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Ribosome assembly coming into focus.

Klinge S, Woolford JL Jr.

Nat Rev Mol Cell Biol. 2019 Feb;20(2):116-131. doi: 10.1038/s41580-018-0078-y. Review.


Hierarchical recruitment of ribosomal proteins and assembly factors remodels nucleolar pre-60S ribosomes.

Biedka S, Micic J, Wilson D, Brown H, Diorio-Toth L, Woolford JL Jr.

J Cell Biol. 2018 Jul 2;217(7):2503-2518. doi: 10.1083/jcb.201711037. Epub 2018 Apr 24.


Insights into remodeling events during eukaryotic large ribosomal subunit assembly provided by high resolution cryo-EM structures.

Biedka S, Wu S, LaPeruta AJ, Gao N, Woolford JL Jr.

RNA Biol. 2017 Oct 3;14(10):1306-1313. doi: 10.1080/15476286.2017.1297914. Epub 2017 Mar 7. Review.


The assembly factor Erb1 functions in multiple remodeling events during 60S ribosomal subunit assembly in S. cerevisiae.

Konikkat S, Biedka S, Woolford JL Jr.

Nucleic Acids Res. 2017 May 5;45(8):4853-4865. doi: 10.1093/nar/gkw1361.


Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1.

Ma C, Wu S, Li N, Chen Y, Yan K, Li Z, Zheng L, Lei J, Woolford JL Jr, Gao N.

Nat Struct Mol Biol. 2017 Mar;24(3):214-220. doi: 10.1038/nsmb.3364. Epub 2017 Jan 23.


Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast.

Konikkat S, Woolford JL Jr.

Biochem J. 2017 Jan 15;474(2):195-214. doi: 10.1042/BCJ20160516. Review.


Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit.

Liu Z, Gutierrez-Vargas C, Wei J, Grassucci RA, Ramesh M, Espina N, Sun M, Tutuncuoglu B, Madison-Antenucci S, Woolford JL Jr, Tong L, Frank J.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12174-12179. Epub 2016 Oct 10.


Atomic modeling of the ITS2 ribosome assembly subcomplex from cryo-EM together with mass spectrometry-identified protein-protein crosslinks.

Wu S, Tan D, Woolford JL Jr, Dong MQ, Gao N.

Protein Sci. 2017 Jan;26(1):103-112. doi: 10.1002/pro.3045. Epub 2016 Oct 13.


The N-terminal extension of yeast ribosomal protein L8 is involved in two major remodeling events during late nuclear stages of 60S ribosomal subunit assembly.

Tutuncuoglu B, Jakovljevic J, Wu S, Gao N, Woolford JL Jr.

RNA. 2016 Sep;22(9):1386-99. doi: 10.1261/rna.055798.115. Epub 2016 Jul 7.


Eukaryote-specific rRNA expansion segments function in ribosome biogenesis.

Ramesh M, Woolford JL Jr.

RNA. 2016 Aug;22(8):1153-62. doi: 10.1261/rna.056705.116. Epub 2016 Jun 17.


Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes.

Wu S, Tutuncuoglu B, Yan K, Brown H, Zhang Y, Tan D, Gamalinda M, Yuan Y, Li Z, Jakovljevic J, Ma C, Lei J, Dong MQ, Woolford JL Jr, Gao N.

Nature. 2016 Jun 2;534(7605):133-7. doi: 10.1038/nature17942. Epub 2016 May 25.


Disruption of ribosome assembly in yeast blocks cotranscriptional pre-rRNA processing and affects the global hierarchy of ribosome biogenesis.

Talkish J, Biedka S, Jakovljevic J, Zhang J, Tang L, Strahler JR, Andrews PC, Maddock JR, Woolford JL Jr.

RNA. 2016 Jun;22(6):852-66. doi: 10.1261/rna.055780.115. Epub 2016 Apr 1.


Homologous PNA Hybridization to Noncanonical DNA G-Quadruplexes.

Kormuth KA, Woolford JL Jr, Armitage BA.

Biochemistry. 2016 Mar 29;55(12):1749-57. doi: 10.1021/acs.biochem.6b00026. Epub 2016 Mar 16.


Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Gamalinda M, Woolford JL Jr.

Translation (Austin). 2015 Feb 2;3(1):e975018. doi: 10.4161/21690731.2014.975018. eCollection 2015 Jan-Jun. Review.


Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.

de la Cruz J, Karbstein K, Woolford JL Jr.

Annu Rev Biochem. 2015;84:93-129. doi: 10.1146/annurev-biochem-060614-033917. Epub 2015 Feb 20. Review.


Deletion of L4 domains reveals insights into the importance of ribosomal protein extensions in eukaryotic ribosome assembly.

Gamalinda M, Woolford JL Jr.

RNA. 2014 Nov;20(11):1725-31. doi: 10.1261/rna.046649.114. Epub 2014 Sep 22.


Mod-seq: high-throughput sequencing for chemical probing of RNA structure.

Talkish J, May G, Lin Y, Woolford JL Jr, McManus CJ.

RNA. 2014 May;20(5):713-20. doi: 10.1261/rna.042218.113. Epub 2014 Mar 24.


Ribosome assembly factors Pwp1 and Nop12 are important for folding of 5.8S rRNA during ribosome biogenesis in Saccharomyces cerevisiae.

Talkish J, Campbell IW, Sahasranaman A, Jakovljevic J, Woolford JL Jr.

Mol Cell Biol. 2014 May;34(10):1863-77. doi: 10.1128/MCB.01322-13. Epub 2014 Mar 17.


A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains.

Gamalinda M, Ohmayer U, Jakovljevic J, Kumcuoglu B, Woolford J, Mbom B, Lin L, Woolford JL Jr.

Genes Dev. 2014 Jan 15;28(2):198-210. doi: 10.1101/gad.228825.113.


Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Woolford JL Jr, Baserga SJ.

Genetics. 2013 Nov;195(3):643-81. doi: 10.1534/genetics.113.153197. Review.


Identification of the binding site of Rlp7 on assembling 60S ribosomal subunits in Saccharomyces cerevisiae.

Dembowski JA, Ramesh M, McManus CJ, Woolford JL Jr.

RNA. 2013 Dec;19(12):1639-47. doi: 10.1261/rna.041194.113. Epub 2013 Oct 15.


Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits.

Dembowski JA, Kuo B, Woolford JL Jr.

Nucleic Acids Res. 2013 Sep;41(16):7889-904. doi: 10.1093/nar/gkt545. Epub 2013 Jun 20.


Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing.

Gamalinda M, Jakovljevic J, Babiano R, Talkish J, de la Cruz J, Woolford JL Jr.

Nucleic Acids Res. 2013 Feb 1;41(3):1965-83. doi: 10.1093/nar/gks1272. Epub 2012 Dec 24.


Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits.

Jakovljevic J, Ohmayer U, Gamalinda M, Talkish J, Alexander L, Linnemann J, Milkereit P, Woolford JL Jr.

RNA. 2012 Oct;18(10):1805-22. doi: 10.1261/rna.032540.112. Epub 2012 Aug 14.


Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.

Talkish J, Zhang J, Jakovljevic J, Horsey EW, Woolford JL Jr.

Nucleic Acids Res. 2012 Sep 1;40(17):8646-61. Epub 2012 Jun 26.


Saccharomyces cerevisiae ribosomal protein L26 is not essential for ribosome assembly and function.

Babiano R, Gamalinda M, Woolford JL Jr, de la Cruz J.

Mol Cell Biol. 2012 Aug;32(16):3228-41. doi: 10.1128/MCB.00539-12. Epub 2012 Jun 11.


Ebp2 and Brx1 function cooperatively in 60S ribosomal subunit assembly in Saccharomyces cerevisiae.

Shimoji K, Jakovljevic J, Tsuchihashi K, Umeki Y, Wan K, Kawasaki S, Talkish J, Woolford JL Jr, Mizuta K.

Nucleic Acids Res. 2012 May;40(10):4574-88. doi: 10.1093/nar/gks057. Epub 2012 Feb 8.


Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.

Sahasranaman A, Dembowski J, Strahler J, Andrews P, Maddock J, Woolford JL Jr.

EMBO J. 2011 Sep 16;30(19):4020-32. doi: 10.1038/emboj.2011.338.


Kinesin molecular motor Eg5 functions during polypeptide synthesis.

Bartoli KM, Jakovljevic J, Woolford JL Jr, Saunders WS.

Mol Biol Cell. 2011 Sep;22(18):3420-30. doi: 10.1091/mbc.E11-03-0211. Epub 2011 Jul 27.


rRNA maturation in yeast cells depleted of large ribosomal subunit proteins.

