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Items: 44

1.

Association of the eukaryotic vaginal virome with prophylactic antibiotic exposure and reproductive outcomes in a subfertile population undergoing in vitro fertilisation: a prospective exploratory study.

Eskew AM, Stout MJ, Bedrick BS, Riley JK, Omurtag KR, Jimenez PT, Odem RR, Ratts VS, Keller SL, Jungheim ES, Wylie KM.

BJOG. 2019 Sep 17. doi: 10.1111/1471-0528.15951. [Epub ahead of print]

PMID:
31529767
2.

Impaired Chylomicron Assembly Modifies Hepatic Metabolism Through Bile Acid-Dependent and Transmissible Microbial Adaptations.

Xie Y, Matsumoto H, Kennedy S, Newberry EP, Moritz W, DeBosch BJ, Moley KH, Rubin DC, Warner BW, Kau AL, Tarr PI, Wylie TN, Wylie KM, Davidson NO.

Hepatology. 2019 Oct;70(4):1168-1184. doi: 10.1002/hep.30669. Epub 2019 May 23.

PMID:
31004524
3.

Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese.

Papineau A, Berhane Y, Wylie TN, Wylie KM, Sharpe S, Lung O.

Sci Rep. 2019 Apr 11;9(1):5954. doi: 10.1038/s41598-019-42355-y.

4.

Dynamic host immune response in virus-associated cancers.

Cao S, Wylie KM, Wyczalkowski MA, Karpova A, Ley J, Sun S, Mashl RJ, Liang WW, Wang X, Johnson K, DiPersio JF, Gay H, Ratner L, Chen F, Adkins DR, Ding L.

Commun Biol. 2019 Mar 22;2:109. doi: 10.1038/s42003-019-0352-3. eCollection 2019.

5.

Whole-Genome Sequencing of Klebsiella pneumoniae Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection.

Wylie KM, Wylie TN, Minx PJ, Rosen DA.

Front Cell Infect Microbiol. 2019 Feb 8;9:14. doi: 10.3389/fcimb.2019.00014. eCollection 2019.

6.

Differences in the lower airway microbiota of infants with and without cystic fibrosis.

Frayman KB, Wylie KM, Armstrong DS, Carzino R, Davis SD, Ferkol TW, Grimwood K, Storch GA, Ranganathan SC.

J Cyst Fibros. 2019 Sep;18(5):646-652. doi: 10.1016/j.jcf.2018.12.003. Epub 2018 Dec 21.

PMID:
30580994
7.

Evaluation of patient- versus provider-collected vaginal swabs for microbiome analysis during pregnancy.

Wylie KM, Blankenship SA, Tuuli MG, Macones GA, Stout MJ.

BMC Res Notes. 2018 Oct 5;11(1):706. doi: 10.1186/s13104-018-3809-4.

8.

Carriage of the Toxic Shock Syndrome Toxin Gene by Contemporary Community-Associated Staphylococcus aureus Isolates.

Parrish KL, Wylie KM, Reich PJ, Hogan PG, Wylie TN, Kennedy CR, Lainhart W, Hunstad DA, Burnham CD, Fritz SA.

J Pediatric Infect Dis Soc. 2019 Nov 6;8(5):470-473. doi: 10.1093/jpids/piy098.

9.

Detection of Viruses in Clinical Samples by Use of Metagenomic Sequencing and Targeted Sequence Capture.

Wylie KM, Wylie TN, Buller R, Herter B, Cannella MT, Storch GA.

J Clin Microbiol. 2018 Nov 27;56(12). pii: e01123-18. doi: 10.1128/JCM.01123-18. Print 2018 Dec.

10.

The vaginal eukaryotic DNA virome and preterm birth.

Wylie KM, Wylie TN, Cahill AG, Macones GA, Tuuli MG, Stout MJ.

Am J Obstet Gynecol. 2018 Aug;219(2):189.e1-189.e12. doi: 10.1016/j.ajog.2018.04.048. Epub 2018 May 5.

