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Items: 1 to 50 of 123

1.

Single-molecule polarization microscopy of DNA intercalators sheds light on the structure of S-DNA.

Backer AS, Biebricher AS, King GA, Wuite GJL, Heller I, Peterman EJG.

Sci Adv. 2019 Mar 22;5(3):eaav1083. doi: 10.1126/sciadv.aav1083. eCollection 2019 Mar.

2.

Maturation of adenovirus primes the protein nano-shell for successful endosomal escape.

Denning D, Bennett S, Mullen T, Moyer C, Vorselen D, Wuite GJL, Nemerow G, Roos WH.

Nanoscale. 2019 Mar 7;11(9):4015-4024. doi: 10.1039/c8nr10182e. Epub 2019 Feb 15.

PMID:
30768112
3.

The fluid membrane determines mechanics of erythrocyte extracellular vesicles and is softened in hereditary spherocytosis.

Vorselen D, van Dommelen SM, Sorkin R, Piontek MC, Schiller J, Döpp ST, Kooijmans SAA, van Oirschot BA, Versluijs BA, Bierings MB, van Wijk R, Schiffelers RM, Wuite GJL, Roos WH.

Nat Commun. 2018 Nov 23;9(1):4960. doi: 10.1038/s41467-018-07445-x.

4.

Effect of dsDNA on the Assembly Pathway and Mechanical Strength of SV40 VP1 Virus-like Particles.

van Rosmalen MGM, Li C, Zlotnick A, Wuite GJL, Roos WH.

Biophys J. 2018 Nov 6;115(9):1656-1665. doi: 10.1016/j.bpj.2018.07.044. Epub 2018 Sep 13.

PMID:
30301514
5.

Single-Cell Acoustic Force Spectroscopy: Resolving Kinetics and Strength of T Cell Adhesion to Fibronectin.

Kamsma D, Bochet P, Oswald F, Alblas N, Goyard S, Wuite GJL, Peterman EJG, Rose T.

Cell Rep. 2018 Sep 11;24(11):3008-3016. doi: 10.1016/j.celrep.2018.08.034.

6.

Reconstitution of anaphase DNA bridge recognition and disjunction.

Sarlós K, Biebricher AS, Bizard AH, Bakx JAM, Ferreté-Bonastre AG, Modesti M, Paramasivam M, Yao Q, Peterman EJG, Wuite GJL, Hickson ID.

Nat Struct Mol Biol. 2018 Sep;25(9):868-876. doi: 10.1038/s41594-018-0123-8. Epub 2018 Sep 3.

PMID:
30177760
7.

Nanomechanics of Extracellular Vesicles Reveals Vesiculation Pathways.

Sorkin R, Huisjes R, Bošković F, Vorselen D, Pignatelli S, Ofir-Birin Y, Freitas Leal JK, Schiller J, Mullick D, Roos WH, Bosman G, Regev-Rudzki N, Schiffelers RM, Wuite GJL.

Small. 2018 Sep;14(39):e1801650. doi: 10.1002/smll.201801650. Epub 2018 Aug 30.

PMID:
30160371
8.

Unraveling the Biophysical Properties of Chromatin Proteins and DNA Using Acoustic Force Spectroscopy.

Lin SN, Qin L, Wuite GJL, Dame RT.

Methods Mol Biol. 2018;1837:301-316. doi: 10.1007/978-1-4939-8675-0_16.

PMID:
30109617
9.

Viscoelastic properties of vimentin originate from nonequilibrium conformational changes.

Block J, Witt H, Candelli A, Danes JC, Peterman EJG, Wuite GJL, Janshoff A, Köster S.

Sci Adv. 2018 Jun 13;4(6):eaat1161. doi: 10.1126/sciadv.aat1161. eCollection 2018 Jun.

10.

Probing cellular mechanics with acoustic force spectroscopy.

Sorkin R, Bergamaschi G, Kamsma D, Brand G, Dekel E, Ofir-Birin Y, Rudik A, Gironella M, Ritort F, Regev-Rudzki N, Roos WH, Wuite GJL.

Mol Biol Cell. 2018 Aug 8;29(16):2005-2011. doi: 10.1091/mbc.E18-03-0154. Epub 2018 Jun 21.

11.

Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms.

King GA, Hashemi Shabestari M, Taris KH, Pandey AK, Venkatesh S, Thilagavathi J, Singh K, Krishna Koppisetti R, Temiakov D, Roos WH, Suzuki CK, Wuite GJL.

Nucleic Acids Res. 2018 Apr 20;46(7):3633-3642. doi: 10.1093/nar/gky204.

12.

