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Items: 19


Mycobiome diversity: high-throughput sequencing and identification of fungi.

Nilsson RH, Anslan S, Bahram M, Wurzbacher C, Baldrian P, Tedersoo L.

Nat Rev Microbiol. 2019 Jan;17(2):95-109. doi: 10.1038/s41579-018-0116-y. Review.


Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding.

Anslan S, Nilsson RH, Wurzbacher C, Baldrian P, Leho Tedersoo, Bahram M.

MycoKeys. 2018 Sep 11;(39):29-40. doi: 10.3897/mycokeys.39.28109. eCollection 2018.


Introducing ribosomal tandem repeat barcoding for fungi.

Wurzbacher C, Larsson E, Bengtsson-Palme J, Van den Wyngaert S, Svantesson S, Kristiansson E, Kagami M, Nilsson RH.

Mol Ecol Resour. 2019 Jan;19(1):118-127. doi: 10.1111/1755-0998.12944. Epub 2018 Oct 24.


Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.

Bengtsson-Palme J, Richardson RT, Meola M, Wurzbacher C, Tremblay ÉD, Thorell K, Kanger K, Eriksson KM, Bilodeau GJ, Johnson RM, Hartmann M, Nilsson RH.

Bioinformatics. 2018 Dec 1;34(23):4027-4033. doi: 10.1093/bioinformatics/bty482.


Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria.

Garcia SL, Buck M, Hamilton JJ, Wurzbacher C, Grossart HP, McMahon KD, Eiler A.

mSphere. 2018 May 30;3(3). pii: e00202-18. doi: 10.1128/mSphere.00202-18. Print 2018 Jun 27.


Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica.

Rojas-Jimenez K, Wurzbacher C, Bourne EC, Chiuchiolo A, Priscu JC, Grossart HP.

Sci Rep. 2017 Nov 10;7(1):15348. doi: 10.1038/s41598-017-15598-w.


Integrating chytrid fungal parasites into plankton ecology: research gaps and needs.

Frenken T, Alacid E, Berger SA, Bourne EC, Gerphagnon M, Grossart HP, Gsell AS, Ibelings BW, Kagami M, Küpper FC, Letcher PM, Loyau A, Miki T, Nejstgaard JC, Rasconi S, Reñé A, Rohrlack T, Rojas-Jimenez K, Schmeller DS, Scholz B, Seto K, Sime-Ngando T, Sukenik A, Van de Waal DB, Van den Wyngaert S, Van Donk E, Wolinska J, Wurzbacher C, Agha R.

Environ Microbiol. 2017 Oct;19(10):3802-3822. doi: 10.1111/1462-2920.13827. Epub 2017 Jul 13. Review.


Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds.

Wurzbacher C, Nilsson RH, Rautio M, Peura S.

ISME J. 2017 Aug;11(8):1938-1941. doi: 10.1038/ismej.2017.54. Epub 2017 Apr 21.


DNA metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single-taxon bacterial bloom.

Wurzbacher C, Attermeyer K, Kettner MT, Flintrop C, Warthmann N, Hilt S, Grossart HP, Monaghan MT.

Environ Microbiol Rep. 2017 Aug;9(4):383-388. doi: 10.1111/1758-2229.12540. Epub 2017 Jun 27.


Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment.

Wurzbacher C, Fuchs A, Attermeyer K, Frindte K, Grossart HP, Hupfer M, Casper P, Monaghan MT.

Microbiome. 2017 Apr 8;5(1):41. doi: 10.1186/s40168-017-0255-9.


Metabarcoding-based fungal diversity on coarse and fine particulate organic matter in a first-order stream in Nova Scotia, Canada.

Wurzbacher C, Grimmett IJ, Bärlocher F.

Version 2. F1000Res. 2015 Nov 30 [revised 2016 Jan 1];4:1378. doi: 10.12688/f1000research.7359.2. eCollection 2015.


Induction of neutralizing antibodies specific for the envelope proteins of the koala retrovirus by immunization with recombinant proteins or with DNA.

Fiebig U, Dieckhoff B, Wurzbacher C, Möller A, Kurth R, Denner J.

Virol J. 2015 Apr 30;12:68. doi: 10.1186/s12985-015-0296-2.


Microbial diversity and community respiration in freshwater sediments influenced by artificial light at night.

Hölker F, Wurzbacher C, Weißenborn C, Monaghan MT, Holzhauer SI, Premke K.

Philos Trans R Soc Lond B Biol Sci. 2015 May 5;370(1667). pii: 20140130. doi: 10.1098/rstb.2014.0130.


Effects of light and autochthonous carbon additions on microbial turnover of allochthonous organic carbon and community composition.

Attermeyer K, Tittel J, Allgaier M, Frindte K, Wurzbacher C, Hilt S, Kamjunke N, Grossart HP.

Microb Ecol. 2015 Feb;69(2):361-71. doi: 10.1007/s00248-014-0549-4. Epub 2014 Dec 17.


Importance of saprotrophic freshwater fungi for pollen degradation.

Wurzbacher C, Rösel S, Rychła A, Grossart HP.

PLoS One. 2014 Apr 14;9(4):e94643. doi: 10.1371/journal.pone.0094643. eCollection 2014.


Distribution of acI-Actinorhodopsin genes in Baltic Sea salinity gradients indicates adaptation of facultative freshwater photoheterotrophs to brackish waters.

Salka I, Wurzbacher C, Garcia SL, Labrenz M, Jürgens K, Grossart HP.

Environ Microbiol. 2014 Feb;16(2):586-97. doi: 10.1111/1462-2920.12185. Epub 2013 Jul 10.


Environmental actinorhodopsin expression revealed by a new in situ filtration and fixation sampler.

Wurzbacher C, Salka I, Grossart HP.

Environ Microbiol Rep. 2012 Oct;4(5):491-7. doi: 10.1111/j.1758-2229.2012.00350.x. Epub 2012 May 7.


Improved detection and identification of aquatic fungi and chitin in aquatic environments.

Wurzbacher C, Grossart HP.

Mycologia. 2012 Nov-Dec;104(6):1267-71. doi: 10.3852/11-225. Epub 2012 Aug 14.


Generation of neutralising antibodies against porcine endogenous retroviruses (PERVs).

Kaulitz D, Fiebig U, Eschricht M, Wurzbacher C, Kurth R, Denner J.

Virology. 2011 Mar 1;411(1):78-86. doi: 10.1016/j.virol.2010.12.032. Epub 2011 Jan 14.

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