11.

Nucleotide resolution mapping of influenza A virus nucleoprotein-RNA interactions reveals RNA features required for replication.

Williams GD, Townsend D, Wylie KM, Kim PJ, Amarasinghe GK, Kutluay SB, Boon ACM.

Nat Commun. 2018 Jan 31;9(1):465. doi: 10.1038/s41467-018-02886-w.

12.

Association of Antibiotics, Airway Microbiome, and Inflammation in Infants with Cystic Fibrosis.

Pittman JE, Wylie KM, Akers K, Storch GA, Hatch J, Quante J, Frayman KB, Clarke N, Davis M, Stick SM, Hall GL, Montgomery G, Ranganathan S, Davis SD, Ferkol TW; Australian Respiratory Early Surveillance Team for Cystic Fibrosis.

Ann Am Thorac Soc. 2017 Oct;14(10):1548-1555. doi: 10.1513/AnnalsATS.201702-121OC.

13.

BreakPoint Surveyor: a pipeline for structural variant visualization.

Wyczalkowski MA, Wylie KM, Cao S, McLellan MD, Flynn J, Huang M, Ye K, Fan X, Chen K, Wendl MC, Ding L.

Bioinformatics. 2017 Oct 1;33(19):3121-3122. doi: 10.1093/bioinformatics/btx362.

14.

Early pregnancy vaginal microbiome trends and preterm birth.

Stout MJ, Zhou Y, Wylie KM, Tarr PI, Macones GA, Tuuli MG.

Am J Obstet Gynecol. 2017 Sep;217(3):356.e1-356.e18. doi: 10.1016/j.ajog.2017.05.030. Epub 2017 May 23.

15.

The lower airway microbiota in early cystic fibrosis lung disease: a longitudinal analysis.

Frayman KB, Armstrong DS, Carzino R, Ferkol TW, Grimwood K, Storch GA, Teo SM, Wylie KM, Ranganathan SC.

Thorax. 2017 Dec;72(12):1104-1112. doi: 10.1136/thoraxjnl-2016-209279. Epub 2017 Mar 9.

PMID:
28280235
16.

Genome Sequence of Enterovirus D68 from St. Louis, Missouri, USA, 2016.

Wylie KM, Wylie TN, Storch GA.

Genome Announc. 2017 Mar 2;5(9). pii: e01630-16. doi: 10.1128/genomeA.01630-16.

17.

The Virome of the Human Respiratory Tract.

Wylie KM.

Clin Chest Med. 2017 Mar;38(1):11-19. doi: 10.1016/j.ccm.2016.11.001. Epub 2016 Dec 10. Review.

PMID:
28159153
18.

Resurgence of Rotavirus Genotype G12 in St. Louis During the 2014-2015 Rotavirus Season.

Wylie KM, Stanley KM, TeKippe EM, Mihindukulasuriya K, Storch GA.

J Pediatric Infect Dis Soc. 2017 Nov 24;6(4):346-351. doi: 10.1093/jpids/piw065.

19.

Environmental Enteric Dysfunction and the Fecal Microbiota in Malawian Children.

Ordiz MI, Stephenson K, Agapova S, Wylie KM, Maleta K, Martin J, Trehan I, Tarr PI, Manary MJ.

Am J Trop Med Hyg. 2017 Feb 8;96(2):473-476. doi: 10.4269/ajtmh.16-0617. Epub 2016 Dec 12.

20.

Tissue polymerase chain reaction for the diagnosis of cytomegalovirus disease after allogeneic hematopoietic cell transplantation.

Rashidi A, Vij KR, Buller RS, Wylie KM, Storch GA, DiPersio JF.

Am J Hematol. 2017 Feb;92(2):E19-E20. doi: 10.1002/ajh.24609. No abstract available.

21.

High-throughput sequencing of cerebrospinal fluid for diagnosis of chronic Propionibacterium acnes meningitis in an allogeneic stem cell transplant recipient.

