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Items: 1 to 50 of 65

1.

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection.

Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE.

ISME J. 2019 Jul 18. doi: 10.1038/s41396-019-0472-2. [Epub ahead of print]

PMID:
31320727
2.

Closely related viruses of the marine picoeukaryotic alga Ostreococcus lucimarinus exhibit different ecological strategies.

Zimmerman AE, Bachy C, Ma X, Roux S, Jang HB, Sullivan MB, Waldbauer JR, Worden AZ.

Environ Microbiol. 2019 Jun;21(6):2148-2170. doi: 10.1111/1462-2920.14608. Epub 2019 May 13.

3.

Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods.

Strassert JFH, Hehenberger E, Del Campo J, Okamoto N, Kolisko M, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

J Eukaryot Microbiol. 2019 Jul;66(4):574-581. doi: 10.1111/jeu.12701. Epub 2018 Dec 11.

PMID:
30444565
4.

Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida.

Joo S, Wang MH, Lui G, Lee J, Barnas A, Kim E, Sudek S, Worden AZ, Lee JH.

BMC Biol. 2018 Nov 5;16(1):136. doi: 10.1186/s12915-018-0605-5.

5.

A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp.

Okamoto N, Gawryluk RMR, Del Campo J, Strassert JFH, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

J Eukaryot Microbiol. 2019 May;66(3):519-524. doi: 10.1111/jeu.12679. Epub 2018 Aug 29.

PMID:
30080299
6.

Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation.

Guo J, Wilken S, Jimenez V, Choi CJ, Ansong C, Dannebaum R, Sudek L, Milner DS, Bachy C, Reistetter EN, Elrod VA, Klimov D, Purvine SO, Wei CL, Kunde-Ramamoorthy G, Richards TA, Goodenough U, Smith RD, Callister SJ, Worden AZ.

Nat Microbiol. 2018 Jul;3(7):781-790. doi: 10.1038/s41564-018-0178-7. Epub 2018 Jun 25.

PMID:
29946165
7.

Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions.

Bachy C, Charlesworth CJ, Chan AM, Finke JF, Wong CH, Wei CL, Sudek S, Coleman ML, Suttle CA, Worden AZ.

Environ Microbiol. 2018 Aug;20(8):2898-2912. doi: 10.1111/1462-2920.14273. Epub 2018 Sep 9.

PMID:
29749714
8.

Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing.

Orsi WD, Wilken S, Del Campo J, Heger T, James E, Richards TA, Keeling PJ, Worden AZ, Santoro AE.

Environ Microbiol. 2018 Feb;20(2):815-827. doi: 10.1111/1462-2920.14018. Epub 2018 Jan 2.

PMID:
29215213
9.

Globally Important Haptophyte Algae Use Exogenous Pyrimidine Compounds More Efficiently than Thiamin.

Gutowska MA, Shome B, Sudek S, McRose DL, Hamilton M, Giovannoni SJ, Begley TP, Worden AZ.

MBio. 2017 Oct 10;8(5). pii: e01459-17. doi: 10.1128/mBio.01459-17.

10.

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.

Strassert JFH, Karnkowska A, Hehenberger E, Del Campo J, Kolisko M, Okamoto N, Burki F, Janouškovec J, Poirier C, Leonard G, Hallam SJ, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

ISME J. 2018 Jan;12(1):304-308. doi: 10.1038/ismej.2017.167. Epub 2017 Oct 10.

11.

Quantitative biogeography of picoprasinophytes establishes ecotype distributions and significant contributions to marine phytoplankton.

Limardo AJ, Sudek S, Choi CJ, Poirier C, Rii YM, Blum M, Roth R, Goodenough U, Church MJ, Worden AZ.

Environ Microbiol. 2017 Aug;19(8):3219-3234. doi: 10.1111/1462-2920.13812. Epub 2017 Jul 13.

PMID:
28585420
12.

Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress.

Cuvelier ML, Guo J, Ortiz AC, van Baren MJ, Tariq MA, Partensky F, Worden AZ.

PLoS One. 2017 Mar 9;12(3):e0172135. doi: 10.1371/journal.pone.0172135. eCollection 2017.

13.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV.

Nature. 2017 Jan 26;541(7638):536-540. doi: 10.1038/nature20803. Epub 2017 Jan 16.

14.

Newly discovered deep-branching marine plastid lineages are numerically rare but globally distributed.

Choi CJ, Bachy C, Jaeger GS, Poirier C, Sudek L, Sarma VVSS, Mahadevan A, Giovannoni SJ, Worden AZ.

Curr Biol. 2017 Jan 9;27(1):R15-R16. doi: 10.1016/j.cub.2016.11.032.

15.

Morphological Identification and Single-Cell Genomics of Marine Diplonemids.