A polarized view on DNA under tension.

van Mameren J, Vermeulen K, Wuite GJL, Peterman EJG.

J Chem Phys. 2018 Mar 28;148(12):123306. doi: 10.1063/1.5004019.

PMID:
29604805
13.

Two distinct conformational states define the interaction of human RAD51-ATP with single-stranded DNA.

Brouwer I, Moschetti T, Candelli A, Garcin EB, Modesti M, Pellegrini L, Wuite GJ, Peterman EJ.

EMBO J. 2018 Apr 3;37(7). pii: e98162. doi: 10.15252/embj.201798162. Epub 2018 Mar 5.

14.

Multilamellar nanovesicles show distinct mechanical properties depending on their degree of lamellarity.

Vorselen D, Marchetti M, López-Iglesias C, Peters PJ, Roos WH, Wuite GJL.

Nanoscale. 2018 Mar 15;10(11):5318-5324. doi: 10.1039/c7nr09224e.

PMID:
29504612
15.

Quantifying Local Molecular Tension Using Intercalated DNA Fluorescence.

King GA, Biebricher AS, Heller I, Peterman EJG, Wuite GJL.

Nano Lett. 2018 Apr 11;18(4):2274-2281. doi: 10.1021/acs.nanolett.7b04842. Epub 2018 Mar 9.

16.

Hyperstretching DNA.

Schakenraad K, Biebricher AS, Sebregts M, Ten Bensel B, Peterman EJG, Wuite GJL, Heller I, Storm C, van der Schoot P.

Nat Commun. 2017 Dec 19;8(1):2197. doi: 10.1038/s41467-017-02396-1.

17.

A single point mutation in precursor protein VI doubles the mechanical strength of human adenovirus.

van Rosmalen MGM, Nemerow GR, Wuite GJL, Roos WH.

J Biol Phys. 2018 Jun;44(2):119-132. doi: 10.1007/s10867-017-9479-y. Epub 2017 Dec 15.

18.

Knotty Problems during Mitosis: Mechanistic Insight into the Processing of Ultrafine DNA Bridges in Anaphase.

Sarlós K, Biebricher A, Petermann EJG, Wuite GJL, Hickson ID.

Cold Spring Harb Symp Quant Biol. 2017;82:187-195. doi: 10.1101/sqb.2017.82.033647. Epub 2017 Nov 22.

PMID:
29167280
19.

Probing the mechanical stability of bridged DNA-H-NS protein complexes by single-molecule AFM pulling.

Liang Y, van der Valk RA, Dame RT, Roos WH, Wuite GJL.

Sci Rep. 2017 Nov 10;7(1):15275. doi: 10.1038/s41598-017-15477-4.

20.

Programming the mechanics of cohesive fiber networks by compression.

Vos BE, Liebrand LC, Vahabi M, Biebricher A, Wuite GJL, Peterman EJG, Kurniawan NA, MacKintosh FC, Koenderink GH.

Soft Matter. 2017 Dec 6;13(47):8886-8893. doi: 10.1039/c7sm01393k.

PMID:
29057402
21.

Single-Molecule Measurements Using Acoustic Force Spectroscopy (AFS).

Kamsma D, Wuite GJL.

Methods Mol Biol. 2018;1665:341-351. doi: 10.1007/978-1-4939-7271-5_18.

PMID:
28940078
22.

Introduction to Optical Tweezers: Background, System Designs, and Commercial Solutions.

van Mameren J, Wuite GJL, Heller I.

Methods Mol Biol. 2018;1665:3-23. doi: 10.1007/978-1-4939-7271-5_1.

PMID:
28940061
23.

How to switch the motor on: RNA polymerase initiation steps at the single-molecule level.

Marchetti M, Malinowska A, Heller I, Wuite GJL.

Protein Sci. 2017 Jul;26(7):1303-1313. doi: 10.1002/pro.3183. Epub 2017 May 12. Review.

24.

Vertex-Specific Proteins pUL17 and pUL25 Mechanically Reinforce Herpes Simplex Virus Capsids.

Snijder J, Radtke K, Anderson F, Scholtes L, Corradini E, Baines J, Heck AJR, Wuite GJL, Sodeik B, Roos WH.

J Virol. 2017 May 26;91(12). pii: e00123-17. doi: 10.1128/JVI.00123-17. Print 2017 Jun 15.

25.

Corrigendum: Sliding sleeves of XRCC4-XLF bridge DNA and connect fragments of broken DNA.

Brouwer I, Sitters G, Candelli A, Heerema SJ, Heller I, Melo de AJ, Zhang H, Normanno D, Modesti M, Peterman EJ, Wuite GJ.

