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Tissue tropism and transmission ecology predict virulence of human RNA viruses.

Brierley L, Pedersen AB, Woolhouse MEJ.

PLoS Biol. 2019 Nov 26;17(11):e3000206. doi: 10.1371/journal.pbio.3000206. eCollection 2019 Nov.


Statistical modelling of data showing pandemic H1N1 2009 swine influenza a virus infection kinetics in vaccinated pigs.

Canini L, Everett HE, Aramouni M, Coward V, Ramsay A, Kelly M, Morgan S, Tchilian E, Gilbert S, Charleston B, Brown IH, Brookes SM, Woolhouse MEJ.

Data Brief. 2019 Sep 28;27:104576. doi: 10.1016/j.dib.2019.104576. eCollection 2019 Dec.


Epidemiology of antimicrobial-resistant Escherichia coli carriage in sympatric humans and livestock in a rapidly urbanizing city.

Muloi D, Kiiru J, Ward MJ, Hassell JM, Bettridge JM, Robinson TP, van Bunnik BAD, Chase-Topping M, Robertson G, Pedersen AB, Fèvre EM, Woolhouse MEJ, Kang'ethe EK, Kariuki S.

Int J Antimicrob Agents. 2019 Nov;54(5):531-537. doi: 10.1016/j.ijantimicag.2019.08.014. Epub 2019 Aug 19.


One Health in Action: Operational Aspects of an Integrated Surveillance System for Zoonoses in Western Kenya.

Falzon LC, Alumasa L, Amanya F, Kang'ethe E, Kariuki S, Momanyi K, Muinde P, Murungi MK, Njoroge SM, Ogendo A, Ogola J, Rushton J, Woolhouse MEJ, Fèvre EM.

Front Vet Sci. 2019 Jul 31;6:252. doi: 10.3389/fvets.2019.00252. eCollection 2019.


Clinically relevant antimicrobial resistance at the wildlife-livestock-human interface in Nairobi: an epidemiological study.

Hassell JM, Ward MJ, Muloi D, Bettridge JM, Robinson TP, Kariuki S, Ogendo A, Kiiru J, Imboma T, Kang'ethe EK, Öghren EM, Williams NJ, Begon M, Woolhouse MEJ, Fèvre EM.

Lancet Planet Health. 2019 Jun;3(6):e259-e269. doi: 10.1016/S2542-5196(19)30083-X. Erratum in: Lancet Planet Health. 2019 Jul;3(7):e294.


Deterministic processes structure bacterial genetic communities across an urban landscape.

Hassell JM, Ward MJ, Muloi D, Bettridge JM, Phan H, Robinson TP, Ogendo A, Imboma T, Kiiru J, Kariuki S, Begon M, Kang'ethe EK, Woolhouse MEJ, Fèvre EM.

Nat Commun. 2019 Jun 14;10(1):2643. doi: 10.1038/s41467-019-10595-1.


Vaccine-mediated protection of pigs against infection with pandemic H1N1 2009 swine influenza A virus requires a close antigenic match between the vaccine antigen and challenge virus.

Everett HE, Aramouni M, Coward V, Ramsay A, Kelly M, Morgan S, Tchilian E, Canini L, Woolhouse MEJ, Gilbert S, Charleston B, Brown IH, Brookes SM.

Vaccine. 2019 Apr 17;37(17):2288-2293. doi: 10.1016/j.vaccine.2019.02.078. Epub 2019 Mar 23.


Population level changes in schistosome-specific antibody levels following chemotherapy.

Fukushige M, Mutapi F, Woolhouse MEJ.

Parasite Immunol. 2019 Jan;41(1):e12604. doi: 10.1111/pim.12604.


Evidence of a distinct group of Black African patients with systemic lupus erythematosus.

Sibanda EN, Chase-Topping M, Pfavayi LT, Woolhouse MEJ, Mutapi F.

BMJ Glob Health. 2018 Sep 16;3(5):e000697. doi: 10.1136/bmjgh-2017-000697. eCollection 2018.


