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Items: 26

1.

Optimization of an in vitro gut microbiome biotransformation platform with chlorogenic acid as model compound: From fecal sample to biotransformation product identification.

Mortelé O, Iturrospe E, Breynaert A, Verdickt E, Xavier BB, Lammens C, Malhotra-Kumar S, Jorens PG, Pieters L, van Nuijs ALN, Hermans N.

J Pharm Biomed Anal. 2019 Oct 25;175:112768. doi: 10.1016/j.jpba.2019.07.016. Epub 2019 Jul 10.

PMID:
31398630
2.

The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata.

Armaleo D, Müller O, Lutzoni F, Andrésson ÓS, Blanc G, Bode HB, Collart FR, Dal Grande F, Dietrich F, Grigoriev IV, Joneson S, Kuo A, Larsen PE, Logsdon JM Jr, Lopez D, Martin F, May SP, McDonald TR, Merchant SS, Miao V, Morin E, Oono R, Pellegrini M, Rubinstein N, Sanchez-Puerta MV, Savelkoul E, Schmitt I, Slot JC, Soanes D, Szövényi P, Talbot NJ, Veneault-Fourrey C, Xavier BB.

BMC Genomics. 2019 Jul 23;20(1):605. doi: 10.1186/s12864-019-5629-x.

3.

Remarkable Genome Stability among emm1 Group A Streptococcus in Belgium over 19 Years.

Coppens J, Xavier BB, Loens K, Lammens C, Ieven M, Matheeussen V, Goossens H, Malhotra-Kumar S.

Genome Biol Evol. 2019 May 1;11(5):1432-1439. doi: 10.1093/gbe/evz093.

4.

Emergence of colistin resistance during treatment of recurrent pneumonia caused by carbapenemase producing Klebsiella pneumoniae.

Matheeussen V, Xavier BB, Mermans I, De Weerdt A, Lammens C, Goossens H, Jansens H, Malhotra-Kumar S.

Diagn Microbiol Infect Dis. 2019 Aug;94(4):407-409. doi: 10.1016/j.diagmicrobio.2019.02.014. Epub 2019 Feb 21.

PMID:
30890297
5.

Potential in vivo transfer of a blaCTX-M14-harbouring plasmid established by combining long- and short-read sequencing.

Xavier BB, Renzi G, Lammens C, Cherkaoui A, Goossens H, Schrenzel J, Harbarth S, Malhotra-Kumar S.

J Microbiol Methods. 2019 Apr;159:1-4. doi: 10.1016/j.mimet.2019.02.004. Epub 2019 Feb 7.

PMID:
30738818
6.

Novel composite SCCmec type III element in ST239 MRSA isolated from an Indian hospital.

Coppens J, Xavier BB, Vanjari L, De Backer S, Lammens C, Vemu L, Goossens H, Malhotra-Kumar S.

J Antimicrob Chemother. 2019 Jan 1;74(1):264-266. doi: 10.1093/jac/dky399. No abstract available.

PMID:
30285123
7.

Remarkable geographical variations between India and Europe in carriage of the staphylococcal surface protein-encoding sasX/sesI and in the population structure of methicillin-resistant Staphylococcus aureus belonging to clonal complex 8.

De Backer S, Xavier BB, Vanjari L, Coppens J, Lammens C, Vemu L, Carevic B, Hryniewicz W, Jorens P, Kumar-Singh S, Lee A, Harbarth S, Schrenzel J, Tacconelli E, Goossens H, Malhotra-Kumar S.

Clin Microbiol Infect. 2019 May;25(5):628.e1-628.e7. doi: 10.1016/j.cmi.2018.07.024. Epub 2018 Aug 2.

PMID:
30076977
8.

Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.

Partridge SR, Di Pilato V, Doi Y, Feldgarden M, Haft DH, Klimke W, Kumar-Singh S, Liu JH, Malhotra-Kumar S, Prasad A, Rossolini GM, Schwarz S, Shen J, Walsh T, Wang Y, Xavier BB.

