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Items: 1 to 50 of 184

1.

Virtual monoenergetic dual-energy CT for evaluation of hepatic and splenic lacerations.

Sun EX, Wortman JR, Uyeda JW, Lacson R, Sodickson AD.

Emerg Radiol. 2019 Apr 8. doi: 10.1007/s10140-019-01687-y. [Epub ahead of print]

PMID:
30963313
2.

Corrigendum to "Dietary carbohydrate restriction as the first approach in diabetes management: Critical review and evidence base" [Nutrition 31 (2015) 1-13].

Feinman RD, Pogozelski WK, Astrup A, Bernstein RK, Fine EJ, Westman EC, Accurso A, Frassetto L, Gower BA, McFarlane SI, Nielsen JV, Krarup T, Saslow L, Roth KS, Vernon MC, Volek JS, Wilshire GB, Dahlqvist A, Sundberg R, Childers A, Morrison K, Manninen AH, Dashti HM, Wood RJ, Wortman J, Worm N.

Nutrition. 2019 Jun;62:213. doi: 10.1016/j.nut.2018.12.002. Epub 2019 Mar 29. No abstract available.

PMID:
30935711
3.

Beyond appendicitis: ultrasound findings of acute bowel pathology.

Choe J, Wortman JR, Michaels A, Sarma A, Fulwadhva UP, Sodickson AD.

Emerg Radiol. 2019 Jun;26(3):307-317. doi: 10.1007/s10140-019-01670-7. Epub 2019 Jan 19.

PMID:
30661212
4.

Impact Analysis of the Routine Use of Dual-Energy Computed Tomography for Characterization of Incidental Renal Lesions.

Wortman JR, Shyu JY, Fulwadhva UP, Sodickson AD.

J Comput Assist Tomogr. 2019 Mar/Apr;43(2):176-182. doi: 10.1097/RCT.0000000000000828.

PMID:
30475248
5.

Simultaneous record linkage and causal inference with propensity score subclassification.

Wortman JH, Reiter JP.

Stat Med. 2018 Oct 30;37(24):3533-3546. doi: 10.1002/sim.7911. Epub 2018 Aug 1.

PMID:
30069901
6.

Pearls, Pitfalls, and Problems in Dual-Energy Computed Tomography Imaging of the Body.

Wortman JR, Sodickson AD.

Radiol Clin North Am. 2018 Jul;56(4):625-640. doi: 10.1016/j.rcl.2018.03.007. Review.

PMID:
29936951
7.

Dual energy CT for evaluation of polycystic kidneys: a multi reader study of interpretation time and diagnostic confidence.

Glomski SA, Wortman JR, Uyeda JW, Sodickson AD.

Abdom Radiol (NY). 2018 Dec;43(12):3418-3424. doi: 10.1007/s00261-018-1674-1.

PMID:
29926138
8.

Imaging of Acute Conditions of the Perineum.

Choe J, Wortman JR, Sodickson AD, Khurana B, Uyeda JW.

Radiographics. 2018 Jul-Aug;38(4):1111-1130. doi: 10.1148/rg.2018170151. Epub 2018 Jun 15. Review.

PMID:
29906202
9.

Motion Artifact Reduction From High-Pitch Dual-Source Computed Tomography Pulmonary Angiography.

Bunch PM, Fulwadhva UP, Wortman JR, Primak AN, Madan R, Steigner ML, Sodickson AD.

J Comput Assist Tomogr. 2018 Jul/Aug;42(4):623-629. doi: 10.1097/RCT.0000000000000736.

PMID:
29613990
10.

Dual-Energy CT for Abdominal and Pelvic Trauma.

Wortman JR, Uyeda JW, Fulwadhva UP, Sodickson AD.

Radiographics. 2018 Mar-Apr;38(2):586-602. doi: 10.1148/rg.2018170058. Review.

PMID:
29528816
11.

RNA-Seq Profile Reveals Th-1 and Th-17-Type of Immune Responses in Mice Infected Systemically with Aspergillus fumigatus.

