Li SS, Lu XM, Li JF, Xu RJ, Wang XL, Liang XY, Leng YX, Li RX, Xu ZZ.

Phys Rev Lett. 2017 Oct 20;119(16):164801. doi: 10.1103/PhysRevLett.119.164801. Epub 2017 Oct 17.

PMID:
29099228
40.

Guiding longitudinal sampling in IBD cohorts.

Vázquez-Baeza Y, Gonzalez A, Xu ZZ, Washburne A, Herfarth HH, Sartor RB, Knight R.

Gut. 2018 Sep;67(9):1743-1745. doi: 10.1136/gutjnl-2017-315352. Epub 2017 Oct 21. No abstract available.

41.

Pathway-based discovery of genetic interactions in breast cancer.

Wang W, Xu ZZ, Costanzo M, Boone C, Lange CA, Myers CL.

PLoS Genet. 2017 Sep 28;13(9):e1006973. doi: 10.1371/journal.pgen.1006973. eCollection 2017 Sep.

42.

Clinical significance of chemokine receptor CXCR4 and mammalian target of rapamycin (mTOR) expression in patients with diffuse large B-cell lymphoma.

Xu ZZ, Shen JK, Zhao SQ, Li JM.

Leuk Lymphoma. 2018 Jun;59(6):1451-1460. doi: 10.1080/10428194.2017.1379077. Epub 2017 Sep 27.

PMID:
28952842
43.

HSP70-Hrd1 axis precludes the oncorepressor potential of N-terminal misfolded Blimp-1s in lymphoma cells.

Wang WF, Yan L, Liu Z, Liu LX, Lin J, Liu ZY, Chen XP, Zhang W, Xu ZZ, Shi T, Li JM, Zhao YL, Meng G, Xia Y, Li JY, Zhu J.

Nat Commun. 2017 Aug 25;8(1):363. doi: 10.1038/s41467-017-00476-w.

44.

[Clinical Significance of Corrected Serum Calcium in 320 Patients with Multiple Myeloma].

Xu ZZ, Wu SQ, Wang QQ, Ye YM, Ma XM, Zhan R.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2017 Aug;25(4):1058-1062. doi: 10.7534/j.issn.1009-2137.2017.04.017. Chinese.

PMID:
28823268
45.

Microbiome Tools for Forensic Science.

Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R.

Trends Biotechnol. 2017 Sep;35(9):814-823. doi: 10.1016/j.tibtech.2017.03.006. Epub 2017 Mar 30. Review.

PMID:
28366290
46.

Solute carrier family 12 member 5 promotes tumor invasion/metastasis of bladder urothelial carcinoma by enhancing NF-κB/MMP-7 signaling pathway.

Liu JY, Dai YB, Li X, Cao K, Xie D, Tong ZT, Long Z, Xiao H, Chen MK, Ye YL, Liu B, Tan J, Tang J, Xu ZZ, Gan Y, Zhou YH, Deng F, He LY.

Cell Death Dis. 2017 Mar 23;8(3):e2691. doi: 10.1038/cddis.2017.118.

47.

Normalization and microbial differential abundance strategies depend upon data characteristics.

Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R.

Microbiome. 2017 Mar 3;5(1):27. doi: 10.1186/s40168-017-0237-y.

48.

Rapid Detection of Atrazine at Workplace with Near-Infrared Spectroscopy.

Zhou XF, Song XZ, Fu ZH, Zhao P, Xu ZZ, Tang SC.

Guang Pu Xue Yu Guang Pu Fen Xi. 2017 Mar;37(3):755-9. Chinese, English.

PMID:
30148562
49.

Sesquiterpenoids from the twigs and leaves of Fokienia hodginsii.

Wu XD, Zhong WW, Ding LF, Tu WC, Yang H, Gong X, Peng LY, Li Y, Xu ZZ, Zhao QS.

J Asian Nat Prod Res. 2017 Jul;19(7):666-672. doi: 10.1080/10286020.2016.1247350. Epub 2016 Dec 17.

PMID:
27989219
50.

Evaluation of Methylation Biomarkers for Detection of Circulating Tumor DNA and Application to Colorectal Cancer.

Mitchell SM, Ho T, Brown GS, Baker RT, Thomas ML, McEvoy A, Xu ZZ, Ross JP, Lockett TJ, Young GP, LaPointe LC, Pedersen SK, Molloy PL.

Genes (Basel). 2016 Dec 15;7(12). pii: E125.

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