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Items: 1 to 50 of 66

1.

Transforming mental well-being for people with diabetes: research recommendations from Diabetes UK's 2019 Diabetes and Mental Well-Being Workshop.

Wylie TAF, Shah C, Connor R, Farmer AJ, Ismail K, Millar B, Morris A, Reynolds RM, Robertson E, Swindell R, Warren E, Holt RIG.

Diabet Med. 2019 Jun 8. doi: 10.1111/dme.14048. [Epub ahead of print]

PMID:
31177573
2.

Impaired Chylomicron Assembly Modifies Hepatic Metabolism Through Bile Acid-Dependent and Transmissible Microbial Adaptations.

Xie Y, Matsumoto H, Kennedy S, Newberry EP, Moritz W, DeBosch BJ, Moley KH, Rubin DC, Warner BW, Kau AL, Tarr PI, Wylie TN, Wylie KM, Davidson NO.

Hepatology. 2019 Apr 20. doi: 10.1002/hep.30669. [Epub ahead of print]

PMID:
31004524
3.

Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese.

Papineau A, Berhane Y, Wylie TN, Wylie KM, Sharpe S, Lung O.

Sci Rep. 2019 Apr 11;9(1):5954. doi: 10.1038/s41598-019-42355-y.

4.

Whole-Genome Sequencing of Klebsiella pneumoniae Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection.

Wylie KM, Wylie TN, Minx PJ, Rosen DA.

Front Cell Infect Microbiol. 2019 Feb 8;9:14. doi: 10.3389/fcimb.2019.00014. eCollection 2019.

5.

Host Gene Expression in Nose and Blood for the Diagnosis of Viral Respiratory Infection.

Yu J, Peterson DR, Baran AM, Bhattacharya S, Wylie TN, Falsey AR, Mariani TJ, Storch GA.

J Infect Dis. 2019 Apr 1;219(7):1151-1161. doi: 10.1093/infdis/jiy608.

PMID:
30339221
6.

Carriage of the Toxic Shock Syndrome Toxin Gene by Contemporary Community-Associated Staphylococcus aureus Isolates.

Parrish KL, Wylie KM, Reich PJ, Hogan PG, Wylie TN, Kennedy CR, Lainhart W, Hunstad DA, Burnham CD, Fritz SA.

J Pediatric Infect Dis Soc. 2018 Oct 4. doi: 10.1093/jpids/piy098. [Epub ahead of print]

PMID:
30285124
7.

Detection of Viruses in Clinical Samples by Use of Metagenomic Sequencing and Targeted Sequence Capture.

Wylie KM, Wylie TN, Buller R, Herter B, Cannella MT, Storch GA.

J Clin Microbiol. 2018 Nov 27;56(12). pii: e01123-18. doi: 10.1128/JCM.01123-18. Print 2018 Dec.

8.

Remnant Small Bowel Length in Pediatric Short Bowel Syndrome and the Correlation with Intestinal Dysbiosis and Linear Growth.

Engelstad HJ, Barron L, Moen J, Wylie TN, Wylie K, Rubin DC, Davidson N, Cade WT, Warner BB, Warner BW.

J Am Coll Surg. 2018 Oct;227(4):439-449. doi: 10.1016/j.jamcollsurg.2018.07.657. Epub 2018 Aug 2.

PMID:
30077861
9.

The vaginal eukaryotic DNA virome and preterm birth.

Wylie KM, Wylie TN, Cahill AG, Macones GA, Tuuli MG, Stout MJ.

Am J Obstet Gynecol. 2018 Aug;219(2):189.e1-189.e12. doi: 10.1016/j.ajog.2018.04.048. Epub 2018 May 5.

PMID:
29738749
10.

Carriage of Cronobacter sakazakii in the Very Preterm Infant Gut.

Chandrasekaran S, Burnham CD, Warner BB, Tarr PI, Wylie TN.

Clin Infect Dis. 2018 Jul 2;67(2):269-274. doi: 10.1093/cid/ciy062.

PMID:
29394356
11.

Analysis of the interaction of Plexin-B1 and Plexin-B2 with Rnd family proteins.

Wylie T, Garg R, Ridley AJ, Conte MR.

PLoS One. 2017 Oct 17;12(10):e0185899. doi: 10.1371/journal.pone.0185899. eCollection 2017.

12.

Status Epilepticus.

Wylie T, Murr N.

StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2019 Jan-.
2019 Jun 4.

13.