Shankar J, Cerqueira GC, Wortman JR, Clemons KV, Stevens DA.

Mycopathologia. 2018 Aug;183(4):645-658. doi: 10.1007/s11046-018-0254-9. Epub 2018 Mar 2.

PMID:
29500637
12.

Computed Tomography Window Blending: Feasibility in Thoracic Trauma.

Mandell JC, Wortman JR, Rocha TC, Folio LR, Andriole KP, Khurana B.

Acad Radiol. 2018 Sep;25(9):1190-1200. doi: 10.1016/j.acra.2017.12.029. Epub 2018 Feb 7.

PMID:
29428212
13.

Multimodality Imaging, including Dual-Energy CT, in the Evaluation of Gallbladder Disease.

Ratanaprasatporn L, Uyeda JW, Wortman JR, Richardson I, Sodickson AD.

Radiographics. 2018 Jan-Feb;38(1):75-89. doi: 10.1148/rg.2018170076. Review.

PMID:
29320323
14.

First-trimester emergencies: a radiologist's perspective.

Phillips CH, Wortman JR, Ginsburg ES, Sodickson AD, Doubilet PM, Khurana B.

Emerg Radiol. 2018 Feb;25(1):61-72. doi: 10.1007/s10140-017-1556-9. Epub 2017 Sep 25. Review.

PMID:
28948411
15.

Dual energy CT applications in pancreatic pathologies.

George E, Wortman JR, Fulwadhva UP, Uyeda JW, Sodickson AD.

Br J Radiol. 2017 Dec;90(1080):20170411. doi: 10.1259/bjr.20170411. Epub 2017 Sep 22. Review.

16.

Revitalization of a Forward Genetic Screen Identifies Three New Regulators of Fungal Secondary Metabolism in the Genus Aspergillus.

Pfannenstiel BT, Zhao X, Wortman J, Wiemann P, Throckmorton K, Spraker JE, Soukup AA, Luo X, Lindner DL, Lim FY, Knox BP, Haas B, Fischer GJ, Choera T, Butchko RAE, Bok JW, Affeldt KJ, Keller NP, Palmer JM.

MBio. 2017 Sep 5;8(5). pii: e01246-17. doi: 10.1128/mBio.01246-17.

17.

Expanding signaling-molecule wavefront model of cell polarization in the Drosophila wing primordium.

Wortman JC, Nahmad M, Zhang PC, Lander AD, Yu CC.

PLoS Comput Biol. 2017 Jul 3;13(7):e1005610. doi: 10.1371/journal.pcbi.1005610. eCollection 2017 Jul.

18.

Atomistic Simulation Derived Insight on the Irreversible Structural Changes of Si Electrode during Fast and Slow Delithiation.

Kim KJ, Wortman J, Kim SY, Qi Y.

Nano Lett. 2017 Jul 12;17(7):4330-4338. doi: 10.1021/acs.nanolett.7b01389. Epub 2017 Jun 23.

PMID:
28632390
19.

CT angiography for acute gastrointestinal bleeding: what the radiologist needs to know.

Wortman JR, Landman W, Fulwadhva UP, Viscomi SG, Sodickson AD.

Br J Radiol. 2017 Jul;90(1075):20170076. doi: 10.1259/bjr.20170076. Epub 2017 Apr 26. Review.

20.

Corrigendum: Mobile genes in the human microbiome are structured from global to individual scales.

Brito IL, Yilmaz S, Huang K, Xu L, Jupiter SD, Jenkins AP, Naisilisili W, Tamminen M, Smillie CS, Wortman JR, Birren BW, Xavier RJ, Blainey PC, Singh AK, Gevers D, Alm EJ.

Nature. 2017 Apr 6;544(7648):124. doi: 10.1038/nature20774. Epub 2017 Mar 22. No abstract available.

PMID:
28329759
21.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV.

Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0.

22.

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks.

