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Items: 1 to 50 of 102

1.

Simple CRISPR-Cas9 Genome Editing in Saccharomyces cerevisiae.

Laughery MF, Wyrick JJ.

Curr Protoc Mol Biol. 2019 Dec;129(1):e110. doi: 10.1002/cpmb.110.

PMID:
31763795
2.

Low-Resistance, High-Yield Electrical Contacts to Atom Scale Si:P Devices Using Palladium Silicide.

Schmucker SW, Namboodiri PN, Kashid R, Wang X, Hu B, Wyrick JE, Myers AF, Schumacher JD, Silver RM, Stewart MD Jr.

Phys Rev Appl. 2019;11. doi: 10.1103/PhysRevApplied.11.034071.

3.

Outcomes in Critically Ill Patients With Traumatic Brain Injury: Ethnicity, Documentation, and Insurance Status.

Ram P, Miah FT, Wyrick JM, Kalosza BA, Coritsidis GN.

Crit Care Med. 2019 Sep 25. doi: 10.1097/CCM.0000000000004043. [Epub ahead of print]

PMID:
31567403
4.

Nucleosomes Regulate Base Excision Repair in Chromatin.

Meas R, Wyrick JJ, Smerdon MJ.

Mutat Res. 2019 Apr-Jun;780:29-36. doi: 10.1016/j.mrrev.2017.10.002. Epub 2017 Nov 7.

PMID:
31388331
5.

Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective.

Mao P, Wyrick JJ.

DNA Repair (Amst). 2019 Sep;81:102645. doi: 10.1016/j.dnarep.2019.102645. Epub 2019 Jul 8. Review.

PMID:
31307926
6.

Factors Predictive of Blocking Screw Placement in Retrograde Nailing of Distal Femur Fractures.

Schumaier AP, Southam BR, Avilucea FR, Finnan RP, Wyrick JD, Archdeacon MT, Le TT.

J Orthop Trauma. 2019 Jun;33(6):e229-e233. doi: 10.1097/BOT.0000000000001450.

PMID:
31124911
7.

Using Yeast as a Model Organism to Study the Functional Roles of Histone Acetylation in DNA Excision Repair.

Hodges AJ, Roberts SA, Wyrick JJ.

Methods Mol Biol. 2019;1983:175-190. doi: 10.1007/978-1-4939-9434-2_10.

PMID:
31087298
8.

Recurrent Noncoding Mutations in Skin Cancers: UV Damage Susceptibility or Repair Inhibition as Primary Driver?

Roberts SA, Brown AJ, Wyrick JJ.

Bioessays. 2019 Mar;41(3):e1800152. doi: 10.1002/bies.201800152. Epub 2019 Feb 25.

PMID:
30801747
9.

R-loop formation by dCas9 is mutagenic in Saccharomyces cerevisiae.

Laughery MF, Mayes HC, Pedroza IK, Wyrick JJ.

Nucleic Acids Res. 2019 Mar 18;47(5):2389-2401. doi: 10.1093/nar/gky1278.

10.

Nucleosome positions establish an extended mutation signature in melanoma.

Brown AJ, Mao P, Smerdon MJ, Wyrick JJ, Roberts SA.

PLoS Genet. 2018 Nov 28;14(11):e1007823. doi: 10.1371/journal.pgen.1007823. eCollection 2018 Nov.

11.

NuA4 acetyltransferase is required for efficient nucleotide excision repair in yeast.

Hodges AJ, Plummer DA, Wyrick JJ.

DNA Repair (Amst). 2019 Jan;73:91-98. doi: 10.1016/j.dnarep.2018.11.006. Epub 2018 Nov 14.

PMID:
30473425
12.

Atom-by-Atom Construction of a Cyclic Artificial Molecule in Silicon.

Wyrick J, Wang X, Namboodiri P, Schmucker SW, Kashid RV, Silver RM.

Nano Lett. 2018 Dec 12;18(12):7502-7508. doi: 10.1021/acs.nanolett.8b02919. Epub 2018 Nov 20.

PMID:
30428677
13.

Terminal position of a tibial intramedullary nail: a computed tomography (CT) based study.

Schumaier AP, Avilucea FR, Southam BR, Sinha P, Le TT, Wyrick JD, Archdeacon MT.