Gawryluk RMR, Del Campo J, Okamoto N, Strassert JFH, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

Curr Biol. 2016 Nov 21;26(22):3053-3059. doi: 10.1016/j.cub.2016.09.013.

16.

Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ.

Nat Rev Microbiol. 2017 Jan;15(1):6-20. doi: 10.1038/nrmicro.2016.160. Epub 2016 Nov 21. Review.

PMID:
27867198
17.

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer.

Gregory AC, Solonenko SA, Ignacio-Espinoza JC, LaButti K, Copeland A, Sudek S, Maitland A, Chittick L, Dos Santos F, Weitz JS, Worden AZ, Woyke T, Sullivan MB.

BMC Genomics. 2016 Nov 16;17(1):930.

18.

A plankton bloom shifts as the ocean warms.

Worden AZ, Wilken S.

Science. 2016 Oct 21;354(6310):287-288. No abstract available.

PMID:
27846518
19.

Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla.

Waltman PH, Guo J, Reistetter EN, Purvine S, Ansong CK, van Baren MJ, Wong CH, Wei CL, Smith RD, Callister SJ, Stuart JM, Worden AZ.

PLoS One. 2016 Jul 19;11(7):e0155839. doi: 10.1371/journal.pone.0155839. eCollection 2016.

20.

Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.

van Baren MJ, Bachy C, Reistetter EN, Purvine SO, Grimwood J, Sudek S, Yu H, Poirier C, Deerinck TJ, Kuo A, Grigoriev IV, Wong CH, Smith RD, Callister SJ, Wei CL, Schmutz J, Worden AZ.

BMC Genomics. 2016 Mar 31;17:267. doi: 10.1186/s12864-016-2585-6.

21.

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean.

Orsi WD, Smith JM, Liu S, Liu Z, Sakamoto CM, Wilken S, Poirier C, Richards TA, Keeling PJ, Worden AZ, Santoro AE.

ISME J. 2016 Sep;10(9):2158-73. doi: 10.1038/ismej.2016.20. Epub 2016 Mar 8.

22.

Phylogenetic diversity and biogeography of the Mamiellophyceae lineage of eukaryotic phytoplankton across the oceans.

Monier A, Worden AZ, Richards TA.

Environ Microbiol Rep. 2016 Aug;8(4):461-9. doi: 10.1111/1758-2229.12390. Epub 2016 Jun 3.

PMID:
26929141
23.

Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean.

Simmons MP, Sudek S, Monier A, Limardo AJ, Jimenez V, Perle CR, Elrod VA, Pennington JT, Worden AZ.

Appl Environ Microbiol. 2016 Jan 4;82(6):1693-1705. doi: 10.1128/AEM.02730-15.

24.

Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre.

Ribalet F, Swalwell J, Clayton S, Jiménez V, Sudek S, Lin Y, Johnson ZI, Worden AZ, Armbrust EV.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8008-12. doi: 10.1073/pnas.1424279112. Epub 2015 Jun 15.

25.

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

Ševčíková T, Horák A, Klimeš V, Zbránková V, Demir-Hilton E, Sudek S, Jenkins J, Schmutz J, Přibyl P, Fousek J, Vlček Č, Lang BF, Oborník M, Worden AZ, Eliáš M.

Sci Rep. 2015 May 28;5:10134. doi: 10.1038/srep10134.

26.

Microbiology: Exclusive networks in the sea.

Limardo AJ, Worden AZ.

Nature. 2015 Jun 4;522(7554):36-7. doi: 10.1038/nature14530. Epub 2015 May 27. No abstract available.

PMID:
26017309
27.

Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations.

Simmons MP, Bachy C, Sudek S, van Baren MJ, Sudek L, Ares M Jr, Worden AZ.

Mol Biol Evol. 2015 Sep;32(9):2219-35. doi: 10.1093/molbev/msv122. Epub 2015 May 20.

28.

Diversity of Viruses Infecting the Green Microalga Ostreococcus lucimarinus.

Derelle E, Monier A, Cooke R, Worden AZ, Grimsley NH, Moreau H.

J Virol. 2015 Jun;89(11):5812-21. doi: 10.1128/JVI.00246-15. Epub 2015 Mar 18.

29.

Environmental science. Rethinking the marine carbon cycle: factoring in the multifarious lifestyles of microbes.

Worden AZ, Follows MJ, Giovannoni SJ, Wilken S, Zimmerman AE, Keeling PJ.

Science. 2015 Feb 13;347(6223):1257594. doi: 10.1126/science.1257594. Review.

PMID:
25678667
30.

Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter.

Orsi WD, Smith JM, Wilcox HM, Swalwell JE, Carini P, Worden AZ, Santoro AE.

ISME J. 2015 Aug;9(8):1747-63. doi: 10.1038/ismej.2014.260. Epub 2015 Jan 23.

31.

Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean.

