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Influenza Vaccines Delivered in Early Childhood Could Turn Antigenic Sin into Antigenic Blessings.

Worobey M, Plotkin S, Hensley SE.

Cold Spring Harb Perspect Med. 2020 Jan 21. pii: a038471. doi: 10.1101/cshperspect.a038471. [Epub ahead of print]


Childhood immune imprinting to influenza A shapes birth year-specific risk during seasonal H1N1 and H3N2 epidemics.

Gostic KM, Bridge R, Brady S, Viboud C, Worobey M, Lloyd-Smith JO.

PLoS Pathog. 2019 Dec 19;15(12):e1008109. doi: 10.1371/journal.ppat.1008109. eCollection 2019 Dec.


Divergence dating using mixed effects clock modelling: An application to HIV-1.

Bletsa M, Suchard MA, Ji X, Gryseels S, Vrancken B, Baele G, Worobey M, Lemey P.

Virus Evol. 2019 Sep 5;5(2):vez036. doi: 10.1093/ve/vez036. eCollection 2019 Jul.


Purulent bronchitis in 1917 and pandemic influenza in 1918.

Cox J, Gill D, Cox F, Worobey M.

Lancet Infect Dis. 2019 Apr;19(4):360-361. doi: 10.1016/S1473-3099(19)30114-8. Epub 2019 Mar 27. No abstract available.


The origins of the great pandemic.

Worobey M, Cox J, Gill D.

Evol Med Public Health. 2019 Jan 21;2019(1):18-25. doi: 10.1093/emph/eoz001. eCollection 2019. Review.


Origins of the 1918 Pandemic: Revisiting the Swine "Mixing Vessel" Hypothesis.

Nelson MI, Worobey M.

Am J Epidemiol. 2018 Dec 1;187(12):2498-2502. doi: 10.1093/aje/kwy150.


Ancient DNA provides evidence of 27,000-year-old papillomavirus infection and long-term codivergence with rodents.

Larsen BB, Cole KL, Worobey M.

Virus Evol. 2018 Jun 15;4(1):vey014. doi: 10.1093/ve/vey014. eCollection 2018 Jan.


Epidemiology: Molecular mapping of Zika spread.

Worobey M.

Nature. 2017 Jun 15;546(7658):355-357. doi: 10.1038/nature22495. Epub 2017 May 24. No abstract available.


Maternal antibodies' role in immunity-Response.

Gostic KM, Ambrose M, Worobey M, Lloyd-Smith JO.

Science. 2017 Feb 17;355(6326):705. doi: 10.1126/science.aam7389. No abstract available.


Foamy-like endogenous retroviruses are extensive and abundant in teleosts.

Ruboyianes R, Worobey M.

Virus Evol. 2016 Oct 30;2(2):vew032. doi: 10.1093/ve/vew032. eCollection 2016 Jul.


Potent protection against H5N1 and H7N9 influenza via childhood hemagglutinin imprinting.

Gostic KM, Ambrose M, Worobey M, Lloyd-Smith JO.

Science. 2016 Nov 11;354(6313):722-726.


1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America.

Worobey M, Watts TD, McKay RA, Suchard MA, Granade T, Teuwen DE, Koblin BA, Heneine W, Lemey P, Jaffe HW.

Nature. 2016 Nov 3;539(7627):98-101. doi: 10.1038/nature19827. Epub 2016 Oct 26.


A primitive endogenous lentivirus in a colugo: insights into the early evolution of lentiviruses.

Han GZ, Worobey M.

Mol Biol Evol. 2015 Jan;32(1):211-5. doi: 10.1093/molbev/msu297. Epub 2014 Oct 27.


Genesis and pathogenesis of the 1918 pandemic H1N1 influenza A virus.

Worobey M, Han GZ, Rambaut A.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8107-12. doi: 10.1073/pnas.1324197111. Epub 2014 Apr 28.


A synchronized global sweep of the internal genes of modern avian influenza virus.

Worobey M, Han GZ, Rambaut A.

Nature. 2014 Apr 10;508(7495):254-7. doi: 10.1038/nature13016. Epub 2014 Feb 16.


Geographical variation of human gut microbial composition.

Suzuki TA, Worobey M.

Biol Lett. 2014 Feb 12;10(2):20131037. doi: 10.1098/rsbl.2013.1037. Print 2014 Feb.


Eastern chimpanzees, but not bonobos, represent a simian immunodeficiency virus reservoir.