Are Food Animals Responsible for Transfer of Antimicrobial-Resistant Escherichia coli or Their Resistance Determinants to Human Populations? A Systematic Review.

Muloi D, Ward MJ, Pedersen AB, Fèvre EM, Woolhouse MEJ, van Bunnik BAD.

Foodborne Pathog Dis. 2018 Aug;15(8):467-474. doi: 10.1089/fpd.2017.2411. Epub 2018 Apr 30.


Dynamics of paediatric urogenital schistosome infection, morbidity and treatment: a longitudinal study among preschool children in Zimbabwe.

Osakunor DNM, Mduluza T, Midzi N, Chase-Topping M, Mutsaka-Makuvaza MJ, Chimponda T, Eyoh E, Mduluza T, Pfavayi LT, Wami WM, Amanfo SA, Murray J, Tshuma C, Woolhouse MEJ, Mutapi F.

BMJ Glob Health. 2018 Mar 27;3(2):e000661. doi: 10.1136/bmjgh-2017-000661. eCollection 2018.


Epidemiological characteristics of human-infective RNA viruses.

Woolhouse MEJ, Brierley L.

Sci Data. 2018 Feb 20;5:180017. doi: 10.1038/sdata.2018.17.


Genetic diversity and cross-species transmission of kobuviruses in Vietnam.

Lu L, Van Dung N, Ivens A, Bogaardt C, O'Toole A, Bryant JE, Carrique-Mas J, Van Cuong N, Anh PH, Rabaa MA, Tue NT, Thwaites GE, Baker S, Simmonds P, Woolhouse ME; VIZIONS Consortium.

Virus Evol. 2018 Feb 13;4(1):vey002. doi: 10.1093/ve/vey002. eCollection 2018 Jan.


Paediatric schistosomiasis: What we know and what we need to know.

Osakunor DNM, Woolhouse MEJ, Mutapi F.

PLoS Negl Trop Dis. 2018 Feb 8;12(2):e0006144. doi: 10.1371/journal.pntd.0006144. eCollection 2018 Feb. Review.


Modelling the impact of curtailing antibiotic usage in food animals on antibiotic resistance in humans.

van Bunnik BAD, Woolhouse MEJ.

R Soc Open Sci. 2017 Apr 5;4(4):161067. doi: 10.1098/rsos.161067. eCollection 2017 Apr.


Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam.

Berto A, Anh PH, Carrique-Mas JJ, Simmonds P, Van Cuong N, Tue NT, Van Dung N, Woolhouse ME, Smith I, Marsh GA, Bryant JE, Thwaites GE, Baker S, Rabaa MA; VIZIONS consortium.

Zoonoses Public Health. 2018 Feb;65(1):30-42. doi: 10.1111/zph.12362. Epub 2017 Apr 18.


Vulnerability of the British swine industry to classical swine fever.

Porphyre T, Correia-Gomes C, Chase-Topping ME, Gamado K, Auty HK, Hutchinson I, Reeves A, Gunn GJ, Woolhouse ME.

Sci Rep. 2017 Feb 22;7:42992. doi: 10.1038/srep42992.


Heterogeneous shedding of influenza by human subjects and its implications for epidemiology and control.

Canini L, Woolhouse ME, Maines TR, Carrat F.

Sci Rep. 2016 Dec 14;6:38749. doi: 10.1038/srep38749.


Assessing the Epidemic Potential of RNA and DNA Viruses.

Woolhouse ME, Brierley L, McCaffery C, Lycett S.

Emerg Infect Dis. 2016 Dec;22(12):2037-2044. doi: 10.3201/eid2212.160123.


Modelling the impact of co-circulating low pathogenic avian influenza viruses on epidemics of highly pathogenic avian influenza in poultry.

Nickbakhsh S, Hall MD, Dorigatti I, Lycett SJ, Mulatti P, Monne I, Fusaro A, Woolhouse MEJ, Rambaut A, Kao RR.

Epidemics. 2016 Dec;17:27-34. doi: 10.1016/j.epidem.2016.10.005. Epub 2016 Oct 19.


Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam.

Lu L, Van Dung N, Bryant JE, Carrique-Mas J, Van Cuong N, Anh PH, Rabaa MA, Baker S, Simmonds P, Woolhouse ME.

Virus Evol. 2016 Feb 18;2(1):vew001. eCollection 2016 Jan.


Seroprevalence of respiratory viral pathogens of indigenous calves in Western Kenya.

Callaby R, Toye P, Jennings A, Thumbi SM, Coetzer JA, Conradie Van Wyk IC, Hanotte O, Mbole-Kariuki MN, Bronsvoort BM, Kruuk LE, Woolhouse ME, Kiara H.

Res Vet Sci. 2016 Oct;108:120-4. doi: 10.1016/j.rvsc.2016.08.010. Epub 2016 Aug 26.


Comparative Assessment of Health Benefits of Praziquantel Treatment of Urogenital Schistosomiasis in Preschool and Primary School-Aged Children.

Wami WM, Nausch N, Midzi N, Gwisai R, Mduluza T, Woolhouse ME, Mutapi F.

Biomed Res Int. 2016;2016:9162631. doi: 10.1155/2016/9162631. Epub 2016 Aug 18.


Antibiotic resistance: mitigation opportunities in livestock sector development.

Robinson TP, Bu DP, Carrique-Mas J, Fèvre EM, Gilbert M, Grace D, Hay SI, Jiwakanon J, Kakkar M, Kariuki S, Laxminarayan R, Lubroth J, Magnusson U, Thi Ngoc P, Van Boeckel TP, Woolhouse ME.

Animal. 2017 Jan;11(1):1-3. doi: 10.1017/S1751731116001828. Epub 2016 Aug 13. No abstract available.


Antibiotic resistance is the quintessential One Health issue.

Robinson TP, Bu DP, Carrique-Mas J, Fèvre EM, Gilbert M, Grace D, Hay SI, Jiwakanon J, Kakkar M, Kariuki S, Laxminarayan R, Lubroth J, Magnusson U, Thi Ngoc P, Van Boeckel TP, Woolhouse ME.

Trans R Soc Trop Med Hyg. 2016 Jul;110(7):377-80. doi: 10.1093/trstmh/trw048. Epub 2016 Jul 29. No abstract available.


Identification of source and sink populations for the emergence and global spread of the East-Asia clone of community-associated MRSA.

Ward MJ, Goncheva M, Richardson E, McAdam PR, Raftis E, Kearns A, Daum RS, David MZ, Lauderdale TL, Edwards GF, Nimmo GR, Coombs GW, Huijsdens X, Woolhouse ME, Fitzgerald JR.

Genome Biol. 2016 Jul 26;17(1):160. doi: 10.1186/s13059-016-1022-0.


Using genomics data to reconstruct transmission trees during disease outbreaks.

Hall MD, Woolhouse ME, Rambaut A.

Rev Sci Tech. 2016 Apr;35(1):287-96. doi: 10.20506/rst.35.1.2433.


Not just a matter of size: a hospital-level risk factor analysis of MRSA bacteraemia in Scotland.

Gibbons CL, van Bunnik BAD, Blatchford O, Robertson C, Porphyre T, Imrie L, Wilson J, Fitzgerald JR, Woolhouse MEJ, Chase-Topping ME.

BMC Infect Dis. 2016 May 21;16:222. doi: 10.1186/s12879-016-1563-6.


Using national movement databases to help inform responses to swine disease outbreaks in Scotland: the impact of uncertainty around incursion time.

Porphyre T, Boden LA, Correia-Gomes C, Auty HK, Gunn GJ, Woolhouse ME.

Sci Rep. 2016 Feb 1;6:20258. doi: 10.1038/srep20258.


Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam.

Van Dung N, Anh PH, Van Cuong N, Hoa NT, Carrique-Mas J, Hien VB, Sharp C, Rabaa M, Berto A, Campbell J, Baker S, Farrar J, Woolhouse ME, Bryant JE, Simmonds P.