Eur J Trauma Emerg Surg. 2018 Aug 22. doi: 10.1007/s00068-018-1000-1. [Epub ahead of print]

PMID:
30167737
14.

ETS transcription factors induce a unique UV damage signature that drives recurrent mutagenesis in melanoma.

Mao P, Brown AJ, Esaki S, Lockwood S, Poon GMK, Smerdon MJ, Roberts SA, Wyrick JJ.

Nat Commun. 2018 Jul 6;9(1):2626. doi: 10.1038/s41467-018-05064-0.

15.

A cassette of basic amino acids in histone H2B regulates nucleosome dynamics and access to DNA damage.

Rodriguez Y, Duan M, Wyrick JJ, Smerdon MJ.

J Biol Chem. 2018 May 11;293(19):7376-7386. doi: 10.1074/jbc.RA117.000358. Epub 2018 Mar 27.

16.

The Effectiveness of Mini-C-Arm Fluoroscopy for the Closed Reduction of Distal Radius Fractures in Adults: A Randomized Controlled Trial.

Dailey SK, Miller AR, Kakazu R, Wyrick JD, Stern PJ.

J Hand Surg Am. 2018 Oct;43(10):927-931. doi: 10.1016/j.jhsa.2018.02.015. Epub 2018 Mar 21.

PMID:
29573894
17.

Quantifying atom-scale dopant movement and electrical activation in Si:P monolayers.

Wang X, Hagmann JA, Namboodiri P, Wyrick J, Li K, Murray RE, Myers A, Misenkosen F, Stewart MD, Richter CA, Silver RM.

Nanoscale. 2018 Mar 1;10(9):4488-4499. doi: 10.1039/c7nr07777g.

PMID:
29459919
18.

RegulatorDB: a resource for the analysis of yeast transcriptional regulation.

Choi JA, Wyrick JJ.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax058.

19.

Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity.

Mao P, Brown AJ, Malc EP, Mieczkowski PA, Smerdon MJ, Roberts SA, Wyrick JJ.

Genome Res. 2017 Oct;27(10):1674-1684. doi: 10.1101/gr.225771.117. Epub 2017 Sep 14.

20.

Trauma care in a multiethnic population: effects of being undocumented.

Wyrick JM, Kalosza BA, Coritsidis GN, Tse R, Agriantonis G.

J Surg Res. 2017 Jun 15;214:145-153. doi: 10.1016/j.jss.2017.02.006. Epub 2017 Feb 21.

PMID:
28624037
21.

An on/off Berry phase switch in circular graphene resonators.

Ghahari F, Walkup D, Gutiérrez C, Rodriguez-Nieva JF, Zhao Y, Wyrick J, Natterer FD, Cullen WG, Watanabe K, Taniguchi T, Levitov LS, Zhitenev NB, Stroscio JA.

Science. 2017 May 26;356(6340):845-849. doi: 10.1126/science.aal0212.

22.

Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae.

Hodges AJ, Gloss LM, Wyrick JJ.

Genetics. 2017 Jul;206(3):1339-1348. doi: 10.1534/genetics.117.201939. Epub 2017 May 3.

23.

Tomography of a Probe Potential Using Atomic Sensors on Graphene.

Wyrick J, Natterer FD, Zhao Y, Watanabe K, Taniguchi T, Cullen WG, Zhitenev NB, Stroscio JA.

ACS Nano. 2016 Dec 27;10(12):10698-10705. doi: 10.1021/acsnano.6b05823. Epub 2016 Nov 10.

24.

A basic domain in the histone H2B N-terminal tail is important for nucleosome assembly by FACT.

Mao P, Kyriss MN, Hodges AJ, Duan M, Morris RT, Lavine MD, Topping TB, Gloss LM, Wyrick JJ.

Nucleic Acids Res. 2016 Nov 2;44(19):9142-9152. Epub 2016 Jul 1.

25.

Emerging roles for histone modifications in DNA excision repair.

Mao P, Wyrick JJ.

FEMS Yeast Res. 2016 Nov;16(7). pii: fow090. Epub 2016 Oct 12. Review.

26.

Single-Molecule Imaging Reveals that Rad4 Employs a Dynamic DNA Damage Recognition Process.

