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Items: 29

1.

Author Correction: Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.

Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, Eswaran G, Ahonen VH, Serra JA, Asiegbu FO, de Dios Barajas-Lopez J, Blande D, Blokhina O, Blomster T, Broholm S, Brosché M, Cui F, Dardick C, Ehonen SE, Elomaa P, Escamez S, Fagerstedt KV, Fujii H, Gauthier A, Gollan PJ, Halimaa P, Heino PI, Himanen K, Hollender C, Kangasjärvi S, Kauppinen L, Kelleher CT, Kontunen-Soppela S, Koskinen JP, Kovalchuk A, Kärenlampi SO, Kärkönen AK, Lim KJ, Leppälä J, Macpherson L, Mikola J, Mouhu K, Mähönen AP, Niinemets Ü, Oksanen E, Overmyer K, Palva ET, Pazouki L, Pennanen V, Puhakainen T, Poczai P, Possen BJHM, Punkkinen M, Rahikainen MM, Rousi M, Ruonala R, van der Schoot C, Shapiguzov A, Sierla M, Sipilä TP, Sutela S, Teeri TH, Tervahauta AI, Vaattovaara A, Vahala J, Vetchinnikova L, Welling A, Wrzaczek M, Xu E, Paulin LG, Schulman AH, Lascoux M, Albert VA, Auvinen P, Helariutta Y, Kangasjärvi J.

Nat Genet. 2019 Jun 13. doi: 10.1038/s41588-019-0442-7. [Epub ahead of print] No abstract available.

PMID:
31197270
2.

CRK2 enhances salt tolerance by regulating callose deposition in connection with PLDα1.

Hunter K, Kimura S, Rokka A, Tran HC, Toyota M, Kukkonen JP, Wrzaczek M.

Plant Physiol. 2019 May 22. pii: pp.00560.2019. doi: 10.1104/pp.19.00560. [Epub ahead of print]

3.

Mechanistic insights into the evolution of DUF26-containing proteins in land plants.

Vaattovaara A, Brandt B, Rajaraman S, Safronov O, Veidenberg A, Luklová M, Kangasjärvi J, Löytynoja A, Hothorn M, Salojärvi J, Wrzaczek M.

Commun Biol. 2019 Feb 8;2:56. doi: 10.1038/s42003-019-0306-9. eCollection 2019.

4.

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.

Shapiguzov A, Vainonen JP, Hunter K, Tossavainen H, Tiwari A, Järvi S, Hellman M, Aarabi F, Alseekh S, Wybouw B, Van Der Kelen K, Nikkanen L, Krasensky-Wrzaczek J, Sipari N, Keinänen M, Tyystjärvi E, Rintamäki E, De Rybel B, Salojärvi J, Van Breusegem F, Fernie AR, Brosché M, Permi P, Aro EM, Wrzaczek M, Kangasjärvi J.

Elife. 2019 Feb 15;8. pii: e43284. doi: 10.7554/eLife.43284.

5.

Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis.

Escamez S, Stael S, Vainonen JP, Willems P, Jin H, Kimura S, Van Breusegem F, Gevaert K, Wrzaczek M, Tuominen H.

J Exp Bot. 2019 Apr 12;70(7):2199-2210. doi: 10.1093/jxb/erz021.

6.

High-throughput sequencing data and the impact of plant gene annotation quality.

Vaattovaara A, Leppälä J, Salojärvi J, Wrzaczek M.

J Exp Bot. 2019 Feb 20;70(4):1069-1076. doi: 10.1093/jxb/ery434.

7.

Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL-INDUCED CELL DEATH1.

Wirthmueller L, Asai S, Rallapalli G, Sklenar J, Fabro G, Kim DS, Lintermann R, Jaspers P, Wrzaczek M, Kangasjärvi J, MacLean D, Menke FLH, Banfield MJ, Jones JDG.

New Phytol. 2018 Oct;220(1):232-248. doi: 10.1111/nph.15277.

8.

The IDA-LIKE peptides IDL6 and IDL7 are negative modulators of stress responses in Arabidopsis thaliana.

Vie AK, Najafi J, Winge P, Cattan E, Wrzaczek M, Kangasjärvi J, Miller G, Brembu T, Bones AM.

J Exp Bot. 2017 Jun 15;68(13):3557-3571. doi: 10.1093/jxb/erx168.

9.

Extraction and Curation of Gene Models for Plant Receptor Kinases for Phylogenetic Analysis.

Vaattovaara A, Salojärvi J, Wrzaczek M.

