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Items: 11

1.

MaizeGDB 2018: the maize multi-genome genetics and genomics database.

Portwood JL 2nd, Woodhouse MR, Cannon EK, Gardiner JM, Harper LC, Schaeffer ML, Walsh JR, Sen TZ, Cho KT, Schott DA, Braun BL, Dietze M, Dunfee B, Elsik CG, Manchanda N, Coe E, Sachs M, Stinard P, Tolbert J, Zimmerman S, Andorf CM.

Nucleic Acids Res. 2018 Nov 8. doi: 10.1093/nar/gky1046. [Epub ahead of print]

PMID:
30407532
2.

The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, K├Âllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.

PMID:
30061736
3.

Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa.

Cheng F, Sun C, Wu J, Schnable J, Woodhouse MR, Liang J, Cai C, Freeling M, Wang X.

New Phytol. 2016 Jul;211(1):288-99. doi: 10.1111/nph.13884. Epub 2016 Feb 12.

4.

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.

Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5283-8. doi: 10.1073/pnas.1402475111. Epub 2014 Mar 24. Erratum in: Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6527.

5.

Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants.

Freeling M, Woodhouse MR, Subramaniam S, Turco G, Lisch D, Schnable JC.

Curr Opin Plant Biol. 2012 Apr;15(2):131-9. doi: 10.1016/j.pbi.2012.01.015. Epub 2012 Feb 14. Review.

PMID:
22341793
6.

Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy.

Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC.

Genetics. 2012 Apr;190(4):1563-74. doi: 10.1534/genetics.111.137349. Epub 2012 Feb 2.

7.

Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids.

Woodhouse MR, Tang H, Freeling M.

Plant Cell. 2011 Dec;23(12):4241-53. doi: 10.1105/tpc.111.093567. Epub 2011 Dec 16.

8.

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

Woodhouse MR, Schnable JC, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M.

PLoS Biol. 2010 Jun 29;8(6):e1000409. doi: 10.1371/journal.pbio.1000409.

9.

Transposed genes in Arabidopsis are often associated with flanking repeats.

Woodhouse MR, Pedersen B, Freeling M.

PLoS Genet. 2010 May 13;6(5):e1000949. doi: 10.1371/journal.pgen.1000949.

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