Kong M, Liu L, Chen X, Driscoll KI, Mao P, Böhm S, Kad NM, Watkins SC, Bernstein KA, Wyrick JJ, Min JH, Van Houten B.

Mol Cell. 2016 Oct 20;64(2):376-387. doi: 10.1016/j.molcel.2016.09.005. Epub 2016 Oct 6.

27.

Nucleosomes Selectively Inhibit Cas9 Off-target Activity at a Site Located at the Nucleosome Edge.

Hinz JM, Laughery MF, Wyrick JJ.

J Biol Chem. 2016 Nov 25;291(48):24851-24856. Epub 2016 Oct 18.

28.

UV-Induced DNA Damage and Mutagenesis in Chromatin.

Mao P, Wyrick JJ, Roberts SA, Smerdon MJ.

Photochem Photobiol. 2017 Jan;93(1):216-228. doi: 10.1111/php.12646. Epub 2016 Nov 7. Review.

29.

Gtpbp2 is a positive regulator of Wnt signaling and maintains low levels of the Wnt negative regulator Axin.

Gillis WQ, Kirmizitas A, Iwasaki Y, Ki DH, Wyrick JM, Thomsen GH.

Cell Commun Signal. 2016 Aug 2;14(1):15. doi: 10.1186/s12964-016-0138-x.

30.

Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution.

Mao P, Smerdon MJ, Roberts SA, Wyrick JJ.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9057-62. doi: 10.1073/pnas.1606667113. Epub 2016 Jul 25.

31.

Iatrogenic Radial Nerve Palsy After Humeral Shaft Nonunion Repair: More Common Than You Think.

Kakazu R, Dailey SK, Schroeder AJ, Wyrick JD, Archdeacon MT.

J Orthop Trauma. 2016 May;30(5):256-61. doi: 10.1097/BOT.0000000000000525.

PMID:
27101163
32.

Site-specific Acetylation of Histone H3 Decreases Polymerase β Activity on Nucleosome Core Particles in Vitro.

Rodriguez Y, Hinz JM, Laughery MF, Wyrick JJ, Smerdon MJ.

J Biol Chem. 2016 May 20;291(21):11434-45. doi: 10.1074/jbc.M116.725788. Epub 2016 Mar 31.

33.

Nucleosomes Inhibit Cas9 Endonuclease Activity in Vitro.

Hinz JM, Laughery MF, Wyrick JJ.

Biochemistry. 2015 Dec 8;54(48):7063-6. doi: 10.1021/acs.biochem.5b01108. Epub 2015 Nov 24.

PMID:
26579937
34.

Genomic approaches to DNA repair and mutagenesis.

Wyrick JJ, Roberts SA.

DNA Repair (Amst). 2015 Dec;36:146-155. doi: 10.1016/j.dnarep.2015.09.018. Epub 2015 Sep 15. Review.

35.

New vectors for simple and streamlined CRISPR-Cas9 genome editing in Saccharomyces cerevisiae.

Laughery MF, Hunter T, Brown A, Hoopes J, Ostbye T, Shumaker T, Wyrick JJ.

Yeast. 2015 Dec;32(12):711-20. doi: 10.1002/yea.3098. Epub 2015 Sep 21.

36.

Strong Asymmetric Charge Carrier Dependence in Inelastic Electron Tunneling Spectroscopy of Graphene Phonons.

Natterer FD, Zhao Y, Wyrick J, Chan YH, Ruan WY, Chou MY, Watanabe K, Taniguchi T, Zhitenev NB, Stroscio JA.

Phys Rev Lett. 2015 Jun 19;114(24):245502. Epub 2015 Jun 16.

PMID:
26196985
37.

Prospective Randomized Comparison of Locked Plates Versus Nonlocked Plates for the Treatment of High-Energy Pilon Fractures.

dʼHeurle A, Kazemi N, Connelly C, Wyrick JD, Archdeacon MT, Le TT.

J Orthop Trauma. 2015 Sep;29(9):420-3. doi: 10.1097/BOT.0000000000000386.

PMID:
26165256
38.

Histone Sprocket Arginine Residues Are Important for Gene Expression, DNA Repair, and Cell Viability in Saccharomyces cerevisiae.

Hodges AJ, Gallegos IJ, Laughery MF, Meas R, Tran L, Wyrick JJ.