Li Y, Ndjango JB, Learn GH, Ramirez MA, Keele BF, Bibollet-Ruche F, Liu W, Easlick JL, Decker JM, Rudicell RS, Inogwabini BI, Ahuka-Mundeke S, Leendertz FH, Reynolds V, Muller MN, Chancellor RL, Rundus AS, Simmons N, Worobey M, Shaw GM, Peeters M, Sharp PM, Hahn BH.

J Virol. 2012 Oct;86(19):10776-91. doi: 10.1128/JVI.01498-12. Epub 2012 Jul 25.


An endogenous foamy-like viral element in the coelacanth genome.

Han GZ, Worobey M.

PLoS Pathog. 2012;8(6):e1002790. doi: 10.1371/journal.ppat.1002790. Epub 2012 Jun 28.


An endogenous foamy virus in the aye-aye (Daubentonia madagascariensis).

Han GZ, Worobey M.

J Virol. 2012 Jul;86(14):7696-8. doi: 10.1128/JVI.00650-12. Epub 2012 May 9.


Endogenous lentiviral elements in the weasel family (Mustelidae).

Han GZ, Worobey M.

Mol Biol Evol. 2012 Oct;29(10):2905-8. Epub 2012 Apr 20.


Transmission of HIV-1 drug resistance in Benin could jeopardise future treatment options.

Chamberland A, Diabaté S, Sylla M, Anagounou S, Geraldo N, Zannou DM, Labbé AC, Worobey M, Alary M, Tremblay C.

Sex Transm Infect. 2012 Apr;88(3):179-83. doi: 10.1136/sextrans-2011-050209. Epub 2011 Dec 12.


Homologous recombination in negative sense RNA viruses.

Han GZ, Worobey M.

Viruses. 2011 Aug;3(8):1358-73. doi: 10.3390/v3081358. Epub 2011 Aug 4. Review.


Evolutionary relationships of wild hominids recapitulated by gut microbial communities.

Ochman H, Worobey M, Kuo CH, Ndjango JB, Peeters M, Hahn BH, Hugenholtz P.

PLoS Biol. 2010 Nov 16;8(11):e1000546. doi: 10.1371/journal.pbio.1000546.


Island biogeography reveals the deep history of SIV.

Worobey M, Telfer P, Souquière S, Hunter M, Coleman CA, Metzger MJ, Reed P, Makuwa M, Hearn G, Honarvar S, Roques P, Apetrei C, Kazanji M, Marx PA.

Science. 2010 Sep 17;329(5998):1487. doi: 10.1126/science.1193550. Erratum in: Science. 2010 Dec 3;330(6009):1319.


Evolutionary history of chimpanzees inferred from complete mitochondrial genomes.

Bjork A, Liu W, Wertheim JO, Hahn BH, Worobey M.

Mol Biol Evol. 2011 Jan;28(1):615-23. doi: 10.1093/molbev/msq227. Epub 2010 Aug 28.


Relaxed molecular clocks, the bias-variance trade-off, and the quality of phylogenetic inference.

Wertheim JO, Sanderson MJ, Worobey M, Bjork A.

Syst Biol. 2010 Jan;59(1):1-8. doi: 10.1093/sysbio/syp072. Epub 2009 Oct 13.


Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.

Smith GJ, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JS, Guan Y, Rambaut A.

Nature. 2009 Jun 25;459(7250):1122-5. doi: 10.1038/nature08182.


Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2.

Wertheim JO, Worobey M.

PLoS Comput Biol. 2009 May;5(5):e1000377. doi: 10.1371/journal.pcbi.1000377. Epub 2009 May 1.


Relaxed selection and the evolution of RNA virus mucin-like pathogenicity factors.

Wertheim JO, Worobey M.

J Virol. 2009 May;83(9):4690-4. doi: 10.1128/JVI.02358-08. Epub 2009 Feb 18.


Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960.

Worobey M, Gemmel M, Teuwen DE, Haselkorn T, Kunstman K, Bunce M, Muyembe JJ, Kabongo JM, Kalengayi RM, Van Marck E, Gilbert MT, Wolinsky SM.

Nature. 2008 Oct 2;455(7213):661-4. doi: 10.1038/nature07390.


Molecular ecology and natural history of simian foamy virus infection in wild-living chimpanzees.

Liu W, Worobey M, Li Y, Keele BF, Bibollet-Ruche F, Guo Y, Goepfert PA, Santiago ML, Ndjango JB, Neel C, Clifford SL, Sanz C, Kamenya S, Wilson ML, Pusey AE, Gross-Camp N, Boesch C, Smith V, Zamma K, Huffman MA, Mitani JC, Watts DP, Peeters M, Shaw GM, Switzer WM, Sharp PM, Hahn BH.