Methods Mol Biol. 2017;1621:79-91. doi: 10.1007/978-1-4939-7063-6_8.

PMID:
28567645
10.

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.

Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, Eswaran G, Ahonen VH, Serra JA, Asiegbu FO, de Dios Barajas-Lopez J, Blande D, Blokhina O, Blomster T, Broholm S, Brosché M, Cui F, Dardick C, Ehonen SE, Elomaa P, Escamez S, Fagerstedt KV, Fujii H, Gauthier A, Gollan PJ, Halimaa P, Heino PI, Himanen K, Hollender C, Kangasjärvi S, Kauppinen L, Kelleher CT, Kontunen-Soppela S, Koskinen JP, Kovalchuk A, Kärenlampi SO, Kärkönen AK, Lim KJ, Leppälä J, Macpherson L, Mikola J, Mouhu K, Mähönen AP, Niinemets Ü, Oksanen E, Overmyer K, Palva ET, Pazouki L, Pennanen V, Puhakainen T, Poczai P, Possen BJHM, Punkkinen M, Rahikainen MM, Rousi M, Ruonala R, van der Schoot C, Shapiguzov A, Sierla M, Sipilä TP, Sutela S, Teeri TH, Tervahauta AI, Vaattovaara A, Vahala J, Vetchinnikova L, Welling A, Wrzaczek M, Xu E, Paulin LG, Schulman AH, Lascoux M, Albert VA, Auvinen P, Helariutta Y, Kangasjärvi J.

Nat Genet. 2017 Jun;49(6):904-912. doi: 10.1038/ng.3862. Epub 2017 May 8. Erratum in: Nat Genet. 2019 Jun 13;:.

PMID:
28481341
11.

Bound by Fate: The Role of Reactive Oxygen Species in Receptor-Like Kinase Signaling.

Kimura S, Waszczak C, Hunter K, Wrzaczek M.

Plant Cell. 2017 Apr;29(4):638-654. doi: 10.1105/tpc.16.00947. Epub 2017 Apr 3. Review.

12.

MultiSite Gateway-Compatible Cell Type-Specific Gene-Inducible System for Plants.

Siligato R, Wang X, Yadav SR, Lehesranta S, Ma G, Ursache R, Sevilem I, Zhang J, Gorte M, Prasad K, Wrzaczek M, Heidstra R, Murphy A, Scheres B, Mähönen AP.

Plant Physiol. 2016 Feb;170(2):627-41. doi: 10.1104/pp.15.01246. Epub 2015 Dec 7.

13.

Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress.

Bourdais G, Burdiak P, Gauthier A, Nitsch L, Salojärvi J, Rayapuram C, Idänheimo N, Hunter K, Kimura S, Merilo E, Vaattovaara A, Oracz K, Kaufholdt D, Pallon A, Anggoro DT, Glów D, Lowe J, Zhou J, Mohammadi O, Puukko T, Albert A, Lang H, Ernst D, Kollist H, Brosché M, Durner J, Borst JW, Collinge DB, Karpiński S, Lyngkjær MF, Robatzek S, Wrzaczek M, Kangasjärvi J; CRK Consortium.

PLoS Genet. 2015 Jul 21;11(7):e1005373. doi: 10.1371/journal.pgen.1005373. eCollection 2015 Jul.

14.

Integration of photosynthesis, development and stress as an opportunity for plant biology.

Allahverdiyeva Y, Battchikova N, Brosché M, Fujii H, Kangasjärvi S, Mulo P, Mähönen AP, Nieminen K, Overmyer K, Salojärvi J, Wrzaczek M.

New Phytol. 2015 Nov;208(3):647-55. doi: 10.1111/nph.13549. Epub 2015 Jul 14.

15.

GRIM REAPER peptide binds to receptor kinase PRK5 to trigger cell death in Arabidopsis.

Wrzaczek M, Vainonen JP, Stael S, Tsiatsiani L, Help-Rinta-Rahko H, Gauthier A, Kaufholdt D, Bollhöner B, Lamminmäki A, Staes A, Gevaert K, Tuominen H, Van Breusegem F, Helariutta Y, Kangasjärvi J.

EMBO J. 2015 Jan 2;34(1):55-66. doi: 10.15252/embj.201488582. Epub 2014 Nov 14.

16.

The Arabidopsis thaliana cysteine-rich receptor-like kinases CRK6 and CRK7 protect against apoplastic oxidative stress.

Idänheimo N, Gauthier A, Salojärvi J, Siligato R, Brosché M, Kollist H, Mähönen AP, Kangasjärvi J, Wrzaczek M.