Genetics. 2015 Jul;200(3):795-806. doi: 10.1534/genetics.115.175885. Epub 2015 May 12.

39.

Physics. Creating and probing electron whispering-gallery modes in graphene.

Zhao Y, Wyrick J, Natterer FD, Rodriguez-Nieva JF, Lewandowski C, Watanabe K, Taniguchi T, Levitov LS, Zhitenev NB, Stroscio JA.

Science. 2015 May 8;348(6235):672-5. doi: 10.1126/science.aaa7469. Epub 2015 May 7.

40.

Management of complex elbow dislocations: a mechanistic approach.

Wyrick JD, Dailey SK, Gunzenhaeuser JM, Casstevens EC.

J Am Acad Orthop Surg. 2015 May;23(5):297-306. doi: 10.5435/JAAOS-D-14-00023. Review.

PMID:
25911662
41.

The amino-terminal tails of histones H2A and H3 coordinate efficient base excision repair, DNA damage signaling and postreplication repair in Saccharomyces cerevisiae.

Meas R, Smerdon MJ, Wyrick JJ.

Nucleic Acids Res. 2015 May 26;43(10):4990-5001. doi: 10.1093/nar/gkv372. Epub 2015 Apr 20.

42.
43.

Femoral Lengthening Over an Intramedullary Nail: A Case of Failed Distraction: A Case Report.

Dailey SK, Wyrick JD.

JBJS Case Connect. 2014 Aug 13;4(3):e68-e6. doi: 10.2106/JBJS.CC.M.00238. No abstract available.

PMID:
29252589
44.

Fix it or discard it? A retrospective analysis of functional outcomes after surgically treated patella fractures comparing ORIF with partial patellectomy.

Bonnaig NS, Casstevens C, Archdeacon MT, Connelly C, Monaco N, Wyrick JD, Le TT.

J Orthop Trauma. 2015 Feb;29(2):80-4. doi: 10.1097/BOT.0000000000000201.

PMID:
25050749
45.

High-resolution characterization of CPD hotspot formation in human fibroblasts.

Zavala AG, Morris RT, Wyrick JJ, Smerdon MJ.

Nucleic Acids Res. 2014 Jan;42(2):893-905. doi: 10.1093/nar/gkt912. Epub 2013 Oct 16.

46.

Perioperative risks associated with the operative treatment of clavicle fractures.

d'Heurle A, Le T, Grawe B, Casstevens EC, Edgington J, Archdeacon MT, Wyrick J.

Injury. 2013 Nov;44(11):1579-81. doi: 10.1016/j.injury.2013.05.007. Epub 2013 Jul 1.

PMID:
23809607
47.

Controlled argon beam-induced desulfurization of monolayer molybdenum disulfide.

Ma Q, Odenthal PM, Mann J, Le D, Wang CS, Zhu Y, Chen T, Sun D, Yamaguchi K, Tran T, Wurch M, McKinley JL, Wyrick J, Magnone K, Heinz TF, Rahman TS, Kawakami R, Bartels L.

J Phys Condens Matter. 2013 Jun 26;25(25):252201. doi: 10.1088/0953-8984/25/25/252201. Epub 2013 May 24.

PMID:
23708055
48.

Open Reduction and Internal Fixation (ORIF) of Complex 3- and 4-Part Fractures of the Proximal Humerus: Does Age Really Matter?

Grawe B, Le T, Lee T, Wyrick J.

Geriatr Orthop Surg Rehabil. 2012 Mar;3(1):27-32. doi: 10.1177/2151458511430662.

49.

Management of extra-articular fractures of the distal tibia: intramedullary nailing versus plate fixation.

Casstevens C, Le T, Archdeacon MT, Wyrick JD.

J Am Acad Orthop Surg. 2012 Nov;20(11):675-83. doi: 10.5435/JAAOS-20-11-675.

PMID:
23118133
50.

An MoS(x) structure with high affinity for adsorbate interaction.

Sun D, Lu W, Le D, Ma Q, Aminpour M, Alcántara Ortigoza M, Bobek S, Mann J, Wyrick J, Rahman TS, Bartels L.

Angew Chem Int Ed Engl. 2012 Oct 8;51(41):10284-8. doi: 10.1002/anie.201205258. Epub 2012 Sep 11. No abstract available.

PMID:
22969065

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