Cerqueira GC, Earl AM, Ernst CM, Grad YH, Dekker JP, Feldgarden M, Chapman SB, Reis-Cunha JL, Shea TP, Young S, Zeng Q, Delaney ML, Kim D, Peterson EM, O'Brien TF, Ferraro MJ, Hooper DC, Huang SS, Kirby JE, Onderdonk AB, Birren BW, Hung DT, Cosimi LA, Wortman JR, Murphy CI, Hanage WP.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1135-1140. doi: 10.1073/pnas.1616248114. Epub 2017 Jan 17.

23.

Axonal Transport: A Constrained System.

Yu CC, Reddy BJN, Wortman JC, Gross SP.

J Neurol Neuromedicine. 2017;2(3):20-24. doi: 10.29245/2572.942X/2017/3.1118. Epub 2017 Mar 21.

24.

The effect of mood on judgments of subjective well-being: Nine tests of the judgment model.

Yap SCY, Wortman J, Anusic I, Baker SG, Scherer LD, Donnellan MB, Lucas RE.

J Pers Soc Psychol. 2017 Dec;113(6):939-961. doi: 10.1037/pspp0000115. Epub 2016 Dec 12.

25.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.

Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, Young SK, Hegarty R, Daza R, Gujja S, Wortman JR, Birren BW, Nusbaum C, Thomas J, Carey CM, Pritham EJ, Feschotte C, Noto T, Mochizuki K, Papazyan R, Taverna SD, Dear PH, Cassidy-Hanley DM, Xiong J, Miao W, Orias E, Coyne RS.

Elife. 2016 Nov 28;5. pii: e19090. doi: 10.7554/eLife.19090.

26.

A successful lifestyle intervention model replicated in diverse clinical settings.

Mark S, Du Toit S, Noakes TD, Nordli K, Coetzee D, Makin M, Van der Spuy S, Frey J, Wortman J.

S Afr Med J. 2016 Jul 3;106(8):763-6. doi: 10.7196/SAMJ.2016.v106i8.10136.

PMID:
27499396
27.

Mobile genes in the human microbiome are structured from global to individual scales.

Brito IL, Yilmaz S, Huang K, Xu L, Jupiter SD, Jenkins AP, Naisilisili W, Tamminen M, Smillie CS, Wortman JR, Birren BW, Xavier RJ, Blainey PC, Singh AK, Gevers D, Alm EJ.

Nature. 2016 Jul 21;535(7612):435-439. doi: 10.1038/nature18927. Epub 2016 Jul 13. Erratum in: Nature. 2017 Apr 6;544(7648):124.

28.

Traumatic Finger Injuries: What the Orthopedic Surgeon Wants to Know.

Wieschhoff GG, Sheehan SE, Wortman JR, Dyer GS, Sodickson AD, Patel KI, Khurana B.

Radiographics. 2016 Jul-Aug;36(4):1106-28. doi: 10.1148/rg.2016150216. Review.

PMID:
27399238
29.

Dual-Energy CT of Incidental Findings in the Abdomen: Can We Reduce the Need for Follow-Up Imaging?

Wortman JR, Bunch PM, Fulwadhva UP, Bonci GA, Sodickson AD.

AJR Am J Roentgenol. 2016 Oct;207(4):W58-W68. doi: 10.2214/AJR.16.16087. Epub 2016 Jul 6.

PMID:
27384936
30.

Primary Extremity Liposarcoma: MRI Features, Histopathology, and Clinical Outcomes.

Wortman JR, Tirumani SH, Jagannathan JP, Tirumani H, Shinagare AB, Hornick JL, Ramaiya NH.

J Comput Assist Tomogr. 2016 Sep-Oct;40(5):791-8. doi: 10.1097/RCT.0000000000000431.

PMID:
27224232
31.

Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance.

Desjardins CA, Cohen KA, Munsamy V, Abeel T, Maharaj K, Walker BJ, Shea TP, Almeida DV, Manson AL, Salazar A, Padayatchi N, O'Donnell MR, Mlisana KP, Wortman J, Birren BW, Grosset J, Earl AM, Pym AS.