Sudek S, Everroad RC, Gehman AL, Smith JM, Poirier CL, Chavez FP, Worden AZ.

Environ Microbiol. 2015 Oct;17(10):3692-707. doi: 10.1111/1462-2920.12742. Epub 2015 Mar 6.

PMID:
25522910
32.

Marine algae and land plants share conserved phytochrome signaling systems.

Duanmu D, Bachy C, Sudek S, Wong CH, Jiménez V, Rockwell NC, Martin SS, Ngan CY, Reistetter EN, van Baren MJ, Price DC, Wei CL, Reyes-Prieto A, Lagarias JC, Worden AZ.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15827-32. doi: 10.1073/pnas.1416751111. Epub 2014 Sep 29.

33.

Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages.

McRose D, Guo J, Monier A, Sudek S, Wilken S, Yan S, Mock T, Archibald JM, Begley TP, Reyes-Prieto A, Worden AZ.

ISME J. 2014 Dec;8(12):2517-29. doi: 10.1038/ismej.2014.146. Epub 2014 Aug 29.

34.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

35.

Microbial ecology: finding structure in the rare biosphere.

Bachy C, Worden AZ.

Curr Biol. 2014 Apr 14;24(8):R315-7. doi: 10.1016/j.cub.2014.03.029.

36.

Eukaryotic algal phytochromes span the visible spectrum.

Rockwell NC, Duanmu D, Martin SS, Bachy C, Price DC, Bhattacharya D, Worden AZ, Lagarias JC.

Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3871-6. doi: 10.1073/pnas.1401871111. Epub 2014 Feb 24. Erratum in: Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):E1051.

37.

Pan genome of the phytoplankton Emiliania underpins its global distribution.

Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV.

Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221. Epub 2013 Jun 12.

PMID:
23760476
38.

Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity.

Monier A, Sudek S, Fast NM, Worden AZ.

ISME J. 2013 Sep;7(9):1764-74. doi: 10.1038/ismej.2013.70. Epub 2013 May 2.

39.

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.

Vergin KL, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ.

ISME J. 2013 Jul;7(7):1322-32. doi: 10.1038/ismej.2013.32. Epub 2013 Mar 7.

40.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
41.

Global distribution of a wild alga revealed by targeted metagenomics.

Worden AZ, Janouskovec J, McRose D, Engman A, Welsh RM, Malfatti S, Tringe SG, Keeling PJ.

Curr Biol. 2012 Sep 11;22(17):R675-7. doi: 10.1016/j.cub.2012.07.054. No abstract available.

42.

Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean.

Lin YC, Campbell T, Chung CC, Gong GC, Chiang KP, Worden AZ.

Appl Environ Microbiol. 2012 May;78(9):3387-99. doi: 10.1128/AEM.06952-11. Epub 2012 Feb 17.

43.

Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids.

Treusch AH, Demir-Hilton E, Vergin KL, Worden AZ, Carlson CA, Donatz MG, Burton RM, Giovannoni SJ.

ISME J. 2012 Mar;6(3):481-92. doi: 10.1038/ismej.2011.117. Epub 2011 Sep 29.

44.

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges.

Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, Armbrust EV, Eisen JA, Worden AZ.

Environ Microbiol. 2012 Jan;14(1):162-76. doi: 10.1111/j.1462-2920.2011.02576.x. Epub 2011 Sep 14.

45.

Differential distributions of synechococcus subgroups across the california current system.

Paerl RW, Johnson KS, Welsh RM, Worden AZ, Chavez FP, Zehr JP.

Front Microbiol. 2011 Apr 4;2:59. doi: 10.3389/fmicb.2011.00059. eCollection 2011.

46.

Genomes of uncultured eukaryotes: sorting FACS from fiction.

Worden AZ, Dupont C, Allen AE.

Genome Biol. 2011 Jun 27;12(6):117. doi: 10.1186/gb-2011-12-6-117.

47.

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus.

Demir-Hilton E, Sudek S, Cuvelier ML, Gentemann CL, Zehr JP, Worden AZ.

ISME J. 2011 Jul;5(7):1095-107. doi: 10.1038/ismej.2010.209. Epub 2011 Feb 3.

48.

Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life.

Kim E, Harrison JW, Sudek S, Jones MD, Wilcox HM, Richards TA, Worden AZ, Archibald JM.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1496-500. doi: 10.1073/pnas.1013337108. Epub 2011 Jan 4.

49.

The voyage of the microbial eukaryote.

Worden AZ, Allen AE.

Curr Opin Microbiol. 2010 Oct;13(5):652-60. doi: 10.1016/j.mib.2010.08.001. Epub 2010 Sep 9.

PMID:
20832353
50.

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton.

Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP, Worden AZ.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14679-84. doi: 10.1073/pnas.1001665107. Epub 2010 Jul 28.

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