J Gen Virol. 2016 Feb;97(2):378-388. doi: 10.1099/jgv.0.000366. Epub 2015 Dec 9.


Co-infections determine patterns of mortality in a population exposed to parasite infection.

Woolhouse ME, Thumbi SM, Jennings A, Chase-Topping M, Callaby R, Kiara H, Oosthuizen MC, Mbole-Kariuki MN, Conradie I, Handel IG, Poole EJ, Njiiri E, Collins NE, Murray G, Tapio M, Auguet OT, Weir W, Morrison WI, Kruuk LE, Bronsvoort BM, Hanotte O, Coetzer K, Toye PG.

Sci Adv. 2015 Mar 20;1(2):e1400026. doi: 10.1126/sciadv.1400026. eCollection 2015 Mar.


Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management.

Woolhouse ME, Rambaut A, Kellam P.

Sci Transl Med. 2015 Sep 30;7(307):307rv5. doi: 10.1126/scitranslmed.aab0191. Review.


The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases.

Rabaa MA, Tue NT, Phuc TM, Carrique-Mas J, Saylors K, Cotten M, Bryant JE, Nghia HD, Cuong NV, Pham HA, Berto A, Phat VV, Dung TT, Bao LH, Hoa NT, Wertheim H, Nadjm B, Monagin C, van Doorn HR, Rahman M, Tra MP, Campbell JI, Boni MF, Tam PT, van der Hoek L, Simmonds P, Rambaut A, Toan TK, Van Vinh Chau N, Hien TT, Wolfe N, Farrar JJ, Thwaites G, Kellam P, Woolhouse ME, Baker S.

Ecohealth. 2015 Dec;12(4):726-35. doi: 10.1007/s10393-015-1061-0. Epub 2015 Sep 24. Review.


Applying phylogenomics to understand the emergence of Shiga-toxin-producing Escherichia coli O157:H7 strains causing severe human disease in the UK.

Dallman TJ, Ashton PM, Byrne L, Perry NT, Petrovska L, Ellis R, Allison L, Hanson M, Holmes A, Gunn GJ, Chase-Topping ME, Woolhouse MEJ, Grant KA, Gally DL, Wain J, Jenkins C.

Microb Genom. 2015 Sep 14;1(3):e000029. doi: 10.1099/mgen.0.000029. eCollection 2015 Sep.


Controlling infectious disease through the targeted manipulation of contact network structure.

Gates MC, Woolhouse ME.

Epidemics. 2015 Sep;12:11-9. doi: 10.1016/j.epidem.2015.02.008. Epub 2015 Mar 6.


Efficient national surveillance for health-care-associated infections.

van Bunnik BA, Ciccolini M, Gibbons CL, Edwards G, Fitzgerald R, McAdam PR, Ward MJ, Laurenson IF, Woolhouse ME.

BMC Public Health. 2015 Aug 28;15:832. doi: 10.1186/s12889-015-2172-9.


Diversity of Bartonella spp. in Bats, Southern Vietnam.

Anh PH, Van Cuong N, Son NT, Tue NT, Kosoy M, Woolhouse ME, Baker S, Bryant JE, Thwaites G, Carrique-Mas JJ, Rabaa MA.

Emerg Infect Dis. 2015 Jul;21(7):1266-7. doi: 10.3201/eid2107.141760. No abstract available.


A Meta-Analysis of Experimental Studies of Attenuated Schistosoma mansoni Vaccines in the Mouse Model.

Fukushige M, Mitchell KM, Bourke CD, Woolhouse ME, Mutapi F.

Front Immunol. 2015 Feb 27;6:85. doi: 10.3389/fimmu.2015.00085. eCollection 2015.


Not all cows are epidemiologically equal: quantifying the risks of bovine viral diarrhoea virus (BVDV) transmission through cattle movements.

Gates MC, Humphry RW, Gunn GJ, Woolhouse ME.

Vet Res. 2014 Oct 17;45:110. doi: 10.1186/s13567-014-0110-y.


Variation and covariation in strongyle infection in East African shorthorn zebu calves.