Nat Genet. 2016 May;48(5):544-51. doi: 10.1038/ng.3548. Epub 2016 Apr 11.

32.

Radiation Therapy for Soft-Tissue Sarcomas: A Primer for Radiologists.

Wortman JR, Tirumani SH, Jagannathan JP, Rosenthal MH, Shinagare AB, Hornick JL, Baldini EH, Ramaiya NH.

Radiographics. 2016 Mar-Apr;36(2):554-72. doi: 10.1148/rg.2016150083. Review.

PMID:
26963462
33.

Use of Dual-Energy CT and Iodine Maps in Evaluation of Bowel Disease.

Fulwadhva UP, Wortman JR, Sodickson AD.

Radiographics. 2016 Mar-Apr;36(2):393-406. doi: 10.1148/rg.2016150151. Review.

PMID:
26963452
34.

Genomic insights into the Ixodes scapularis tick vector of Lyme disease.

Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, Thiagarajan M, Joardar VS, Hannick LI, Bidwell S, Hammond MP, Young S, Zeng Q, Abrudan JL, Almeida FC, Ayllón N, Bhide K, Bissinger BW, Bonzon-Kulichenko E, Buckingham SD, Caffrey DR, Caimano MJ, Croset V, Driscoll T, Gilbert D, Gillespie JJ, Giraldo-Calderón GI, Grabowski JM, Jiang D, Khalil SMS, Kim D, Kocan KM, Koči J, Kuhn RJ, Kurtti TJ, Lees K, Lang EG, Kennedy RC, Kwon H, Perera R, Qi Y, Radolf JD, Sakamoto JM, Sánchez-Gracia A, Severo MS, Silverman N, Šimo L, Tojo M, Tornador C, Van Zee JP, Vázquez J, Vieira FG, Villar M, Wespiser AR, Yang Y, Zhu J, Arensburger P, Pietrantonio PV, Barker SC, Shao R, Zdobnov EM, Hauser F, Grimmelikhuijzen CJP, Park Y, Rozas J, Benton R, Pedra JHF, Nelson DR, Unger MF, Tubio JMC, Tu Z, Robertson HM, Shumway M, Sutton G, Wortman JR, Lawson D, Wikel SK, Nene VM, Fraser CM, Collins FH, Birren B, Nelson KE, Caler E, Hill CA.

Nat Commun. 2016 Feb 9;7:10507. doi: 10.1038/ncomms10507.

35.

Synergistic Radiation Dose Reduction by Combining Automatic Tube Voltage Selection and Iterative Reconstruction.

Wortman JR, Adduci AJ, Sodickson AD.

J Thorac Imaging. 2016 Mar;31(2):111-8. doi: 10.1097/RTI.0000000000000196.

PMID:
26783699
36.

Social Media and Scientific Meetings: Education Exhibit "Likes" at the Radiological Society of North America Annual Meeting.

Bunch PM, Wortman JR, Andriole KP.

Acad Radiol. 2016 Mar;23(3):382-8. doi: 10.1016/j.acra.2015.10.016. Epub 2015 Dec 4.

PMID:
26657903
37.

Spousal similarity in life satisfaction before and after divorce.

Wortman J, Lucas RE.

J Pers Soc Psychol. 2016 Apr;110(4):625-33. doi: 10.1037/pspp0000065. Epub 2015 Oct 5.

38.

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.

Cohen KA, Abeel T, Manson McGuire A, Desjardins CA, Munsamy V, Shea TP, Walker BJ, Bantubani N, Almeida DV, Alvarado L, Chapman SB, Mvelase NR, Duffy EY, Fitzgerald MG, Govender P, Gujja S, Hamilton S, Howarth C, Larimer JD, Maharaj K, Pearson MD, Priest ME, Zeng Q, Padayatchi N, Grosset J, Young SK, Wortman J, Mlisana KP, O'Donnell MR, Birren BW, Bishai WR, Pym AS, Earl AM.