Wylie KM, Blanco-Guzman M, Wylie TN, Lawrence SJ, Ghobadi A, DiPersio JF, Storch GA.

Transpl Infect Dis. 2016 Apr;18(2):227-33. doi: 10.1111/tid.12512. Epub 2016 Mar 31.

PMID:
26895706
22.

The transcriptional profile of coronary arteritis in Kawasaki disease.

Rowley AH, Wylie KM, Kim KY, Pink AJ, Yang A, Reindel R, Baker SC, Shulman ST, Orenstein JM, Lingen MW, Weinstock GM, Wylie TN.

BMC Genomics. 2015 Dec 18;16:1076. doi: 10.1186/s12864-015-2323-5.

23.

Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens.

Zhou Y, Wylie KM, El Feghaly RE, Mihindukulasuriya KA, Elward A, Haslam DB, Storch GA, Weinstock GM.

J Clin Microbiol. 2016 Feb;54(2):368-75. doi: 10.1128/JCM.01965-15. Epub 2015 Dec 4.

24.

Emergence of Rotavirus G12P[8] in St. Louis During the 2012-2013 Rotavirus Season.

Wylie KM, Weinstock GM, Storch GA.

J Pediatric Infect Dis Soc. 2015 Dec;4(4):e84-9. doi: 10.1093/jpids/piu090. Epub 2014 Sep 15.

25.

mBLAST: Keeping up with the sequencing explosion for (meta)genome analysis.

Davis C, Kota K, Baldhandapani V, Gong W, Abubucker S, Becker E, Martin J, Wylie KM, Khetani R, Hudson ME, Weinstock GM, Mitreva M.

J Data Mining Genomics Proteomics. 2015 Aug;4(3). pii: 135. Epub 2013 Jul 31.

26.

Enhanced virome sequencing using targeted sequence capture.

Wylie TN, Wylie KM, Herter BN, Storch GA.

Genome Res. 2015 Dec;25(12):1910-20. doi: 10.1101/gr.191049.115. Epub 2015 Sep 22.

27.

Development and Evaluation of an Enterovirus D68 Real-Time Reverse Transcriptase PCR Assay.

Wylie TN, Wylie KM, Buller RS, Cannella M, Storch GA.

J Clin Microbiol. 2015 Aug;53(8):2641-7. doi: 10.1128/JCM.00923-15. Epub 2015 Jun 10.

28.

Enterovirus D68-associated acute respiratory distress syndrome in adult, United States, 2014.

Farrell JJ, Ikladios O, Wylie KM, O'Rourke LM, Lowery KS, Cromwell JS, Wylie TN, Melendez EL, Makhoul Y, Sampath R, Bonomo RA, Storch GA.

Emerg Infect Dis. 2015 May;21(5):914-6. doi: 10.3201/eid2105.142033. No abstract available.

29.

Genome sequence of enterovirus D68 from St. Louis, Missouri, USA.

Wylie KM, Wylie TN, Orvedahl A, Buller RS, Herter BN, Magrini V, Wilson RK, Storch GA.

Emerg Infect Dis. 2015 Jan;21(1):184-6. doi: 10.3201/eid2101.141605. No abstract available.

30.

Metagenomic analysis of double-stranded DNA viruses in healthy adults.

Wylie KM, Mihindukulasuriya KA, Zhou Y, Sodergren E, Storch GA, Weinstock GM.

BMC Biol. 2014 Sep 10;12:71. doi: 10.1186/s12915-014-0071-7.

31.

Exploration of bacterial community classes in major human habitats.

Zhou Y, Mihindukulasuriya KA, Gao H, La Rosa PS, Wylie KM, Martin JC, Kota K, Shannon WD, Mitreva M, Sodergren E, Weinstock GM.

Genome Biol. 2014 May 7;15(5):R66. doi: 10.1186/gb-2014-15-5-r66.

32.

Virome genomics: a tool for defining the human virome.

