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Ancestral and neo-sex chromosomes contribute to population divergence in a dioecious plant.

Beaudry FEG, Barrett SCH, Wright SI.

Evolution. 2019 Dec 6. doi: 10.1111/evo.13892. [Epub ahead of print]


The ecology, evolution, and genetics of plant reproductive systems.

Schoen DJ, Johnson MTJ, Wright SI.

New Phytol. 2019 Nov;224(3):999-1004. doi: 10.1111/nph.16222. No abstract available.


Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus.

Kreiner JM, Giacomini DA, Bemm F, Waithaka B, Regalado J, Lanz C, Hildebrandt J, Sikkema PH, Tranel PJ, Weigel D, Stinchcombe JR, Wright SI.

Proc Natl Acad Sci U S A. 2019 Oct 15;116(42):21076-21084. doi: 10.1073/pnas.1900870116. Epub 2019 Sep 30. Erratum in: Proc Natl Acad Sci U S A. 2019 Nov 12;116(46):23363.


Hybridization and a loss of sex shape genome-wide diversity and the origin of species in the evening primroses (Oenothera, Onagraceae).

Hollister JD, Greiner S, Johnson MTJ, Wright SI.

New Phytol. 2019 Nov;224(3):1372-1380. doi: 10.1111/nph.16053. Epub 2019 Aug 5.


Population genomics of the facultatively asexual duckweed Spirodela polyrhiza.

Ho EKH, Bartkowska M, Wright SI, Agrawal AF.

New Phytol. 2019 Nov;224(3):1361-1371. doi: 10.1111/nph.16056. Epub 2019 Aug 7.


Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris).

Kryvokhyzha D, Milesi P, Duan T, Orsucci M, Wright SI, Glémin S, Lascoux M.

PLoS Genet. 2019 May 13;15(5):e1008131. doi: 10.1371/journal.pgen.1008131. eCollection 2019 May.


Transposable Elements Are Important Contributors to Standing Variation in Gene Expression in Capsella Grandiflora.

Uzunović J, Josephs EB, Stinchcombe JR, Wright SI.

Mol Biol Evol. 2019 Aug 1;36(8):1734-1745. doi: 10.1093/molbev/msz098.


Reflector Selection for the Indexing of Electron Backscatter Diffraction Patterns.

Wright SI, Singh S, De Graef M.

Microsc Microanal. 2019 Jun;25(3):675-681. doi: 10.1017/S1431927619000333. Epub 2019 Mar 27.


NLPAR: Non-local smoothing for enhanced EBSD pattern indexing.

Brewick PT, Wright SI, Rowenhorst DJ.

Ultramicroscopy. 2019 May;200:50-61. doi: 10.1016/j.ultramic.2019.02.013. Epub 2019 Feb 19.


Long-term balancing selection drives evolution of immunity genes in Capsella.

Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Neuffer B, Wright SI, Weigel D.

Elife. 2019 Feb 26;8. pii: e43606. doi: 10.7554/eLife.43606.


Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae).

Kryvokhyzha D, Salcedo A, Eriksson MC, Duan T, Tawari N, Chen J, Guerrina M, Kreiner JM, Kent TV, Lagercrantz U, Stinchcombe JR, Glémin S, Wright SI, Lascoux M.

PLoS Genet. 2019 Feb 15;15(2):e1007949. doi: 10.1371/journal.pgen.1007949. eCollection 2019 Feb.


The effects of haploid selection on Y chromosome evolution in two closely related dioecious plants.

Sandler G, Beaudry FEG, Barrett SCH, Wright SI.

Evol Lett. 2018 Jun 22;2(4):368-377. doi: 10.1002/evl3.60. eCollection 2018 Aug.


Coalescence and Linkage Disequilibrium in Facultatively Sexual Diploids.

Hartfield M, Wright SI, Agrawal AF.

Genetics. 2018 Oct;210(2):683-701. doi: 10.1534/genetics.118.301244. Epub 2018 Aug 10.


Homeologue-specific expression divergence in the recently formed tetraploid Capsella bursa-pastoris (Brassicaceae).

Huang HR, Liu JJ, Xu Y, Lascoux M, Ge XJ, Wright SI.

New Phytol. 2018 Oct;220(2):624-635. doi: 10.1111/nph.15299. Epub 2018 Jul 20.


A less selfish view of genome size evolution in maize.

Kreiner JM, Wright SI.

PLoS Genet. 2018 May 10;14(5):e1007249. doi: 10.1371/journal.pgen.1007249. eCollection 2018 May. No abstract available.


Genomic Loss and Silencing on the Y Chromosomes of Rumex.

Beaudry FEG, Barrett SCH, Wright SI.

Genome Biol Evol. 2017 Dec 1;9(12):3345-3355. doi: 10.1093/gbe/evx254.


Improved twin detection via tracking of individual Kikuchi band intensity of EBSD patterns.