PLoS Med. 2015 Sep 29;12(9):e1001880. doi: 10.1371/journal.pmed.1001880. eCollection 2015 Sep.

39.

Toward a standard in structural genome annotation for prokaryotes.

Tripp HJ, Sutton G, White O, Wortman J, Pati A, Mikhailova N, Ovchinnikova G, Payne SH, Kyrpides NC, Ivanova N.

Stand Genomic Sci. 2015 Jul 25;10:45. doi: 10.1186/s40793-015-0034-9. eCollection 2015.

40.

Neoadjuvant radiation in primary extremity liposarcoma: correlation of MRI features with histopathology.

Wortman JR, Tirumani SH, Tirumani H, Shinagare AB, Jagannathan JP, Hornick JL, Ramaiya NH.

Eur Radiol. 2016 May;26(5):1226-34. doi: 10.1007/s00330-015-3953-3. Epub 2015 Aug 28.

PMID:
26314480
41.

Illumina identification of RsrA, a conserved C2H2 transcription factor coordinating the NapA mediated oxidative stress signaling pathway in Aspergillus.

Bok JW, Wiemann P, Garvey GS, Lim FY, Haas B, Wortman J, Keller NP.

BMC Genomics. 2014 Nov 22;15:1011. doi: 10.1186/1471-2164-15-1011.

42.

Structured physician order entry for trauma CT: value in improving clinical information transfer and billing efficiency.

Wortman JR, Goud A, Raja AS, Marchello D, Sodickson A.

AJR Am J Roentgenol. 2014 Dec;203(6):1242-8. doi: 10.2214/AJR.13.12353.

PMID:
25415701
43.

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, Earl AM.

PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.

44.

The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP.

Genome Biol Evol. 2014 Oct 13;6(10):2866-82. doi: 10.1093/gbe/evu225.

45.

Dietary carbohydrate restriction as the first approach in diabetes management: critical review and evidence base.

Feinman RD, Pogozelski WK, Astrup A, Bernstein RK, Fine EJ, Westman EC, Accurso A, Frassetto L, Gower BA, McFarlane SI, Nielsen JV, Krarup T, Saslow L, Roth KS, Vernon MC, Volek JS, Wilshire GB, Dahlqvist A, Sundberg R, Childers A, Morrison K, Manninen AH, Dashti HM, Wood RJ, Wortman J, Worm N.

Nutrition. 2015 Jan;31(1):1-13. doi: 10.1016/j.nut.2014.06.011. Epub 2014 Jul 16. Review. Erratum in: Nutrition. 2019 Jun;62:213.

46.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

47.

Axonal transport: how high microtubule density can compensate for boundary effects in small-caliber axons.

Wortman JC, Shrestha UM, Barry DM, Garcia ML, Gross SP, Yu CC.

Biophys J. 2014 Feb 18;106(4):813-23. doi: 10.1016/j.bpj.2013.12.047.

48.

Identification of 50 class D β-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp.

Périchon B, Goussard S, Walewski V, Krizova L, Cerqueira G, Murphy C, Feldgarden M, Wortman J, Clermont D, Nemec A, Courvalin P.

Antimicrob Agents Chemother. 2014;58(2):936-49. doi: 10.1128/AAC.01261-13. Epub 2013 Nov 25.

49.

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.

Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR.

Nucleic Acids Res. 2014 Jan;42(Database issue):D705-10. doi: 10.1093/nar/gkt1029. Epub 2013 Nov 4.

50.

Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains.

Lebreton F, van Schaik W, McGuire AM, Godfrey P, Griggs A, Mazumdar V, Corander J, Cheng L, Saif S, Young S, Zeng Q, Wortman J, Birren B, Willems RJ, Earl AM, Gilmore MS.

MBio. 2013 Aug 20;4(4). pii: e00534-13. doi: 10.1128/mBio.00534-13.

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