Nature. 2017 Mar 30;543(7647):742. doi: 10.1038/nature22028. Epub 2017 Mar 22. No abstract available.

PMID:
28329769
26.

Human RAD52 Captures and Holds DNA Strands, Increases DNA Flexibility, and Prevents Melting of Duplex DNA: Implications for DNA Recombination.

Brouwer I, Zhang H, Candelli A, Normanno D, Peterman EJG, Wuite GJL, Modesti M.

Cell Rep. 2017 Mar 21;18(12):2845-2853. doi: 10.1016/j.celrep.2017.02.068.

27.

Single-molecule observation of DNA compaction by meiotic protein SYCP3.

Syrjänen JL, Heller I, Candelli A, Davies OR, Peterman EJ, Wuite GJ, Pellegrini L.

Elife. 2017 Mar 13;6. pii: e22582. doi: 10.7554/eLife.22582.

28.

Competition between Bending and Internal Pressure Governs the Mechanics of Fluid Nanovesicles.

Vorselen D, MacKintosh FC, Roos WH, Wuite GJ.

ACS Nano. 2017 Mar 28;11(3):2628-2636. doi: 10.1021/acsnano.6b07302. Epub 2017 Mar 14.

29.

Switching between Exonucleolysis and Replication by T7 DNA Polymerase Ensures High Fidelity.

Hoekstra TP, Depken M, Lin SN, Cabanas-Danés J, Gross P, Dame RT, Peterman EJG, Wuite GJL.

Biophys J. 2017 Feb 28;112(4):575-583. doi: 10.1016/j.bpj.2016.12.044.

30.

Nonlinear Loading-Rate-Dependent Force Response of Individual Vimentin Intermediate Filaments to Applied Strain.

Block J, Witt H, Candelli A, Peterman EJ, Wuite GJ, Janshoff A, Köster S.

Phys Rev Lett. 2017 Jan 27;118(4):048101. doi: 10.1103/PhysRevLett.118.048101. Epub 2017 Jan 24.

PMID:
28186786
31.

Recent Advances in Biological Single-Molecule Applications of Optical Tweezers and Fluorescence Microscopy.

Hashemi Shabestari M, Meijering AEC, Roos WH, Wuite GJL, Peterman EJG.

Methods Enzymol. 2017;582:85-119. doi: 10.1016/bs.mie.2016.09.047. Epub 2016 Dec 12.

PMID:
28062046
32.

Probing DNA-DNA Interactions with a Combination of Quadruple-Trap Optical Tweezers and Microfluidics.

Brouwer I, King GA, Heller I, Biebricher AS, Peterman EJG, Wuite GJL.

Methods Mol Biol. 2017;1486:275-293. doi: 10.1007/978-1-4939-6421-5_10.

PMID:
27844432
33.

Versatile Quadruple-Trap Optical Tweezers for Dual DNA Experiments.

Heller I, Laurens N, Vorselen D, Broekmans OD, Biebricher AS, King GA, Brouwer I, Wuite GJL, Peterman EJG.

Methods Mol Biol. 2017;1486:257-272. doi: 10.1007/978-1-4939-6421-5_9.

PMID:
27844431
34.

Controlled tip wear on high roughness surfaces yields gradual broadening and rounding of cantilever tips.

Vorselen D, Kooreman ES, Wuite GJ, Roos WH.

Sci Rep. 2016 Nov 11;6:36972. doi: 10.1038/srep36972.

35.

Fibrin Networks Support Recurring Mechanical Loads by Adapting their Structure across Multiple Scales.

Kurniawan NA, Vos BE, Biebricher A, Wuite GJ, Peterman EJ, Koenderink GH.

Biophys J. 2016 Sep 6;111(5):1026-34. doi: 10.1016/j.bpj.2016.06.034.

36.

Optical Pushing: A Tool for Parallelized Biomolecule Manipulation.

Sitters G, Laurens N, de Rijk E, Kress H, Peterman EJG, Wuite GJL.

Biophys J. 2016 Jul 26;111(2):463. doi: 10.1016/j.bpj.2016.07.007. Epub 2016 Jul 26. No abstract available.

37.

Sliding sleeves of XRCC4-XLF bridge DNA and connect fragments of broken DNA.

Brouwer I, Sitters G, Candelli A, Heerema SJ, Heller I, de Melo AJ, Zhang H, Normanno D, Modesti M, Peterman EJ, Wuite GJ.

Nature. 2016 Jul 28;535(7613):566-9. doi: 10.1038/nature18643. Epub 2016 Jul 20. Erratum in: Nature. 2017 Mar 30;543(7647):742.

PMID:
27437582
38.

Diverse architectural properties of Sso10a proteins: Evidence for a role in chromatin compaction and organization.

