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Items: 1 to 50 of 73


Automatic Human-like Mining and Constructing Reliable Genetic Association Database with Deep Reinforcement Learning.

Wang H, Liu X, Tao Y, Ye W, Jin Q, Cohen WW, Xing EP.

Pac Symp Biocomput. 2019;24:112-123.


ConnNet: A Long-Range Relation-Aware Pixel-Connectivity Network for Salient Segmentation.

Kampffmeyer M, Dong N, Liang X, Zhang Y, Xing EP.

IEEE Trans Image Process. 2018 Dec 14. doi: 10.1109/TIP.2018.2886997. [Epub ahead of print]


Precision Lasso: accounting for correlations and linear dependencies in high-dimensional genomic data.

Wang H, Lengerich BJ, Aragam B, Xing EP.

Bioinformatics. 2019 Apr 1;35(7):1181-1187. doi: 10.1093/bioinformatics/bty750.


Ensembles of Lasso Screening Rules.

Lee S, Gornitz N, Xing EP, Heckerman D, Lippert C.

IEEE Trans Pattern Anal Mach Intell. 2018 Dec;40(12):2841-2852. doi: 10.1109/TPAMI.2017.2765321. Epub 2017 Nov 24.


Personalized regression enables sample-specific pan-cancer analysis.

Lengerich BJ, Aragam B, Xing EP.

Bioinformatics. 2018 Jul 1;34(13):i178-i186. doi: 10.1093/bioinformatics/bty250.


Variable selection in heterogeneous datasets: A truncated-rank sparse linear mixed model with applications to genome-wide association studies.

Wang H, Aragam B, Xing EP.

Methods. 2018 Aug 1;145:2-9. doi: 10.1016/j.ymeth.2018.04.021. Epub 2018 Apr 27.


Multiplex confounding factor correction for genomic association mapping with squared sparse linear mixed model.

Wang H, Liu X, Xiao Y, Xu M, Xing EP.

Methods. 2018 Aug 1;145:33-40. doi: 10.1016/j.ymeth.2018.04.020. Epub 2018 Apr 27.


Variable Selection in Heterogeneous Datasets: A Truncated-rank Sparse Linear Mixed Model with Applications to Genome-wide Association Studies.

Wang H, Aragam B, Xing EP.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2017 Nov;2017:431-438. doi: 10.1109/BIBM.2017.8217687. Epub 2017 Dec 18.


Backward genotype-transcript-phenotype association mapping.

Lee S, Wang H, Xing EP.

Methods. 2017 Oct 1;129:18-23. doi: 10.1016/j.ymeth.2017.09.004. Epub 2017 Sep 14.


Deep learning-based subdivision approach for large scale macromolecules structure recovery from electron cryo tomograms.

Xu M, Chai X, Muthakana H, Liang X, Yang G, Zeev-Ben-Mordehai T, Xing EP.

Bioinformatics. 2017 Jul 15;33(14):i13-i22. doi: 10.1093/bioinformatics/btx230.


Variance Reduction in Stochastic Gradient Langevin Dynamics.

Dubey A, Reddi SJ, Póczos B, Smola AJ, Xing EP, Williamson SA.

Adv Neural Inf Process Syst. 2016 Dec;29:1154-1162.


Inference of multiple-wave population admixture by modeling decay of linkage disequilibrium with polynomial functions.

Zhou Y, Yuan K, Yu Y, Ni X, Xie P, Xing EP, Xu S.

Heredity (Edinb). 2017 May;118(5):503-510. doi: 10.1038/hdy.2017.5. Epub 2017 Feb 15.


Semantic Pooling for Complex Event Analysis in Untrimmed Videos.

Xiaojun Chang, Yao-Liang Yu, Yi Yang, Xing EP.

IEEE Trans Pattern Anal Mach Intell. 2017 Aug;39(8):1617-1632. doi: 10.1109/TPAMI.2016.2608901. Epub 2016 Sep 13.


Learning Scalable Deep Kernels with Recurrent Structure.

Al-Shedivat M, Wilson AG, Saatchi Y, Hu Z, Xing EP.

J Mach Learn Res. 2017 Jan;18(1):2850-2886.


A network-driven approach for genome-wide association mapping.

Lee S, Kong S, Xing EP.

Bioinformatics. 2016 Jun 15;32(12):i164-i173. doi: 10.1093/bioinformatics/btw270.


A time-varying group sparse additive model for genome-wide association studies of dynamic complex traits.

Marchetti-Bowick M, Yin J, Howrylak JA, Xing EP.

Bioinformatics. 2016 Oct 1;32(19):2903-10. doi: 10.1093/bioinformatics/btw347. Epub 2016 Jun 13.


An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations.

Lee S, Lozano A, Kambadur P, Xing EP.

J Comput Biol. 2016 May;23(5):372-89. doi: 10.1089/cmb.2015.0202.


Gene expression profiling of asthma phenotypes demonstrates molecular signatures of atopy and asthma control.

Howrylak JA, Moll M, Weiss ST, Raby BA, Wu W, Xing EP.

J Allergy Clin Immunol. 2016 May;137(5):1390-1397.e6. doi: 10.1016/j.jaci.2015.09.058. Epub 2016 Jan 12.


Graph Estimation From Multi-Attribute Data.

Kolar M, Liu H, Xing EP.

J Mach Learn Res. 2014 May;15(May):1713-1750.


Diffusion of lexical change in social media.

Eisenstein J, O'Connor B, Smith NA, Xing EP.

PLoS One. 2014 Nov 19;9(11):e113114. doi: 10.1371/journal.pone.0113114. eCollection 2014.