Wylie KM, Weinstock GM, Storch GA.

Curr Opin Microbiol. 2013 Aug;16(4):479-84. doi: 10.1016/j.mib.2013.04.006. Epub 2013 May 23. Review.

33.

A proautophagic antiviral role for the cellular prion protein identified by infection with a herpes simplex virus 1 ICP34.5 mutant.

Korom M, Wylie KM, Wang H, Davis KL, Sangabathula MS, Delassus GS, Morrison LA.

J Virol. 2013 May;87(10):5882-94. doi: 10.1128/JVI.02559-12. Epub 2013 Mar 13.

34.

Biogeography of the ecosystems of the healthy human body.

Zhou Y, Gao H, Mihindukulasuriya KA, La Rosa PS, Wylie KM, Vishnivetskaya T, Podar M, Warner B, Tarr PI, Nelson DE, Fortenberry JD, Holland MJ, Burr SE, Shannon WD, Sodergren E, Weinstock GM.

Genome Biol. 2013 Jan 14;14(1):R1. doi: 10.1186/gb-2013-14-1-r1.

35.

Increased prevalence of anellovirus in pediatric patients with fever.

McElvania TeKippe E, Wylie KM, Deych E, Sodergren E, Weinstock G, Storch GA.

PLoS One. 2012;7(11):e50937. doi: 10.1371/journal.pone.0050937. Epub 2012 Nov 30.

36.

The "most wanted" taxa from the human microbiome for whole genome sequencing.

Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, Hepburn T, Hu P, Sodergren E, Liolios K, Huot-Creasy H, Birren BW, Earl AM.

PLoS One. 2012;7(7):e41294. doi: 10.1371/journal.pone.0041294. Epub 2012 Jul 26.

37.

Novel bacterial taxa in the human microbiome.

Wylie KM, Truty RM, Sharpton TJ, Mihindukulasuriya KA, Zhou Y, Gao H, Sodergren E, Weinstock GM, Pollard KS.

PLoS One. 2012;7(6):e35294. doi: 10.1371/journal.pone.0035294. Epub 2012 Jun 13.

38.

Sequence analysis of the human virome in febrile and afebrile children.

Wylie KM, Mihindukulasuriya KA, Sodergren E, Weinstock GM, Storch GA.

PLoS One. 2012;7(6):e27735. doi: 10.1371/journal.pone.0027735. Epub 2012 Jun 13.

39.

Emerging view of the human virome.

Wylie KM, Weinstock GM, Storch GA.

Transl Res. 2012 Oct;160(4):283-90. doi: 10.1016/j.trsl.2012.03.006. Epub 2012 Apr 24. Review.

40.

Astrovirus MLB2 viremia in febrile child.

Holtz LR, Wylie KM, Sodergren E, Jiang Y, Franz CJ, Weinstock GM, Storch GA, Wang D.

Emerg Infect Dis. 2011 Nov;17(11):2050-2. doi: 10.3201/eid1711.110496.

41.

Herpes simplex virus 2 UL13 protein kinase disrupts nuclear lamins.

Cano-Monreal GL, Wylie KM, Cao F, Tavis JE, Morrison LA.

Virology. 2009 Sep 15;392(1):137-47. doi: 10.1016/j.virol.2009.06.051. Epub 2009 Jul 28.

43.

Herpes simplex virus virion host shutoff attenuates establishment of the antiviral state.

Pasieka TJ, Lu B, Crosby SD, Wylie KM, Morrison LA, Alexander DE, Menachery VD, Leib DA.

J Virol. 2008 Jun;82(11):5527-35. doi: 10.1128/JVI.02047-07. Epub 2008 Mar 26.

44.

Selective ablation of virion host shutoff protein RNase activity attenuates herpes simplex virus 2 in mice.

Korom M, Wylie KM, Morrison LA.

J Virol. 2008 Apr;82(7):3642-53. doi: 10.1128/JVI.02409-07. Epub 2008 Jan 30.

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