Pöll G, Braun T, Jakovljevic J, Neueder A, Jakob S, Woolford JL Jr, Tschochner H, Milkereit P.

PLoS One. 2009 Dec 11;4(12):e8249. doi: 10.1371/journal.pone.0008249.


The Rea1 tadpole loses its tail.

Talkish J, Woolford JL Jr.

Cell. 2009 Sep 4;138(5):832-4. doi: 10.1016/j.cell.2009.08.019.


Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines.

Staley JP, Woolford JL Jr.

Curr Opin Cell Biol. 2009 Feb;21(1):109-18. doi: 10.1016/ Epub 2009 Jan 21. Review.


Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes.

Tang L, Sahasranaman A, Jakovljevic J, Schleifman E, Woolford JL Jr.

Mol Biol Cell. 2008 Jul;19(7):2844-56. doi: 10.1091/mbc.E07-12-1281. Epub 2008 Apr 30.


Identification of genes that function in the biogenesis and localization of small nucleolar RNAs in Saccharomyces cerevisiae.

Qiu H, Eifert J, Wacheul L, Thiry M, Berger AC, Jakovljevic J, Woolford JL Jr, Corbett AH, Lafontaine DL, Terns RM, Terns MP.

Mol Cell Biol. 2008 Jun;28(11):3686-99. doi: 10.1128/MCB.01115-07. Epub 2008 Mar 31.


Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.

Zhang J, Harnpicharnchai P, Jakovljevic J, Tang L, Guo Y, Oeffinger M, Rout MP, Hiley SL, Hughes T, Woolford JL Jr.

Genes Dev. 2007 Oct 15;21(20):2580-92.


Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomes.

Miles TD, Jakovljevic J, Horsey EW, Harnpicharnchai P, Tang L, Woolford JL Jr.

Mol Cell Biol. 2005 Dec;25(23):10419-32.


The carboxy-terminal extension of yeast ribosomal protein S14 is necessary for maturation of 43S preribosomes.

Jakovljevic J, de Mayolo PA, Miles TD, Nguyen TM, Léger-Silvestre I, Gas N, Woolford JL Jr.

Mol Cell. 2004 May 7;14(3):331-42.


Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation.

Horsey EW, Jakovljevic J, Miles TD, Harnpicharnchai P, Woolford JL Jr.

RNA. 2004 May;10(5):813-27.


Interactions of yeast ribosomal protein rpS14 with RNA.

Antúnez de Mayolo P, Woolford JL Jr.

J Mol Biol. 2003 Oct 31;333(4):697-709.


Saccharomyces cerevisiae nucleolar protein Nop7p is necessary for biogenesis of 60S ribosomal subunits.

Adams CC, Jakovljevic J, Roman J, Harnpicharnchai P, Woolford JL Jr.

RNA. 2002 Feb;8(2):150-65.


Composition and functional characterization of yeast 66S ribosome assembly intermediates.

Harnpicharnchai P, Jakovljevic J, Horsey E, Miles T, Roman J, Rout M, Meagher D, Imai B, Guo Y, Brame CJ, Shabanowitz J, Hunt DF, Woolford JL Jr.

Mol Cell. 2001 Sep;8(3):505-15.


Identification and characterization of human genes encoding Hprp3p and Hprp4p, interacting components of the spliceosome.

Wang A, Forman-Kay J, Luo Y, Luo M, Chow YH, Plumb J, Friesen JD, Tsui LC, Heng HH, Woolford JL Jr, Hu J.

Hum Mol Genet. 1997 Nov;6(12):2117-26.


Involvement of lysine 270 and lysine 271 of yeast 5S rRNA binding protein in RNA binding and ribosome assembly.

Yeh LC, Deshmukh M, Woolford JL, Lee JC.

Biochim Biophys Acta. 1996 Aug 14;1308(2):133-41.


The PRP31 gene encodes a novel protein required for pre-mRNA splicing in Saccharomyces cerevisiae.

Weidenhammer EM, Singh M, Ruiz-Noriega M, Woolford JL Jr.

Nucleic Acids Res. 1996 Mar 15;24(6):1164-70.


Six novel genes necessary for pre-mRNA splicing in Saccharomyces cerevisiae.

Maddock JR, Roy J, Woolford JL Jr.

Nucleic Acids Res. 1996 Mar 15;24(6):1037-44.

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