Genome Sequence of Enterovirus D68 from St. Louis, Missouri, USA, 2016.

Wylie KM, Wylie TN, Storch GA.

Genome Announc. 2017 Mar 2;5(9). pii: e01630-16. doi: 10.1128/genomeA.01630-16.

14.

Acute Hypotonia in an Infant.

Sierakowski J, Arthur J, Wylie T.

J Emerg Med. 2017 Jun;52(6):e245-e247. doi: 10.1016/j.jemermed.2016.12.037. Epub 2017 Feb 4.

PMID:
28174033
15.

How Do Physical Therapists Treat People with Knee Osteoarthritis, and What Drives Their Clinical Decisions? A Population-Based Cross-Sectional Survey.

da Costa BR, Vieira ER, Gadotti IC, Colosi C, Rylak J, Wylie T, Armijo-Olivo S.

Physiother Can. 2017;69(1):30-37. doi: 10.3138/ptc.2015-83.

16.

High-throughput sequencing of cerebrospinal fluid for diagnosis of chronic Propionibacterium acnes meningitis in an allogeneic stem cell transplant recipient.

Wylie KM, Blanco-Guzman M, Wylie TN, Lawrence SJ, Ghobadi A, DiPersio JF, Storch GA.

Transpl Infect Dis. 2016 Apr;18(2):227-33. doi: 10.1111/tid.12512. Epub 2016 Mar 31.

PMID:
26895706
17.

Impact of Video Discharge Instructions for Pediatric Fever and Closed Head Injury from the Emergency Department.

Ismail S, McIntosh M, Kalynych C, Joseph M, Wylie T, Butterfield R, Smotherman C, Kraemer DF, Osian SR.

J Emerg Med. 2016 Mar;50(3):e177-83. doi: 10.1016/j.jemermed.2015.10.006. Epub 2016 Jan 21.

PMID:
26806318
18.

The transcriptional profile of coronary arteritis in Kawasaki disease.

Rowley AH, Wylie KM, Kim KY, Pink AJ, Yang A, Reindel R, Baker SC, Shulman ST, Orenstein JM, Lingen MW, Weinstock GM, Wylie TN.

BMC Genomics. 2015 Dec 18;16:1076. doi: 10.1186/s12864-015-2323-5.

19.

RNA Sequencing of Tumor-Associated Microglia Reveals Ccl5 as a Stromal Chemokine Critical for Neurofibromatosis-1 Glioma Growth.

Solga AC, Pong WW, Kim KY, Cimino PJ, Toonen JA, Walker J, Wylie T, Magrini V, Griffith M, Griffith OL, Ly A, Ellisman MH, Mardis ER, Gutmann DH.

Neoplasia. 2015 Oct;17(10):776-88. doi: 10.1016/j.neo.2015.10.002.

20.

Whole genome SNP genotype piecemeal imputation.

Wang Y, Wylie T, Stothard P, Lin G.

BMC Bioinformatics. 2015 Oct 23;16:340. doi: 10.1186/s12859-015-0770-2.

21.

Enhanced virome sequencing using targeted sequence capture.

Wylie TN, Wylie KM, Herter BN, Storch GA.

Genome Res. 2015 Dec;25(12):1910-20. doi: 10.1101/gr.191049.115. Epub 2015 Sep 22.

22.

Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains.

Rodriguez M, Hogan PG, Satola SW, Crispell E, Wylie T, Gao H, Sodergren E, Weinstock GM, Burnham CA, Fritz SA.

Medicine (Baltimore). 2015 Sep;94(37):e1534. doi: 10.1097/MD.0000000000001534.

23.

Genome Modeling System: A Knowledge Management Platform for Genomics.

Griffith M, Griffith OL, Smith SM, Ramu A, Callaway MB, Brummett AM, Kiwala MJ, Coffman AC, Regier AA, Oberkfell BJ, Sanderson GE, Mooney TP, Nutter NG, Belter EA, Du F, Long RL, Abbott TE, Ferguson IT, Morton DL, Burnett MM, Weible JV, Peck JB, Dukes A, McMichael JF, Lolofie JT, Derickson BR, Hundal J, Skidmore ZL, Ainscough BJ, Dees ND, Schierding WS, Kandoth C, Kim KH, Lu C, Harris CC, Maher N, Maher CA, Magrini VJ, Abbott BS, Chen K, Clark E, Das I, Fan X, Hawkins AE, Hepler TG, Wylie TN, Leonard SM, Schroeder WE, Shi X, Carmichael LK, Weil MR, Wohlstadter RW, Stiehr G, McLellan MD, Pohl CS, Miller CA, Koboldt DC, Walker JR, Eldred JM, Larson DE, Dooling DJ, Ding L, Mardis ER, Wilson RK.

