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Ribosome assembly coming into focus.

Klinge S, Woolford JL Jr.

Nat Rev Mol Cell Biol. 2019 Feb;20(2):116-131. doi: 10.1038/s41580-018-0078-y. Review.


Hierarchical recruitment of ribosomal proteins and assembly factors remodels nucleolar pre-60S ribosomes.

Biedka S, Micic J, Wilson D, Brown H, Diorio-Toth L, Woolford JL Jr.

J Cell Biol. 2018 Jul 2;217(7):2503-2518. doi: 10.1083/jcb.201711037. Epub 2018 Apr 24.


Insights into remodeling events during eukaryotic large ribosomal subunit assembly provided by high resolution cryo-EM structures.

Biedka S, Wu S, LaPeruta AJ, Gao N, Woolford JL Jr.

RNA Biol. 2017 Oct 3;14(10):1306-1313. doi: 10.1080/15476286.2017.1297914. Epub 2017 Mar 7. Review.


The assembly factor Erb1 functions in multiple remodeling events during 60S ribosomal subunit assembly in S. cerevisiae.

Konikkat S, Biedka S, Woolford JL Jr.

Nucleic Acids Res. 2017 May 5;45(8):4853-4865. doi: 10.1093/nar/gkw1361.


Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1.

Ma C, Wu S, Li N, Chen Y, Yan K, Li Z, Zheng L, Lei J, Woolford JL Jr, Gao N.

Nat Struct Mol Biol. 2017 Mar;24(3):214-220. doi: 10.1038/nsmb.3364. Epub 2017 Jan 23.


Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast.

Konikkat S, Woolford JL Jr.

Biochem J. 2017 Jan 15;474(2):195-214. doi: 10.1042/BCJ20160516. Review.


Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit.

Liu Z, Gutierrez-Vargas C, Wei J, Grassucci RA, Ramesh M, Espina N, Sun M, Tutuncuoglu B, Madison-Antenucci S, Woolford JL Jr, Tong L, Frank J.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12174-12179. Epub 2016 Oct 10.


Atomic modeling of the ITS2 ribosome assembly subcomplex from cryo-EM together with mass spectrometry-identified protein-protein crosslinks.

Wu S, Tan D, Woolford JL Jr, Dong MQ, Gao N.

Protein Sci. 2017 Jan;26(1):103-112. doi: 10.1002/pro.3045. Epub 2016 Oct 13.


The N-terminal extension of yeast ribosomal protein L8 is involved in two major remodeling events during late nuclear stages of 60S ribosomal subunit assembly.

Tutuncuoglu B, Jakovljevic J, Wu S, Gao N, Woolford JL Jr.

RNA. 2016 Sep;22(9):1386-99. doi: 10.1261/rna.055798.115. Epub 2016 Jul 7.


Interviews with children about their mental health problems: The congruence and validity of information that children report.

Macleod E, Woolford J, Hobbs L, Gross J, Hayne H, Patterson T.

Clin Child Psychol Psychiatry. 2017 Apr;22(2):229-244. doi: 10.1177/1359104516653642. Epub 2016 Jun 27.


Eukaryote-specific rRNA expansion segments function in ribosome biogenesis.

Ramesh M, Woolford JL Jr.

RNA. 2016 Aug;22(8):1153-62. doi: 10.1261/rna.056705.116. Epub 2016 Jun 17.


Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes.

Wu S, Tutuncuoglu B, Yan K, Brown H, Zhang Y, Tan D, Gamalinda M, Yuan Y, Li Z, Jakovljevic J, Ma C, Lei J, Dong MQ, Woolford JL Jr, Gao N.

Nature. 2016 Jun 2;534(7605):133-7. doi: 10.1038/nature17942. Epub 2016 May 25.


Disruption of ribosome assembly in yeast blocks cotranscriptional pre-rRNA processing and affects the global hierarchy of ribosome biogenesis.

Talkish J, Biedka S, Jakovljevic J, Zhang J, Tang L, Strahler JR, Andrews PC, Maddock JR, Woolford JL Jr.

RNA. 2016 Jun;22(6):852-66. doi: 10.1261/rna.055780.115. Epub 2016 Apr 1.


Homologous PNA Hybridization to Noncanonical DNA G-Quadruplexes.

Kormuth KA, Woolford JL Jr, Armitage BA.

Biochemistry. 2016 Mar 29;55(12):1749-57. doi: 10.1021/acs.biochem.6b00026. Epub 2016 Mar 16.


Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Gamalinda M, Woolford JL Jr.

Translation (Austin). 2015 Feb 2;3(1):e975018. doi: 10.4161/21690731.2014.975018. eCollection 2015 Jan-Jun. Review.


Maintained directional navigation across environments in the Morris water task is dependent on vestibular cues.

Clark BJ, Hong NS, Bettenson DJ, Woolford J, Horwood L, McDonald RJ.