Driessen RP, Lin SN, Waterreus WJ, van der Meulen AL, van der Valk RA, Laurens N, Moolenaar GF, Pannu NS, Wuite GJ, Goosen N, Dame RT.

Sci Rep. 2016 Jul 11;6:29422. doi: 10.1038/srep29422.

39.

DNA Twist Stability Changes with Magnesium(2+) Concentration.

Broekmans OD, King GA, Stephens GJ, Wuite GJ.

Phys Rev Lett. 2016 Jun 24;116(25):258102. doi: 10.1103/PhysRevLett.116.258102. Epub 2016 Jun 21.

PMID:
27391755
40.

Assembly and Mechanical Properties of the Cargo-Free and Cargo-Loaded Bacterial Nanocompartment Encapsulin.

Snijder J, Kononova O, Barbu IM, Uetrecht C, Rurup WF, Burnley RJ, Koay MS, Cornelissen JJ, Roos WH, Barsegov V, Wuite GJ, Heck AJ.

Biomacromolecules. 2016 Aug 8;17(8):2522-9. doi: 10.1021/acs.biomac.6b00469. Epub 2016 Jul 7.

PMID:
27355101
41.

Unravelling the structural plasticity of stretched DNA under torsional constraint.

King GA, Peterman EJ, Wuite GJ.

Nat Commun. 2016 Jun 6;7:11810. doi: 10.1038/ncomms11810.

42.

Mechanical Unfolding of an Autotransporter Passenger Protein Reveals the Secretion Starting Point and Processive Transport Intermediates.

Baclayon M, Ulsen Pv, Mouhib H, Shabestari MH, Verzijden T, Abeln S, Roos WH, Wuite GJ.

ACS Nano. 2016 Jun 28;10(6):5710-9. doi: 10.1021/acsnano.5b07072. Epub 2016 Jun 3.

PMID:
27219538
43.

Protein Nanocontainers from Nonviral Origin: Testing the Mechanics of Artificial and Natural Protein Cages by AFM.

Heinze K, Sasaki E, King NP, Baker D, Hilvert D, Wuite GJ, Roos WH.

J Phys Chem B. 2016 Jul 7;120(26):5945-52. doi: 10.1021/acs.jpcb.6b01464. Epub 2016 May 17.

PMID:
27187612
44.

Tuning the Music: Acoustic Force Spectroscopy (AFS) 2.0.

Kamsma D, Creyghton R, Sitters G, Wuite GJ, Peterman EJ.

Methods. 2016 Aug 1;105:26-33. doi: 10.1016/j.ymeth.2016.05.002. Epub 2016 May 6.

PMID:
27163865
45.

[Sample Preparation and Imaging of Single Adenovirus Particle Using Atomic Force Microscopy in Liquid].

Liang Y, Li Chen, van Rosmalen MG, Wuite GJ, Roos WH.

Bing Du Xue Bao. 2015 Nov;31(6):601-6. Chinese.

PMID:
26951003
46.

Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles.

Kononova O, Snijder J, Kholodov Y, Marx KA, Wuite GJ, Roos WH, Barsegov V.

PLoS Comput Biol. 2016 Jan 28;12(1):e1004729. doi: 10.1371/journal.pcbi.1004729. eCollection 2016 Jan.

47.

Optical Pushing: A Tool for Parallelized Biomolecule Manipulation.

Sitters G, Laurens N, de Rijk EJ, Kress H, Peterman EJ, Wuite GJ.

Biophys J. 2016 Jan 5;110(1):44-50. doi: 10.1016/j.bpj.2015.11.028. Erratum in: Biophys J. 2016 Jul 26;111(2):463.

48.

Direct quantitative detection of Doc2b-induced hemifusion in optically trapped membranes.

Brouwer I, Giniatullina A, Laurens N, van Weering JRT, Bald D, Wuite GJL, Groffen AJ.

Nat Commun. 2015 Sep 23;6:8387. doi: 10.1038/ncomms9387.

49.

The impact of DNA intercalators on DNA and DNA-processing enzymes elucidated through force-dependent binding kinetics.

Biebricher AS, Heller I, Roijmans RF, Hoekstra TP, Peterman EJ, Wuite GJ.

Nat Commun. 2015 Jun 18;6:7304. doi: 10.1038/ncomms8304.

50.

Acoustic force spectroscopy.

Sitters G, Kamsma D, Thalhammer G, Ritsch-Marte M, Peterman EJ, Wuite GJ.

Nat Methods. 2015 Jan;12(1):47-50. doi: 10.1038/nmeth.3183. Epub 2014 Nov 24.

PMID:
25419961

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