Biochem Biophys Res Commun. 2014 Mar 7;445(2):457-62. doi: 10.1016/j.bbrc.2014.02.013. Epub 2014 Feb 12.

PMID:
24530916
17.

Specificity in ROS signaling and transcript signatures.

Vaahtera L, Brosché M, Wrzaczek M, Kangasjärvi J.

Antioxid Redox Signal. 2014 Sep 20;21(9):1422-41. doi: 10.1089/ars.2013.5662. Epub 2014 Feb 6.

18.

ROS signaling loops - production, perception, regulation.

Wrzaczek M, Brosché M, Kangasjärvi J.

Curr Opin Plant Biol. 2013 Oct;16(5):575-82. doi: 10.1016/j.pbi.2013.07.002. Epub 2013 Jul 20. Review.

PMID:
23876676
19.

ROS-talk - how the apoplast, the chloroplast, and the nucleus get the message through.

Shapiguzov A, Vainonen JP, Wrzaczek M, Kangasjärvi J.

Front Plant Sci. 2012 Dec 27;3:292. doi: 10.3389/fpls.2012.00292. eCollection 2012.

20.

RCD1-DREB2A interaction in leaf senescence and stress responses in Arabidopsis thaliana.

Vainonen JP, Jaspers P, Wrzaczek M, Lamminmäki A, Reddy RA, Vaahtera L, Brosché M, Kangasjärvi J.

Biochem J. 2012 Mar 15;442(3):573-81. doi: 10.1042/BJ20111739.

PMID:
22150398
21.

Regulatory subunit B'gamma of protein phosphatase 2A prevents unnecessary defense reactions under low light in Arabidopsis.

Trotta A, Wrzaczek M, Scharte J, Tikkanen M, Konert G, Rahikainen M, Holmström M, Hiltunen HM, Rips S, Sipari N, Mulo P, Weis E, von Schaewen A, Aro EM, Kangasjärvi S.

Plant Physiol. 2011 Jul;156(3):1464-80. doi: 10.1104/pp.111.178442. Epub 2011 May 12.

22.

Transcriptional regulation of the CRK/DUF26 group of receptor-like protein kinases by ozone and plant hormones in Arabidopsis.

Wrzaczek M, Brosché M, Salojärvi J, Kangasjärvi S, Idänheimo N, Mersmann S, Robatzek S, Karpiński S, Karpińska B, Kangasjärvi J.

BMC Plant Biol. 2010 May 25;10:95. doi: 10.1186/1471-2229-10-95.

23.

The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.

Jaspers P, Overmyer K, Wrzaczek M, Vainonen JP, Blomster T, Salojärvi J, Reddy RA, Kangasjärvi J.

BMC Genomics. 2010 Mar 12;11:170. doi: 10.1186/1471-2164-11-170.

24.

Plant ROS and RNS: making plant science more radical than ever.

Wrzaczek M, Overmyer K, Kangasjärvi J.

Physiol Plant. 2010 Apr;138(4):357-9. doi: 10.1111/j.1399-3054.2010.01359.x. Epub 2010 Jan 25. No abstract available.

PMID:
20113433
25.

Scorched earth strategy: Grim Reaper saves the plant.

Wrzaczek M, Brosché M, Kangasjärvi J.

Plant Signal Behav. 2009 Jul;4(7):631-3. doi: 10.1073/pnas.0808980106. Epub 2009 Jul 7.

26.

Arabidopsis GRI is involved in the regulation of cell death induced by extracellular ROS.

Wrzaczek M, Brosché M, Kollist H, Kangasjärvi J.

Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5412-7. doi: 10.1073/pnas.0808980106. Epub 2009 Mar 11.

27.

A Proteasome-regulated glycogen synthase kinase-3 modulates disease response in plants.

Wrzaczek M, Rozhon W, Jonak C.

J Biol Chem. 2007 Feb 23;282(8):5249-55. Epub 2006 Dec 19.

28.

Quantification of free and total salicylic acid in plants by solid-phase extraction and isocratic high-performance anion-exchange chromatography.

Rozhon W, Petutschnig E, Wrzaczek M, Jonak C.

Anal Bioanal Chem. 2005 Aug;382(7):1620-7. Epub 2005 Jul 5.

PMID:
15997378
29.

Plant MAP kinase pathways: how many and what for?

Wrzaczek M, Hirt H.

Biol Cell. 2001 Sep;93(1-2):81-7.

PMID:
11730326

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