Callaby R, Hanotte O, Conradie Van Wyk I, Kiara H, Toye P, Mbole-Kariuki MN, Jennings A, Thumbi SM, Coetzer JA, de C Bronsvoort BM, Knott SA, Woolhouse ME, Kruuk LE.

Parasitology. 2015 Mar;142(3):499-511. doi: 10.1017/S0031182014001498. Epub 2014 Sep 26.


Time-Scaled Evolutionary Analysis of the Transmission and Antibiotic Resistance Dynamics of Staphylococcus aureus Clonal Complex 398.

Ward MJ, Gibbons CL, McAdam PR, van Bunnik BA, Girvan EK, Edwards GF, Fitzgerald JR, Woolhouse ME.

Appl Environ Microbiol. 2014 Dec;80(23):7275-82. doi: 10.1128/AEM.01777-14. Epub 2014 Sep 19.


Novel porcine-like human G26P[19] rotavirus identified in hospitalized paediatric diarrhoea patients in Ho Chi Minh City, Vietnam.

My PV, Rabaa MA, Donato C, Cowley D, Phat VV, Dung TT, Anh PH, Vinh H, Bryant JE, Kellam P, Thwaites G, Woolhouse ME, Kirkwood CD, Baker S.

J Gen Virol. 2014 Dec;95(Pt 12):2727-33. doi: 10.1099/vir.0.068403-0. Epub 2014 Aug 13.


Predicted impact of mass drug administration on the development of protective immunity against Schistosoma haematobium.

Mitchell KM, Mutapi F, Mduluza T, Midzi N, Savill NJ, Woolhouse ME.

PLoS Negl Trop Dis. 2014 Jul 31;8(7):e3059. doi: 10.1371/journal.pntd.0003059. eCollection 2014.


How commercial and non-commercial swine producers move pigs in Scotland: a detailed descriptive analysis.

Porphyre T, Boden LA, Correia-Gomes C, Auty HK, Gunn GJ, Woolhouse ME.

BMC Vet Res. 2014 Jun 25;10:140. doi: 10.1186/1746-6148-10-140.


A longitudinal assessment of the serological response to Theileria parva and other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya.

Kiara H, Jennings A, Bronsvoort BM, Handel IG, Mwangi ST, Mbole-Kariuki M, Van Wyk IC, Poole EJ, Hanotte O, Coetzer JA, Woolhouse ME, Toye PG.

Parasitology. 2014 Sep;141(10):1289-98. doi: 10.1017/S003118201400050X. Epub 2014 May 16.


E. coli O157 on Scottish cattle farms: evidence of local spread and persistence using repeat cross-sectional data.

Herbert LJ, Vali L, Hoyle DV, Innocent G, McKendrick IJ, Pearce MC, Mellor D, Porphyre T, Locking M, Allison L, Hanson M, Matthews L, Gunn GJ, Woolhouse ME, Chase-Topping ME.

BMC Vet Res. 2014 Apr 26;10:95. doi: 10.1186/1746-6148-10-95.


Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya.

Mbole-Kariuki MN, Sonstegard T, Orth A, Thumbi SM, Bronsvoort BM, Kiara H, Toye P, Conradie I, Jennings A, Coetzer K, Woolhouse ME, Hanotte O, Tapio M.

Heredity (Edinb). 2014 Oct;113(4):297-305. doi: 10.1038/hdy.2014.31. Epub 2014 Apr 16.


Suboptimal herd performance amplifies the spread of infectious disease in the cattle industry.

Gates MC, Woolhouse ME.

PLoS One. 2014 Mar 26;9(3):e93410. doi: 10.1371/journal.pone.0093410. eCollection 2014.


High rates of infection with novel enterovirus variants in wild populations of mandrills and other old world monkey species.

Van Nguyen D, Harvala H, Ngole EM, Delaporte E, Woolhouse ME, Peeters M, Simmonds P.

J Virol. 2014 Jun;88(11):5967-76. doi: 10.1128/JVI.00088-14. Epub 2014 Mar 12.

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