J Antimicrob Chemother. 2018 Oct 1;73(10):2625-2630. doi: 10.1093/jac/dky262.

PMID:
30053115
9.

Evaluation of colistin stability in agar and comparison of four methods for MIC testing of colistin.

Turlej-Rogacka A, Xavier BB, Janssens L, Lammens C, Zarkotou O, Pournaras S, Goossens H, Malhotra-Kumar S.

Eur J Clin Microbiol Infect Dis. 2018 Feb;37(2):345-353. doi: 10.1007/s10096-017-3140-3. Epub 2017 Nov 25.

10.

The endotracheal tube microbiome associated with Pseudomonas aeruginosa or Staphylococcus epidermidis.

Hotterbeekx A, Xavier BB, Bielen K, Lammens C, Moons P, Schepens T, Ieven M, Jorens PG, Goossens H, Kumar-Singh S, Malhotra-Kumar S.

Sci Rep. 2016 Nov 4;6:36507. doi: 10.1038/srep36507.

11.

Identification of a novel plasmid-mediated colistin-resistance gene, mcr-2, in Escherichia coli, Belgium, June 2016.

Xavier BB, Lammens C, Ruhal R, Kumar-Singh S, Butaye P, Goossens H, Malhotra-Kumar S.

Euro Surveill. 2016 Jul 7;21(27). doi: 10.2807/1560-7917.ES.2016.21.27.30280. Erratum in: Euro Surveill. 2016 Jul 14;21(28):.

12.

Complete sequence of an IncFII plasmid harbouring the colistin resistance gene mcr-1 isolated from Belgian pig farms.

Xavier BB, Lammens C, Butaye P, Goossens H, Malhotra-Kumar S.

J Antimicrob Chemother. 2016 Aug;71(8):2342-4. doi: 10.1093/jac/dkw191. Epub 2016 Jun 3. No abstract available.

PMID:
27261261
13.

Whole-genome typing and characterization of blaVIM19-harbouring ST383 Klebsiella pneumoniae by PFGE, whole-genome mapping and WGS.

Sabirova JS, Xavier BB, Coppens J, Zarkotou O, Lammens C, Janssens L, Burggrave R, Wagner T, Goossens H, Malhotra-Kumar S.

J Antimicrob Chemother. 2016 Jun;71(6):1501-9. doi: 10.1093/jac/dkw003. Epub 2016 Mar 10.

PMID:
26968884
14.

Consolidating and Exploring Antibiotic Resistance Gene Data Resources.

Xavier BB, Das AJ, Cochrane G, De Ganck S, Kumar-Singh S, Aarestrup FM, Goossens H, Malhotra-Kumar S.

J Clin Microbiol. 2016 Apr;54(4):851-9. doi: 10.1128/JCM.02717-15. Epub 2016 Jan 27. Review.

15.

Detection and characterization of two NDM-1-producing Klebsiella pneumoniae strains from Bulgaria.

Kostyanev T, Strateva T, Xavier BB, Marteva-Proevska Y, Lammens C, Markova B, Goossens H, Malhotra-Kumar S.

J Antimicrob Chemother. 2016 May;71(5):1428-30. doi: 10.1093/jac/dkv471. Epub 2016 Jan 26. No abstract available.

PMID:
26817486
16.

Colistin-resistant Escherichia coli harbouring mcr-1 isolated from food animals in Hanoi, Vietnam.

Malhotra-Kumar S, Xavier BB, Das AJ, Lammens C, Hoang HT, Pham NT, Goossens H.

Lancet Infect Dis. 2016 Mar;16(3):286-7. doi: 10.1016/S1473-3099(16)00014-1. Epub 2016 Jan 8. No abstract available.

PMID:
26774248
17.

Colistin resistance gene mcr-1 harboured on a multidrug resistant plasmid.

Malhotra-Kumar S, Xavier BB, Das AJ, Lammens C, Butaye P, Goossens H.