PLoS Comput Biol. 2015 Jul 9;11(7):e1004274. doi: 10.1371/journal.pcbi.1004274. eCollection 2015 Jul.

24.

Development and Evaluation of an Enterovirus D68 Real-Time Reverse Transcriptase PCR Assay.

Wylie TN, Wylie KM, Buller RS, Cannella M, Storch GA.

J Clin Microbiol. 2015 Aug;53(8):2641-7. doi: 10.1128/JCM.00923-15. Epub 2015 Jun 10.

25.

Enterovirus D68-associated acute respiratory distress syndrome in adult, United States, 2014.

Farrell JJ, Ikladios O, Wylie KM, O'Rourke LM, Lowery KS, Cromwell JS, Wylie TN, Melendez EL, Makhoul Y, Sampath R, Bonomo RA, Storch GA.

Emerg Infect Dis. 2015 May;21(5):914-6. doi: 10.3201/eid2105.142033. No abstract available.

26.

Genome sequence of enterovirus D68 from St. Louis, Missouri, USA.

Wylie KM, Wylie TN, Orvedahl A, Buller RS, Herter BN, Magrini V, Wilson RK, Storch GA.

Emerg Infect Dis. 2015 Jan;21(1):184-6. doi: 10.3201/eid2101.141605. No abstract available.

27.

Predictors of research use among staff in aboriginal addiction treatment programs serving women.

Davey CJ, Niccols A, Henderson J, Dobbins M, Sword W, Dell C, Wylie T, Sauve E.

J Ethn Subst Abuse. 2014;13(4):315-36. doi: 10.1080/15332640.2014.938211.

PMID:
25397635
28.

RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease.

Solga AC, Pong WW, Walker J, Wylie T, Magrini V, Apicelli AJ, Griffith M, Griffith OL, Kohsaka S, Wu GF, Brody DL, Mardis ER, Gutmann DH.

Glia. 2015 Apr;63(4):531-548. doi: 10.1002/glia.22754. Epub 2014 Sep 24.

29.

Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections.

Carl MA, Ndao IM, Springman AC, Manning SD, Johnson JR, Johnston BD, Burnham CA, Weinstock ES, Weinstock GM, Wylie TN, Mitreva M, Abubucker S, Zhou Y, Stevens HJ, Hall-Moore C, Julian S, Shaikh N, Warner BB, Tarr PI.

Clin Infect Dis. 2014 May;58(9):1211-8. doi: 10.1093/cid/ciu084. Epub 2014 Mar 18.

30.

Protein chain pair simplification under the discrete Fréchet distance.

Wylie T, Zhu B.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1372-83. doi: 10.1109/TCBB.2013.17.

PMID:
24407296
31.

F11R is a novel monocyte prognostic biomarker for malignant glioma.

Pong WW, Walker J, Wylie T, Magrini V, Luo J, Emnett RJ, Choi J, Cooper ML, Griffith M, Griffith OL, Rubin JB, Fuller GN, Piwnica-Worms D, Feng X, Hambardzumyan D, DiPersio JF, Mardis ER, Gutmann DH.

PLoS One. 2013 Oct 11;8(10):e77571. doi: 10.1371/journal.pone.0077571. eCollection 2013.

32.

Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis.

Turabelidze G, Lawrence SJ, Gao H, Sodergren E, Weinstock GM, Abubucker S, Wylie T, Mitreva M, Shaikh N, Gautom R, Tarr PI.

J Clin Microbiol. 2013 Dec;51(12):3950-4. doi: 10.1128/JCM.01930-13. Epub 2013 Sep 18.

33.

Genomic impact of transient low-dose decitabine treatment on primary AML cells.

Klco JM, Spencer DH, Lamprecht TL, Sarkaria SM, Wylie T, Magrini V, Hundal J, Walker J, Varghese N, Erdmann-Gilmore P, Lichti CF, Meyer MR, Townsend RR, Wilson RK, Mardis ER, Ley TJ.

Blood. 2013 Feb 28;121(9):1633-43. doi: 10.1182/blood-2012-09-459313. Epub 2013 Jan 7.

34.

Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma.

