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Items: 20

1.

Phylogeography of rubella virus in Asia: Vaccination and demography shape synchronous outbreaks.

Bozick BA, Worby CJ, Metcalf CJE.

Epidemics. 2019 Sep;28:100346. doi: 10.1016/j.epidem.2019.100346. Epub 2019 May 28.

2.

Model diagnostics and refinement for phylodynamic models.

Lau MSY, Grenfell BT, Worby CJ, Gibson GJ.

PLoS Comput Biol. 2019 Apr 5;15(4):e1006955. doi: 10.1371/journal.pcbi.1006955. eCollection 2019 Apr.

3.

On the Role of Different Age Groups and Pertussis Vaccines During the 2012 Outbreak in Wisconsin.

Goldstein E, Worby CJ, Lipsitch M.

Open Forum Infect Dis. 2018 Apr 16;5(5):ofy082. doi: 10.1093/ofid/ofy082. eCollection 2018 May.

4.

Bayesian reconstruction of transmission within outbreaks using genomic variants.

De Maio N, Worby CJ, Wilson DJ, Stoesser N.

PLoS Comput Biol. 2018 Apr 18;14(4):e1006117. doi: 10.1371/journal.pcbi.1006117. eCollection 2018 Apr.

5.

Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data.

Worby CJ, Lipsitch M, Hanage WP.

Am J Epidemiol. 2017 Nov 15;186(10):1209-1216. doi: 10.1093/aje/kwx182.

6.

On the Relative Role of Different Age Groups During Epidemics Associated With Respiratory Syncytial Virus.

Goldstein E, Nguyen HH, Liu P, Viboud C, Steiner CA, Worby CJ, Lipsitch M.

J Infect Dis. 2018 Jan 4;217(2):238-244. doi: 10.1093/infdis/jix575.

7.

Penicillin Resistance of Nonvaccine Type Pneumococcus before and after PCV13 Introduction, United States.

Andam CP, Worby CJ, Gierke R, McGee L, Pilishvili T, Hanage WP.

Emerg Infect Dis. 2017 Jun;23(6):1012-1015. doi: 10.3201/eid2306.161331.

8.

Population effect of influenza vaccination under co-circulation of non-vaccine variants and the case for a bivalent A/H3N2 vaccine component.

Worby CJ, Wallinga J, Lipsitch M, Goldstein E.

Epidemics. 2017 Jun;19:74-82. doi: 10.1016/j.epidem.2017.02.008. Epub 2017 Feb 21.

9.

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.

Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B.

PLoS Comput Biol. 2017 Jan 26;13(1):e1005348. doi: 10.1371/journal.pcbi.1005348. eCollection 2017 Jan.

10.

Microbial Genomics of Ancient Plagues and Outbreaks.

Andam CP, Worby CJ, Chang Q, Campana MG.

Trends Microbiol. 2016 Dec;24(12):978-990. doi: 10.1016/j.tim.2016.08.004. Epub 2016 Sep 8. Review.

PMID:
27618404
11.

Reconstructing transmission trees for communicable diseases using densely sampled genetic data.

Worby CJ, O'Neill PD, Kypraios T, Robotham JV, De Angelis D, Cartwright EJ, Peacock SJ, Cooper BS.

Ann Appl Stat. 2016 Mar;10(1):395-417. Epub 2016 Mar 25.

12.

More Research Is Needed to Quantify Risks, Benefits, and Cost-Effectiveness of Universal Mupirocin Usage.

Deeny SR, Worby CJ, Tosas Auguet O, Cooper BS, Edgeworth J, Cookson B, Robotham JV.

Clin Infect Dis. 2016 May 1;62(9):1193-4. doi: 10.1093/cid/ciw077. Epub 2016 Feb 21. No abstract available.

PMID:
26908798
13.

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.

Chang HH, Dordel J, Donker T, Worby CJ, Feil EJ, Hanage WP, Bentley SD, Huang SS, Lipsitch M.

Genome Med. 2016 Feb 13;8(1):18. doi: 10.1186/s13073-016-0274-3.

14.

Impact of mupirocin resistance on the transmission and control of healthcare-associated MRSA.

Deeny SR, Worby CJ, Tosas Auguet O, Cooper BS, Edgeworth J, Cookson B, Robotham JV.

J Antimicrob Chemother. 2015 Dec;70(12):3366-78. doi: 10.1093/jac/dkv249. Epub 2015 Sep 3.

15.

Examining the role of different age groups, and of vaccination during the 2012 Minnesota pertussis outbreak.

Worby CJ, Kenyon C, Lynfield R, Lipsitch M, Goldstein E.

Sci Rep. 2015 Aug 17;5:13182. doi: 10.1038/srep13182.

16.

On the relative role of different age groups in influenza epidemics.

Worby CJ, Chaves SS, Wallinga J, Lipsitch M, Finelli L, Goldstein E.

Epidemics. 2015 Dec;13:10-16.

17.

'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens.

Worby CJ, Read TD.

PLoS One. 2015 Jun 15;10(6):e0129745. doi: 10.1371/journal.pone.0129745. eCollection 2015.

18.

The distribution of pairwise genetic distances: a tool for investigating disease transmission.

Worby CJ, Chang HH, Hanage WP, Lipsitch M.

Genetics. 2014 Dec;198(4):1395-404. doi: 10.1534/genetics.114.171538. Epub 2014 Oct 13.

19.

Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data.

Worby CJ, Lipsitch M, Hanage WP.

PLoS Comput Biol. 2014 Mar 27;10(3):e1003549. doi: 10.1371/journal.pcbi.1003549. eCollection 2014 Mar.

20.

Estimating the effectiveness of isolation and decolonization measures in reducing transmission of methicillin-resistant Staphylococcus aureus in hospital general wards.

Worby CJ, Jeyaratnam D, Robotham JV, Kypraios T, O'Neill PD, De Angelis D, French G, Cooper BS.

Am J Epidemiol. 2013 Jun 1;177(11):1306-13. doi: 10.1093/aje/kws380. Epub 2013 Apr 16.

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