Lancet Infect Dis. 2016 Mar;16(3):283-4. doi: 10.1016/S1473-3099(16)00012-8. Epub 2016 Jan 8. No abstract available. Erratum in: Lancet Infect Dis. 2016 Mar;16(3):279.

PMID:
26774247
18.

Colistin-Resistant Acinetobacter baumannii Clinical Strains with Deficient Biofilm Formation.

Dafopoulou K, Xavier BB, Hotterbeekx A, Janssens L, Lammens C, Dé E, Goossens H, Tsakris A, Malhotra-Kumar S, Pournaras S.

Antimicrob Agents Chemother. 2015 Dec 14;60(3):1892-5. doi: 10.1128/AAC.02518-15.

19.

Fatty acid kinase A is an important determinant of biofilm formation in Staphylococcus aureus USA300.

Sabirova JS, Hernalsteens JP, De Backer S, Xavier BB, Moons P, Turlej-Rogacka A, De Greve H, Goossens H, Malhotra-Kumar S.

BMC Genomics. 2015 Oct 26;16:861. doi: 10.1186/s12864-015-1956-8.

20.

Metagenomic analysis of the impact of nitrofurantoin treatment on the human faecal microbiota.

Vervoort J, Xavier BB, Stewardson A, Coenen S, Godycki-Cwirko M, Adriaenssens N, Kowalczyk A, Lammens C, Harbarth S, Goossens H, Malhotra-Kumar S.

J Antimicrob Chemother. 2015 Jul;70(7):1989-92. doi: 10.1093/jac/dkv062. Epub 2015 Mar 12.

PMID:
25766736
21.

Whole genome mapping as a fast-track tool to assess genomic stability of sequenced Staphylococcus aureus strains.

Sabirova JS, Xavier BB, Ieven M, Goossens H, Malhotra-Kumar S.

BMC Res Notes. 2014 Oct 8;7:704. doi: 10.1186/1756-0500-7-704.

22.

An in vitro deletion in ribE encoding lumazine synthase contributes to nitrofurantoin resistance in Escherichia coli.

Vervoort J, Xavier BB, Stewardson A, Coenen S, Godycki-Cwirko M, Adriaenssens N, Kowalczyk A, Lammens C, Harbarth S, Goossens H, Malhotra-Kumar S.

Antimicrob Agents Chemother. 2014 Dec;58(12):7225-33. doi: 10.1128/AAC.03952-14. Epub 2014 Sep 22.

23.

Employing whole genome mapping for optimal de novo assembly of bacterial genomes.

Xavier BB, Sabirova J, Pieter M, Hernalsteens JP, de Greve H, Goossens H, Malhotra-Kumar S.

BMC Res Notes. 2014 Jul 30;7:484. doi: 10.1186/1756-0500-7-484.

24.

Complete Genome Sequences of Two Prolific Biofilm-Forming Staphylococcus aureus Isolates Belonging to USA300 and EMRSA-15 Clonal Lineages.

Sabirova JS, Xavier BB, Hernalsteens JP, De Greve H, Ieven M, Goossens H, Malhotra-Kumar S.

Genome Announc. 2014 Jun 26;2(3). pii: e00610-14. doi: 10.1128/genomeA.00610-14.

25.

Complete Genome Sequences of Nitrofurantoin-Sensitive and -Resistant Escherichia coli ST540 and ST2747 Strains.

Xavier BB, Vervoort J, Stewardson A, Adriaenssens N, Coenen S, Harbarth S, Goossens H, Malhotra-Kumar S.

Genome Announc. 2014 Apr 10;2(2). pii: e00239-14. doi: 10.1128/genomeA.00239-14.

26.

Mitochondrial genomes from the lichenized fungi Peltigera membranacea and Peltigera malacea: features and phylogeny.

Xavier BB, Miao VP, Jónsson ZO, Andrésson ÓS.

Fungal Biol. 2012 Jul;116(7):802-14. doi: 10.1016/j.funbio.2012.04.013. Epub 2012 May 5.

PMID:
22749167

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