PLoS Pathog. 2008 Jul 4;4(7):e1000097. doi: 10.1371/journal.ppat.1000097.


Reply to Pape et al.: the phylogeography of HIV-1 group M subtype B.

Worobey M, Pitchenik AE, Gilbert MT, Wlasiuk G, Rambaut A.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):E16. doi: 10.1073/pnas.0712128105. Epub 2008 Mar 12. No abstract available.


Phylogenetic evidence against evolutionary stasis and natural abiotic reservoirs of influenza A virus.

Worobey M.

J Virol. 2008 Apr;82(7):3769-74. doi: 10.1128/JVI.02207-07. Epub 2008 Jan 30.


Population genetics provides evidence for recombination in Giardia.

Cooper MA, Adam RD, Worobey M, Sterling CR.

Curr Biol. 2007 Nov 20;17(22):1984-8. Epub 2007 Nov 1.


The emergence of HIV/AIDS in the Americas and beyond.

Gilbert MT, Rambaut A, Wlasiuk G, Spira TJ, Pitchenik AE, Worobey M.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18566-70. Epub 2007 Oct 31.


Stable isotope and DNA evidence for ritual sequences in Inca child sacrifice.

Wilson AS, Taylor T, Ceruti MC, Chavez JA, Reinhard J, Grimes V, Meier-Augenstein W, Cartmell L, Stern B, Richards MP, Worobey M, Barnes I, Gilbert MT.

Proc Natl Acad Sci U S A. 2007 Oct 16;104(42):16456-61. Epub 2007 Oct 8.


The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?

Gilbert MT, Haselkorn T, Bunce M, Sanchez JJ, Lucas SB, Jewell LD, Van Marck E, Worobey M.

PLoS One. 2007 Jun 20;2(6):e537.


Multiplex PCR with minisequencing as an effective high-throughput SNP typing method for formalin-fixed tissue.

Gilbert MT, Sanchez JJ, Haselkorn T, Jewell LD, Lucas SB, Van Marck E, Børsting C, Morling N, Worobey M.

Electrophoresis. 2007 Jul;28(14):2361-7.


mtDNA from hair and nail clarifies the genetic relationship of the 15th century Qilakitsoq Inuit mummies.

Gilbert MT, Djurhuus D, Melchior L, Lynnerup N, Worobey M, Wilson AS, Andreasen C, Dissing J.

Am J Phys Anthropol. 2007 Jun;133(2):847-53. Erratum in: Am J Phys Anthropol. 2007 Aug;133(4):1174.


DNA extraction from dry museum beetles without conferring external morphological damage.

Gilbert MT, Moore W, Melchior L, Worobey M.

PLoS One. 2007 Mar 7;2(3):e272.


Anthrax and the art of war (against ascertainment bias).

Worobey M.

Heredity (Edinb). 2005 May;94(5):459-60. No abstract available.


Detection of TT virus among chimpanzees in the wild using a noninvasive technique.

Barnett OE, Worobey M, Holmes EC, Cooper A.

J Wildl Dis. 2004 Apr;40(2):230-7.


The molecular population genetics of HIV-1 group O.

Lemey P, Pybus OG, Rambaut A, Drummond AJ, Robertson DL, Roques P, Worobey M, Vandamme AM.

Genetics. 2004 Jul;167(3):1059-68.


Identification of a highly divergent HIV type 2 and proposal for a change in HIV type 2 classification.

Damond F, Worobey M, Campa P, Farfara I, Colin G, Matheron S, Brun-Vézinet F, Robertson DL, Simon F.

AIDS Res Hum Retroviruses. 2004 Jun;20(6):666-72.


Origin of AIDS: contaminated polio vaccine theory refuted.

Worobey M, Santiago ML, Keele BF, Ndjango JB, Joy JB, Labama BL, Dhed'A BD, Rambaut A, Sharp PM, Shaw GM, Hahn BH.

Nature. 2004 Apr 22;428(6985):820.


Evolution of R5 and X4 human immunodeficiency virus type 1 gag sequences in vivo: evidence for recombination.

van Rij RP, Worobey M, Visser JA, Schuitemaker H.

Virology. 2003 Sep 15;314(1):451-9.


Epidemiology: Sexual transmission of HIV in Africa.

Walker PR, Worobey M, Rambaut A, Holmes EC, Pybus OG.

Nature. 2003 Apr 17;422(6933):679. No abstract available.


Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus.

Worobey M, Rambaut A, Pybus OG, Robertson DL.

Science. 2002 Apr 12;296(5566):211 discussion 211. No abstract available.

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