Rampton TM, Wright SI, Miles MP, Homer ER, Wagoner RH, Fullwood DT.

Ultramicroscopy. 2018 Feb;185:5-14. doi: 10.1016/j.ultramic.2017.11.003. Epub 2017 Nov 10.


Population Genomics of Herbicide Resistance: Adaptation via Evolutionary Rescue.

Kreiner JM, Stinchcombe JR, Wright SI.

Annu Rev Plant Biol. 2018 Apr 29;69:611-635. doi: 10.1146/annurev-arplant-042817-040038. Epub 2017 Nov 15. Review.


Coevolution between transposable elements and recombination.

Kent TV, Uzunović J, Wright SI.

Philos Trans R Soc Lond B Biol Sci. 2017 Dec 19;372(1736). pii: 20160458. doi: 10.1098/rstb.2016.0458. Review.


Hill-Robertson Interference Reduces Genetic Diversity on a Young Plant Y-Chromosome.

Hough J, Wang W, Barrett SCH, Wright SI.

Genetics. 2017 Oct;207(2):685-695. doi: 10.1534/genetics.117.300142. Epub 2017 Aug 15.


The relationship between selection, network connectivity, and regulatory variation within a population of Capsella grandiora.

Josephs EB, Wright SI, Stinchcombe JR, Schoen DJ.

Genome Biol Evol. 2017 Apr 8. doi: 10.1093/gbe/evx068. [Epub ahead of print]


Influence of Noise-Generating Factors on Cross-Correlation Electron Backscatter Diffraction (EBSD) Measurement of Geometrically Necessary Dislocations (GNDs).

Hansen LT, Jackson BE, Fullwood DT, Wright SI, De Graef M, Homer ER, Wagoner RH.

Microsc Microanal. 2017 Jun;23(3):460-471. doi: 10.1017/S1431927617000204. Epub 2017 Mar 6.


What can genome-wide association studies tell us about the evolutionary forces maintaining genetic variation for quantitative traits?

Josephs EB, Stinchcombe JR, Wright SI.

New Phytol. 2017 Apr;214(1):21-33. doi: 10.1111/nph.14410. Epub 2017 Feb 17. Review.


Purifying and Positive Selection Influence Patterns of Gene Loss and Gene Expression in the Evolution of a Plant Sex Chromosome System.

Crowson D, Barrett SCH, Wright SI.

Mol Biol Evol. 2017 May 1;34(5):1140-1154. doi: 10.1093/molbev/msx064.


Charlesworth et al. on Background Selection and Neutral Diversity.

Wright SI.

Genetics. 2016 Nov;204(3):829-832. doi: 10.1534/genetics.116.196170. No abstract available.


Mutation Accumulation in an Asexual Relative of Arabidopsis.

Lovell JT, Williamson RJ, Wright SI, McKay JK, Sharbel TF.

PLoS Genet. 2017 Jan 9;13(1):e1006550. doi: 10.1371/journal.pgen.1006550. eCollection 2017 Jan.


Repeated Inactivation of the First Committed Enzyme Underlies the Loss of Benzaldehyde Emission after the Selfing Transition in Capsella.

Sas C, Müller F, Kappel C, Kent TV, Wright SI, Hilker M, Lenhard M.

Curr Biol. 2016 Dec 19;26(24):3313-3319. doi: 10.1016/j.cub.2016.10.026. Epub 2016 Dec 1.


The genetic architecture of tristyly and its breakdown to self-fertilization.

Arunkumar R, Wang W, Wright SI, Barrett SC.

Mol Ecol. 2017 Feb;26(3):752-765. doi: 10.1111/mec.13946. Epub 2016 Dec 26.


Standing genetic variation in a tissue-specific enhancer underlies selfing-syndrome evolution in Capsella.

Sicard A, Kappel C, Lee YW, Woźniak NJ, Marona C, Stinchcombe JR, Wright SI, Lenhard M.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13911-13916. Epub 2016 Nov 14.


On the Trail of Linked Selection.

Josephs EB, Wright SI.

PLoS Genet. 2016 Aug 18;12(8):e1006240. doi: 10.1371/journal.pgen.1006240. eCollection 2016 Aug. No abstract available.


Transposable element evolution in the allotetraploid Capsella bursa-pastoris.

Ågren JA, Huang HR, Wright SI.

Am J Bot. 2016 Jul;103(7):1197-202. doi: 10.3732/ajb.1600103. Epub 2016 Jul 20.


The problem of estimating recent genetic connectivity in a changing world.

Samarasin P, Shuter BJ, Wright SI, Rodd FH.

Conserv Biol. 2017 Feb;31(1):126-135. doi: 10.1111/cobi.12765. Epub 2016 Oct 5.


Spontaneous Chloroplast Mutants Mostly Occur by Replication Slippage and Show a Biased Pattern in the Plastome of Oenothera.