Gutmann DH, McLellan MD, Hussain I, Wallis JW, Fulton LL, Fulton RS, Magrini V, Demeter R, Wylie T, Kandoth C, Leonard JR, Guha A, Miller CA, Ding L, Mardis ER.

Genome Res. 2013 Mar;23(3):431-9. doi: 10.1101/gr.142604.112. Epub 2012 Dec 5.

35.

The origin and evolution of mutations in acute myeloid leukemia.

Welch JS, Ley TJ, Link DC, Miller CA, Larson DE, Koboldt DC, Wartman LD, Lamprecht TL, Liu F, Xia J, Kandoth C, Fulton RS, McLellan MD, Dooling DJ, Wallis JW, Chen K, Harris CC, Schmidt HK, Kalicki-Veizer JM, Lu C, Zhang Q, Lin L, O'Laughlin MD, McMichael JF, Delehaunty KD, Fulton LA, Magrini VJ, McGrath SD, Demeter RT, Vickery TL, Hundal J, Cook LL, Swift GW, Reed JP, Alldredge PA, Wylie TN, Walker JR, Watson MA, Heath SE, Shannon WD, Varghese N, Nagarajan R, Payton JE, Baty JD, Kulkarni S, Klco JM, Tomasson MH, Westervelt P, Walter MJ, Graubert TA, DiPersio JF, Ding L, Mardis ER, Wilson RK.

Cell. 2012 Jul 20;150(2):264-78. doi: 10.1016/j.cell.2012.06.023.

36.

Reduced use of occult bacteremia blood screens by emergency medicine physicians using immunization registry for children presenting with fever without a source.

Zeretzke CM, McIntosh MS, Kalynych CJ, Wylie T, Lott M, Wood D.

Pediatr Emerg Care. 2012 Jul;28(7):640-5. doi: 10.1097/PEC.0b013e31825cfd3e.

PMID:
22743750
37.

Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting.

Matsushita H, Vesely MD, Koboldt DC, Rickert CG, Uppaluri R, Magrini VJ, Arthur CD, White JM, Chen YS, Shea LK, Hundal J, Wendl MC, Demeter R, Wylie T, Allison JP, Smyth MJ, Old LJ, Mardis ER, Schreiber RD.

Nature. 2012 Feb 8;482(7385):400-4. doi: 10.1038/nature10755.

38.

The curriculum development process for an international emergency medicine rotation.

McIntosh M, Kalynych C, Devos E, Akhlaghi M, Wylie T.

Teach Learn Med. 2012;24(1):71-80. doi: 10.1080/10401334.2012.641491.

PMID:
22250939
39.

Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue.

Duncavage EJ, Magrini V, Becker N, Armstrong JR, Demeter RT, Wylie T, Abel HJ, Pfeifer JD.

J Mol Diagn. 2011 May;13(3):325-33. doi: 10.1016/j.jmoldx.2011.01.006.

40.

DNMT3A mutations in acute myeloid leukemia.

Ley TJ, Ding L, Walter MJ, McLellan MD, Lamprecht T, Larson DE, Kandoth C, Payton JE, Baty J, Welch J, Harris CC, Lichti CF, Townsend RR, Fulton RS, Dooling DJ, Koboldt DC, Schmidt H, Zhang Q, Osborne JR, Lin L, O'Laughlin M, McMichael JF, Delehaunty KD, McGrath SD, Fulton LA, Magrini VJ, Vickery TL, Hundal J, Cook LL, Conyers JJ, Swift GW, Reed JP, Alldredge PA, Wylie T, Walker J, Kalicki J, Watson MA, Heath S, Shannon WD, Varghese N, Nagarajan R, Westervelt P, Tomasson MH, Link DC, Graubert TA, DiPersio JF, Mardis ER, Wilson RK.

N Engl J Med. 2010 Dec 16;363(25):2424-33. doi: 10.1056/NEJMoa1005143. Epub 2010 Nov 10.

41.

Next-generation sequencing identifies the natural killer cell microRNA transcriptome.

Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER.

Genome Res. 2010 Nov;20(11):1590-604. doi: 10.1101/gr.107995.110. Epub 2010 Oct 8.

42.

Complete characterization of the microRNAome in a patient with acute myeloid leukemia.

Ramsingh G, Koboldt DC, Trissal M, Chiappinelli KB, Wylie T, Koul S, Chang LW, Nagarajan R, Fehniger TA, Goodfellow P, Magrini V, Wilson RK, Ding L, Ley TJ, Mardis ER, Link DC.

