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Items: 1 to 50 of 95

1.

Lentiviral-Mediated shRNA Approaches: Applications in Cellular Differentiation and Autophagy.

Orfali N, Jeyapalan JN, Woodcock CL, O'Donovan TR, Benjamin D, Cahill M, McKenna S, Gudas LJ, Mongan NP.

Methods Mol Biol. 2019;2019:33-49. doi: 10.1007/978-1-4939-9585-1_3.

PMID:
31359387
2.

Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.

Grigoryev SA, Bascom G, Buckwalter JM, Schubert MB, Woodcock CL, Schlick T.

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1238-43. doi: 10.1073/pnas.1518280113. Epub 2016 Jan 19.

3.

Sumoylated human histone H4 prevents chromatin compaction by inhibiting long-range internucleosomal interactions.

Dhall A, Wei S, Fierz B, Woodcock CL, Lee TH, Chatterjee C.

J Biol Chem. 2014 Dec 5;289(49):33827-37. doi: 10.1074/jbc.M114.591644. Epub 2014 Oct 6.

4.

Comparative structure of vertebrate sperm chromatin.

Ausió J, González-Romero R, Woodcock CL.

J Struct Biol. 2014 Nov;188(2):142-55. doi: 10.1016/j.jsb.2014.09.004. Epub 2014 Sep 27.

PMID:
25264147
5.

Human heterochromatin protein 1α promotes nucleosome associations that drive chromatin condensation.

Azzaz AM, Vitalini MW, Thomas AS, Price JP, Blacketer MJ, Cryderman DE, Zirbel LN, Woodcock CL, Elcock AH, Wallrath LL, Shogren-Knaak MA.

J Biol Chem. 2014 Mar 7;289(10):6850-61. doi: 10.1074/jbc.M113.512137. Epub 2014 Jan 10.

6.

Nucleosome-free region dominates histone acetylation in targeting SWR1 to promoters for H2A.Z replacement.

Ranjan A, Mizuguchi G, FitzGerald PC, Wei D, Wang F, Huang Y, Luk E, Woodcock CL, Wu C.

Cell. 2013 Sep 12;154(6):1232-45. doi: 10.1016/j.cell.2013.08.005.

7.

Chromatin organization - the 30 nm fiber.

Grigoryev SA, Woodcock CL.

Exp Cell Res. 2012 Jul 15;318(12):1448-55. doi: 10.1016/j.yexcr.2012.02.014. Epub 2012 Feb 24. Review.

PMID:
22394510
8.

Replacement of histone H3 with CENP-A directs global nucleosome array condensation and loosening of nucleosome superhelical termini.

Panchenko T, Sorensen TC, Woodcock CL, Kan ZY, Wood S, Resch MG, Luger K, Englander SW, Hansen JC, Black BE.

Proc Natl Acad Sci U S A. 2011 Oct 4;108(40):16588-93. doi: 10.1073/pnas.1113621108. Epub 2011 Sep 26.

9.

Binding of the Rett syndrome protein, MeCP2, to methylated and unmethylated DNA and chromatin.

Hansen JC, Ghosh RP, Woodcock CL.

IUBMB Life. 2010 Oct;62(10):732-8. doi: 10.1002/iub.386. Review.

10.

MeCP2 binds cooperatively to its substrate and competes with histone H1 for chromatin binding sites.

Ghosh RP, Horowitz-Scherer RA, Nikitina T, Shlyakhtenko LS, Woodcock CL.

Mol Cell Biol. 2010 Oct;30(19):4656-70. doi: 10.1128/MCB.00379-10. Epub 2010 Aug 2.

11.

Chromatin higher-order structure and dynamics.

Woodcock CL, Ghosh RP.

Cold Spring Harb Perspect Biol. 2010 May;2(5):a000596. doi: 10.1101/cshperspect.a000596. Epub 2010 Apr 7. Review.

12.

Unique physical properties and interactions of the domains of methylated DNA binding protein 2.

Ghosh RP, Nikitina T, Horowitz-Scherer RA, Gierasch LM, Uversky VN, Hite K, Hansen JC, Woodcock CL.

Biochemistry. 2010 May 25;49(20):4395-410. doi: 10.1021/bi9019753.

13.

A histone-fold complex and FANCM form a conserved DNA-remodeling complex to maintain genome stability.

Yan Z, Delannoy M, Ling C, Daee D, Osman F, Muniandy PA, Shen X, Oostra AB, Du H, Steltenpool J, Lin T, Schuster B, Décaillet C, Stasiak A, Stasiak AZ, Stone S, Hoatlin ME, Schindler D, Woodcock CL, Joenje H, Sen R, de Winter JP, Li L, Seidman MM, Whitby MC, Myung K, Constantinou A, Wang W.