Massouh A, Schubert J, Yaneva-Roder L, Ulbricht-Jones ES, Zupok A, Johnson MT, Wright SI, Pellizzer T, Sobanski J, Bock R, Greiner S.

Plant Cell. 2016 Apr;28(4):911-29. doi: 10.1105/tpc.15.00879. Epub 2016 Apr 6.


Recent mating-system evolution in Eichhornia is accompanied by cis-regulatory divergence.

Arunkumar R, Maddison TI, Barrett SC, Wright SI.

New Phytol. 2016 Jul;211(2):697-707. doi: 10.1111/nph.13918. Epub 2016 Mar 15.


The Limits of Natural Selection in a Nonequilibrium World.

Brandvain Y, Wright SI.

Trends Genet. 2016 Apr;32(4):201-210. doi: 10.1016/j.tig.2016.01.004. Epub 2016 Feb 11. Review.


The influence of population structure on gene expression and flowering time variation in the ubiquitous weed Capsella bursa-pastoris (Brassicaceae).

Kryvokhyzha D, Holm K, Chen J, Cornille A, Glémin S, Wright SI, Lagercrantz U, Lascoux M.

Mol Ecol. 2016 Mar;25(5):1106-21. doi: 10.1111/mec.13537. Epub 2016 Feb 16.


Genomic signature of successful colonization of Eurasia by the allopolyploid shepherd's purse (Capsella bursa-pastoris).

Cornille A, Salcedo A, Kryvokhyzha D, Glémin S, Holm K, Wright SI, Lascoux M.

Mol Ecol. 2016 Jan;25(2):616-29. doi: 10.1111/mec.13491. Epub 2016 Jan 20.


Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression.

Josephs EB, Lee YW, Stinchcombe JR, Wright SI.

Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):15390-5. doi: 10.1073/pnas.1503027112. Epub 2015 Nov 24.


Coalescent Times and Patterns of Genetic Diversity in Species with Facultative Sex: Effects of Gene Conversion, Population Structure, and Heterogeneity.

Hartfield M, Wright SI, Agrawal AF.

Genetics. 2016 Jan;202(1):297-312. doi: 10.1534/genetics.115.178004. Epub 2015 Nov 19.


Introduction and comparison of new EBSD post-processing methodologies.

Wright SI, Nowell MM, Lindeman SP, Camus PP, De Graef M, Jackson MA.

Ultramicroscopy. 2015 Dec;159 Pt 1:81-94. doi: 10.1016/j.ultramic.2015.08.001. Epub 2015 Aug 17.


Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella.

Sicard A, Kappel C, Josephs EB, Lee YW, Marona C, Stinchcombe JR, Wright SI, Lenhard M.

Nat Commun. 2015 Aug 13;6:7960. doi: 10.1038/ncomms8960.


The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.


Selfish genetic elements and plant genome size evolution.

Ågren JA, Wright SI.

Trends Plant Sci. 2015 Apr;20(4):195-6. doi: 10.1016/j.tplants.2015.03.007. Epub 2015 Mar 20.


Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris.

Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, Williamson RJ, Neuffer B, Lascoux M, Slotte T, Wright SI.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2806-11. doi: 10.1073/pnas.1412277112. Epub 2015 Feb 17.


No evidence that sex and transposable elements drive genome size variation in evening primroses.

Ågren JA, Greiner S, Johnson MT, Wright SI.

Evolution. 2015 Apr;69(4):1053-62. doi: 10.1111/evo.12627. Epub 2015 Mar 30.


The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations.

Arunkumar R, Ness RW, Wright SI, Barrett SC.

Genetics. 2015 Mar;199(3):817-29. doi: 10.1534/genetics.114.172809. Epub 2014 Dec 30.


Recurrent loss of sex is associated with accumulation of deleterious mutations in Oenothera.

Hollister JD, Greiner S, Wang W, Wang J, Zhang Y, Wong GK, Wright SI, Johnson MT.

Mol Biol Evol. 2015 Apr;32(4):896-905. doi: 10.1093/molbev/msu345. Epub 2014 Dec 21.


Electron imaging with an EBSD detector.

Wright SI, Nowell MM, de Kloe R, Camus P, Rampton T.

Ultramicroscopy. 2015 Jan;148:132-145. doi: 10.1016/j.ultramic.2014.10.002. Epub 2014 Oct 23.


Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora.

Williamson RJ, Josephs EB, Platts AE, Hazzouri KM, Haudry A, Blanchette M, Wright SI.

PLoS Genet. 2014 Sep 25;10(9):e1004622. doi: 10.1371/journal.pgen.1004622. eCollection 2014 Sep.


Chromosomal distribution of cytonuclear genes in a dioecious plant with sex chromosomes.

Hough J, Ågren JA, Barrett SC, Wright SI.

Genome Biol Evol. 2014 Sep 4;6(9):2439-43. doi: 10.1093/gbe/evu197.

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