Blood. 2010 Dec 9;116(24):5316-26. doi: 10.1182/blood-2010-05-285395. Epub 2010 Sep 28.

43.

Stabilization and treatment of dental avulsions and fractures by emergency physicians using just-in-time training.

McIntosh MS, Konzelmann J, Smith J, Kalynych CJ, Wears RL, Schneider H, Wylie T, Kaminski A, Matar-Joseph M.

Ann Emerg Med. 2009 Oct;54(4):585-92. doi: 10.1016/j.annemergmed.2009.06.510. Epub 2009 Aug 22.

PMID:
19700221
44.

Recurring mutations found by sequencing an acute myeloid leukemia genome.

Mardis ER, Ding L, Dooling DJ, Larson DE, McLellan MD, Chen K, Koboldt DC, Fulton RS, Delehaunty KD, McGrath SD, Fulton LA, Locke DP, Magrini VJ, Abbott RM, Vickery TL, Reed JS, Robinson JS, Wylie T, Smith SM, Carmichael L, Eldred JM, Harris CC, Walker J, Peck JB, Du F, Dukes AF, Sanderson GE, Brummett AM, Clark E, McMichael JF, Meyer RJ, Schindler JK, Pohl CS, Wallis JW, Shi X, Lin L, Schmidt H, Tang Y, Haipek C, Wiechert ME, Ivy JV, Kalicki J, Elliott G, Ries RE, Payton JE, Westervelt P, Tomasson MH, Watson MA, Baty J, Heath S, Shannon WD, Nagarajan R, Link DC, Walter MJ, Graubert TA, DiPersio JF, Wilson RK, Ley TJ.

N Engl J Med. 2009 Sep 10;361(11):1058-66. doi: 10.1056/NEJMoa0903840. Epub 2009 Aug 5.

45.

VarScan: variant detection in massively parallel sequencing of individual and pooled samples.

Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L.

Bioinformatics. 2009 Sep 1;25(17):2283-5. doi: 10.1093/bioinformatics/btp373. Epub 2009 Jun 19.

46.

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

Ley TJ, Mardis ER, Ding L, Fulton B, McLellan MD, Chen K, Dooling D, Dunford-Shore BH, McGrath S, Hickenbotham M, Cook L, Abbott R, Larson DE, Koboldt DC, Pohl C, Smith S, Hawkins A, Abbott S, Locke D, Hillier LW, Miner T, Fulton L, Magrini V, Wylie T, Glasscock J, Conyers J, Sander N, Shi X, Osborne JR, Minx P, Gordon D, Chinwalla A, Zhao Y, Ries RE, Payton JE, Westervelt P, Tomasson MH, Watson M, Baty J, Ivanovich J, Heath S, Shannon WD, Nagarajan R, Walter MJ, Link DC, Graubert TA, DiPersio JF, Wilson RK.

Nature. 2008 Nov 6;456(7218):66-72. doi: 10.1038/nature07485.

47.

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.

Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M.

BMC Genomics. 2008 Nov 4;9:525. doi: 10.1186/1471-2164-9-525.

48.

Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics.

Martin J, Abubucker S, Wylie T, Yin Y, Wang Z, Mitreva M.

Nucleic Acids Res. 2009 Jan;37(Database issue):D571-8. doi: 10.1093/nar/gkn744. Epub 2008 Oct 21.

49.

Genome analysis of the platypus reveals unique signatures of evolution.

Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordóñez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AF, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ES, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Kriegs JO, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux JL, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Nefedov M, de Jong PJ, Renfree MB, Mardis ER, Wilson RK.

Nature. 2008 May 8;453(7192):175-83. doi: 10.1038/nature06936. Erratum in: Nature. 2008 Sep 11;455(7210):256. Nefedov, Mikhail [added]; de Jong, Pieter J [added].

50.

Whole-genome sequencing and variant discovery in C. elegans.

Hillier LW, Marth GT, Quinlan AR, Dooling D, Fewell G, Barnett D, Fox P, Glasscock JI, Hickenbotham M, Huang W, Magrini VJ, Richt RJ, Sander SN, Stewart DA, Stromberg M, Tsung EF, Wylie T, Schedl T, Wilson RK, Mardis ER.

Nat Methods. 2008 Feb;5(2):183-8. doi: 10.1038/nmeth.1179. Epub 2008 Jan 20.

PMID:
18204455

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