J Exp Psychol Anim Learn Cogn. 2015 Jul;41(3):301-308. doi: 10.1037/xan0000066. Epub 2015 Jun 22.


You're the Flight Surgeon: epilepsy.

Woolford JS.

Aerosp Med Hum Perform. 2015 May;86(5):500-3. doi: 10.3357/AMHP.4235.2015.


Assembly of ribosomes in eukaryotes.

Woolford J.

RNA. 2015 Apr;21(4):766-8. doi: 10.1261/rna.050633.115. No abstract available.


Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.

de la Cruz J, Karbstein K, Woolford JL Jr.

Annu Rev Biochem. 2015;84:93-129. doi: 10.1146/annurev-biochem-060614-033917. Epub 2015 Feb 20. Review.


Deletion of L4 domains reveals insights into the importance of ribosomal protein extensions in eukaryotic ribosome assembly.

Gamalinda M, Woolford JL Jr.

RNA. 2014 Nov;20(11):1725-31. doi: 10.1261/rna.046649.114. Epub 2014 Sep 22.


Mod-seq: high-throughput sequencing for chemical probing of RNA structure.

Talkish J, May G, Lin Y, Woolford JL Jr, McManus CJ.

RNA. 2014 May;20(5):713-20. doi: 10.1261/rna.042218.113. Epub 2014 Mar 24.


Ribosome assembly factors Pwp1 and Nop12 are important for folding of 5.8S rRNA during ribosome biogenesis in Saccharomyces cerevisiae.

Talkish J, Campbell IW, Sahasranaman A, Jakovljevic J, Woolford JL Jr.

Mol Cell Biol. 2014 May;34(10):1863-77. doi: 10.1128/MCB.01322-13. Epub 2014 Mar 17.


A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains.

Gamalinda M, Ohmayer U, Jakovljevic J, Kumcuoglu B, Woolford J, Mbom B, Lin L, Woolford JL Jr.

Genes Dev. 2014 Jan 15;28(2):198-210. doi: 10.1101/gad.228825.113.


Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Woolford JL Jr, Baserga SJ.

Genetics. 2013 Nov;195(3):643-81. doi: 10.1534/genetics.113.153197. Review.


Identification of the binding site of Rlp7 on assembling 60S ribosomal subunits in Saccharomyces cerevisiae.

Dembowski JA, Ramesh M, McManus CJ, Woolford JL Jr.

RNA. 2013 Dec;19(12):1639-47. doi: 10.1261/rna.041194.113. Epub 2013 Oct 15.


Drawing helps children to talk about their presenting problems during a mental health assessment.

Woolford J, Patterson T, Macleod E, Hobbs L, Hayne H.

Clin Child Psychol Psychiatry. 2015 Jan;20(1):68-83. doi: 10.1177/1359104513496261. Epub 2013 Jul 31.


Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae.

Ohmayer U, Gamalinda M, Sauert M, Ossowski J, Pöll G, Linnemann J, Hierlmeier T, Perez-Fernandez J, Kumcuoglu B, Leger-Silvestre I, Faubladier M, Griesenbeck J, Woolford J, Tschochner H, Milkereit P.

PLoS One. 2013 Jul 10;8(7):e68412. doi: 10.1371/journal.pone.0068412. Print 2013.


Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits.

Dembowski JA, Kuo B, Woolford JL Jr.

Nucleic Acids Res. 2013 Sep;41(16):7889-904. doi: 10.1093/nar/gkt545. Epub 2013 Jun 20.


Confirming the existence of π-allyl-palladium intermediates during the reaction of meta photocycloadducts with palladium(II) compounds.

Penkett CS, Brann PJ, Woolford JA, Kahan RJ.

Chem Commun (Camb). 2013 Feb 4;49(11):1106-8. doi: 10.1039/c2cc37708j.


Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing.

Gamalinda M, Jakovljevic J, Babiano R, Talkish J, de la Cruz J, Woolford JL Jr.

Nucleic Acids Res. 2013 Feb 1;41(3):1965-83. doi: 10.1093/nar/gks1272. Epub 2012 Dec 24.


Investigating the photochemical properties of an arenyl dienol.

Penkett CS, Woolford JA.

Org Lett. 2012 Nov 16;14(22):5704-7. doi: 10.1021/ol302718p. Epub 2012 Nov 7.


Alcohol abuse or dependence in the military aviator: guidance for the non-flight surgeon.

Franzos MA, Franzos TL, Woolford JS, McDonald WA.

Mil Med. 2012 Oct;177(10):1191-5. Review.


Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits.

Jakovljevic J, Ohmayer U, Gamalinda M, Talkish J, Alexander L, Linnemann J, Milkereit P, Woolford JL Jr.

RNA. 2012 Oct;18(10):1805-22. doi: 10.1261/rna.032540.112. Epub 2012 Aug 14.


Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.

Talkish J, Zhang J, Jakovljevic J, Horsey EW, Woolford JL Jr.

Nucleic Acids Res. 2012 Sep 1;40(17):8646-61. Epub 2012 Jun 26.


Saccharomyces cerevisiae ribosomal protein L26 is not essential for ribosome assembly and function.

Babiano R, Gamalinda M, Woolford JL Jr, de la Cruz J.

Mol Cell Biol. 2012 Aug;32(16):3228-41. doi: 10.1128/MCB.00539-12. Epub 2012 Jun 11.


Ebp2 and Brx1 function cooperatively in 60S ribosomal subunit assembly in Saccharomyces cerevisiae.

Shimoji K, Jakovljevic J, Tsuchihashi K, Umeki Y, Wan K, Kawasaki S, Talkish J, Woolford JL Jr, Mizuta K.

Nucleic Acids Res. 2012 May;40(10):4574-88. doi: 10.1093/nar/gks057. Epub 2012 Feb 8.


Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.

Sahasranaman A, Dembowski J, Strahler J, Andrews P, Maddock J, Woolford JL Jr.

EMBO J. 2011 Sep 16;30(19):4020-32. doi: 10.1038/emboj.2011.338.


Kinesin molecular motor Eg5 functions during polypeptide synthesis.

Bartoli KM, Jakovljevic J, Woolford JL Jr, Saunders WS.

Mol Biol Cell. 2011 Sep;22(18):3420-30. doi: 10.1091/mbc.E11-03-0211. Epub 2011 Jul 27.


Investigating the arenyl-diene double [3 + 2] photocycloaddition reaction.

Penkett CS, Woolford JA, Read TW, Kahan RJ.

J Org Chem. 2011 Mar 4;76(5):1295-304. doi: 10.1021/jo101927a. Epub 2011 Feb 4.


rRNA maturation in yeast cells depleted of large ribosomal subunit proteins.

Pöll G, Braun T, Jakovljevic J, Neueder A, Jakob S, Woolford JL Jr, Tschochner H, Milkereit P.

PLoS One. 2009 Dec 11;4(12):e8249. doi: 10.1371/journal.pone.0008249.


The double [3 + 2] photocycloaddition reaction.

Penkett CS, Woolford JA, Day IJ, Coles MP.

J Am Chem Soc. 2010 Jan 13;132(1):4-5. doi: 10.1021/ja906163s.


Systemic inflammation and disease progression in Alzheimer disease.

Holmes C, Cunningham C, Zotova E, Woolford J, Dean C, Kerr S, Culliford D, Perry VH.

Neurology. 2009 Sep 8;73(10):768-74. doi: 10.1212/WNL.0b013e3181b6bb95.


The Rea1 tadpole loses its tail.

Talkish J, Woolford JL Jr.

Cell. 2009 Sep 4;138(5):832-4. doi: 10.1016/j.cell.2009.08.019.


Teach, then trust Elizabeth W. Jones (1939-2008): mentor to many.

Connelly TD, Lemmon SK, Mitchell AP, Woolford J Jr.

Genetics. 2009 Feb;181(2):357-65. doi: 10.1534/genetics.109.101360. No abstract available.


Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines.

Staley JP, Woolford JL Jr.

Curr Opin Cell Biol. 2009 Feb;21(1):109-18. doi: 10.1016/ Epub 2009 Jan 21. Review.


Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline.

Das PP, Bagijn MP, Goldstein LD, Woolford JR, Lehrbach NJ, Sapetschnig A, Buhecha HR, Gilchrist MJ, Howe KL, Stark R, Matthews N, Berezikov E, Ketting RF, Tavaré S, Miska EA.

Mol Cell. 2008 Jul 11;31(1):79-90. doi: 10.1016/j.molcel.2008.06.003. Epub 2008 Jun 19.


Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes.

Tang L, Sahasranaman A, Jakovljevic J, Schleifman E, Woolford JL Jr.

Mol Biol Cell. 2008 Jul;19(7):2844-56. doi: 10.1091/mbc.E07-12-1281. Epub 2008 Apr 30.


Identification of genes that function in the biogenesis and localization of small nucleolar RNAs in Saccharomyces cerevisiae.

Qiu H, Eifert J, Wacheul L, Thiry M, Berger AC, Jakovljevic J, Woolford JL Jr, Corbett AH, Lafontaine DL, Terns RM, Terns MP.

Mol Cell Biol. 2008 Jun;28(11):3686-99. doi: 10.1128/MCB.01115-07. Epub 2008 Mar 31.


Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.

Zhang J, Harnpicharnchai P, Jakovljevic J, Tang L, Guo Y, Oeffinger M, Rout MP, Hiley SL, Hughes T, Woolford JL Jr.

Genes Dev. 2007 Oct 15;21(20):2580-92.

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