Network analysis of breast cancer progression and reversal using a tree-evolving network algorithm.

Parikh AP, Curtis RE, Kuhn I, Becker-Weimann S, Bissell M, Xing EP, Wu W.

PLoS Comput Biol. 2014 Jul 24;10(7):e1003713. doi: 10.1371/journal.pcbi.1003713. eCollection 2014 Jul.


Kernel methods for large-scale genomic data analysis.

Wang X, Xing EP, Schaid DJ.

Brief Bioinform. 2015 Mar;16(2):183-92. doi: 10.1093/bib/bbu024. Epub 2014 Jul 22. Review.


GWAS in a box: statistical and visual analytics of structured associations via GenAMap.

Xing EP, Curtis RE, Schoenherr G, Lee S, Yin J, Puniyani K, Wu W, Kinnaird P.

PLoS One. 2014 Jun 6;9(6):e97524. doi: 10.1371/journal.pone.0097524. eCollection 2014.


Effects of sample selection bias on the accuracy of population structure and ancestry inference.

Shringarpure S, Xing EP.

G3 (Bethesda). 2014 Mar 17;4(5):901-11. doi: 10.1534/g3.113.007633.


NP-MuScL: unsupervised global prediction of interaction networks from multiple data sources.

Puniyani K, Xing EP.

J Comput Biol. 2013 Nov;20(11):892-904. doi: 10.1089/cmb.2013.0093. Epub 2013 Oct 17.


GINI: from ISH images to gene interaction networks.

Puniyani K, Xing EP.

PLoS Comput Biol. 2013;9(10):e1003227. doi: 10.1371/journal.pcbi.1003227. Epub 2013 Oct 10.


High-dimensional feature selection by feature-wise kernelized Lasso.

Yamada M, Jitkrittum W, Sigal L, Xing EP, Sugiyama M.

Neural Comput. 2014 Jan;26(1):185-207. doi: 10.1162/NECO_a_00537. Epub 2013 Oct 8.


More Effective Distributed ML via a Stale Synchronous Parallel Parameter Server.

Ho Q, Cipar J, Cui H, Kim JK, Lee S, Gibbons PB, Gibson GA, Ganger GR, Xing EP.

Adv Neural Inf Process Syst. 2013;2013:1223-1231.


A Scalable Approach to Probabilistic Latent Space Inference of Large-Scale Networks.

Yin J, Ho Q, Xing EP.

Adv Neural Inf Process Syst. 2013;2013:422-430.


Enabling dynamic network analysis through visualization in TVNViewer.

Curtis RE, Xiang J, Parikh A, Kinnaird P, Xing EP.

BMC Bioinformatics. 2012 Aug 16;13:204.


Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs.

Lee S, Xing EP.

Bioinformatics. 2012 Jun 15;28(12):i137-46. doi: 10.1093/bioinformatics/bts227.


Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach.

Sohn KA, Ghahramani Z, Xing EP.

Genetics. 2012 Aug;191(4):1295-308. doi: 10.1534/genetics.112.140228. Epub 2012 May 29.


Large-margin predictive latent subspace learning for multiview data analysis.

Chen N, Zhu J, Sun F, Xing EP.

IEEE Trans Pattern Anal Mach Intell. 2012 Dec;34(12):2365-78.


Group Sparse Additive Models.

Yin J, Chen X, Xing EP.

Proc Int Conf Mach Learn. 2012;2012:871-878.


Estimating networks with jumps.

Kolar M, Xing EP.

Electron J Stat. 2012;6:2069-2106.


Multiscale Community Blockmodel for Network Exploration.

Ho Q, Parikh AP, Xing EP.

J Am Stat Assoc. 2012;107(499). doi: 10.1080/01621459.2012.682530.


StructHDP: automatic inference of number of clusters and population structure from admixed genotype data.

Shringarpure S, Won D, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):i324-32. doi: 10.1093/bioinformatics/btr242.


TREEGL: reverse engineering tree-evolving gene networks underlying developing biological lineages.

Parikh AP, Wu W, Curtis RE, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):i196-204. doi: 10.1093/bioinformatics/btr239.


TVNViewer: an interactive visualization tool for exploring networks that change over time or space.

Curtis RE, Yuen A, Song L, Goyal A, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):1880-1. doi: 10.1093/bioinformatics/btr273. Epub 2011 May 5.


Exploiting genome structure in association analysis.

Kim S, Xing EP.

J Comput Biol. 2014 Apr;21(4):345-60. doi: 10.1089/cmb.2009.0224. Epub 2011 May 6.


SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images.

Puniyani K, Faloutsos C, Xing EP.

Bioinformatics. 2010 Jun 15;26(12):i47-56. doi: 10.1093/bioinformatics/btq172.


Multi-population GWA mapping via multi-task regularized regression.

Puniyani K, Kim S, Xing EP.

Bioinformatics. 2010 Jun 15;26(12):i208-16. doi: 10.1093/bioinformatics/btq191.


Statistical estimation of correlated genome associations to a quantitative trait network.

Kim S, Xing EP.

PLoS Genet. 2009 Aug;5(8):e1000587. doi: 10.1371/journal.pgen.1000587. Epub 2009 Aug 14.


Recovering time-varying networks of dependencies in social and biological studies.

Ahmed A, Xing EP.

Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):11878-83. doi: 10.1073/pnas.0901910106. Epub 2009 Jul 1.


DISCOVER: a feature-based discriminative method for motif search in complex genomes.

Fu W, Ray P, Xing EP.

Bioinformatics. 2009 Jun 15;25(12):i321-9. doi: 10.1093/bioinformatics/btp230.

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