Mol Cell. 2010 Mar 26;37(6):865-78. doi: 10.1016/j.molcel.2010.01.039.

14.

Reconstitution of heterochromatin-dependent transcriptional gene silencing.

Johnson A, Li G, Sikorski TW, Buratowski S, Woodcock CL, Moazed D.

Mol Cell. 2009 Sep 24;35(6):769-81. doi: 10.1016/j.molcel.2009.07.030.

15.

Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions.

Grigoryev SA, Arya G, Correll S, Woodcock CL, Schlick T.

Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13317-22. doi: 10.1073/pnas.0903280106. Epub 2009 Jul 27.

16.

Role of nucleic acid binding in Sir3p-dependent interactions with chromatin fibers.

Adkins NL, McBryant SJ, Johnson CN, Leidy JM, Woodcock CL, Robert CH, Hansen JC, Georgel PT.

Biochemistry. 2009 Jan 20;48(2):276-88. doi: 10.1021/bi801705g.

PMID:
19099415
17.

Ezh1 and Ezh2 maintain repressive chromatin through different mechanisms.

Margueron R, Li G, Sarma K, Blais A, Zavadil J, Woodcock CL, Dynlacht BD, Reinberg D.

Mol Cell. 2008 Nov 21;32(4):503-18. doi: 10.1016/j.molcel.2008.11.004.

18.

Architecture of the SWI/SNF-nucleosome complex.

Dechassa ML, Zhang B, Horowitz-Scherer R, Persinger J, Woodcock CL, Peterson CL, Bartholomew B.

Mol Cell Biol. 2008 Oct;28(19):6010-21. doi: 10.1128/MCB.00693-08. Epub 2008 Jul 21.

19.

Rett syndrome-causing mutations in human MeCP2 result in diverse structural changes that impact folding and DNA interactions.

Ghosh RP, Horowitz-Scherer RA, Nikitina T, Gierasch LM, Woodcock CL.

J Biol Chem. 2008 Jul 18;283(29):20523-34. doi: 10.1074/jbc.M803021200. Epub 2008 May 22.

20.

The silent information regulator 3 protein, SIR3p, binds to chromatin fibers and assembles a hypercondensed chromatin architecture in the presence of salt.

McBryant SJ, Krause C, Woodcock CL, Hansen JC.

Mol Cell Biol. 2008 Jun;28(11):3563-72. doi: 10.1128/MCB.01389-07. Epub 2008 Mar 24.

21.

MeCP2-chromatin interactions include the formation of chromatosome-like structures and are altered in mutations causing Rett syndrome.

Nikitina T, Ghosh RP, Horowitz-Scherer RA, Hansen JC, Grigoryev SA, Woodcock CL.

J Biol Chem. 2007 Sep 21;282(38):28237-45. Epub 2007 Jul 27.

22.

Intrinsic disorder and autonomous domain function in the multifunctional nuclear protein, MeCP2.

Adams VH, McBryant SJ, Wade PA, Woodcock CL, Hansen JC.

J Biol Chem. 2007 May 18;282(20):15057-64. Epub 2007 Mar 19.

23.

Multiple modes of interaction between the methylated DNA binding protein MeCP2 and chromatin.

Nikitina T, Shi X, Ghosh RP, Horowitz-Scherer RA, Hansen JC, Woodcock CL.

Mol Cell Biol. 2007 Feb;27(3):864-77. Epub 2006 Nov 13.

24.

Chromatin architecture.

Woodcock CL.

Curr Opin Struct Biol. 2006 Apr;16(2):213-20. Epub 2006 Mar 15. Review.

PMID:
16540311
25.

Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length.

Woodcock CL, Skoultchi AI, Fan Y.

Chromosome Res. 2006;14(1):17-25. Review.

PMID:
16506093
26.

Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation.

Fan Y, Nikitina T, Zhao J, Fleury TJ, Bhattacharyya R, Bouhassira EE, Stein A, Woodcock CL, Skoultchi AI.

Cell. 2005 Dec 29;123(7):1199-212.

27.

Organization of interphase chromatin.

Horowitz-Scherer RA, Woodcock CL.

Chromosoma. 2006 Feb;115(1):1-14. Epub 2005 Dec 17. Review.

PMID:
16362820
28.

A milestone in the odyssey of higher-order chromatin structure.

Woodcock CL.

Nat Struct Mol Biol. 2005 Aug;12(8):639-40. No abstract available.

PMID:
16077725
29.

Chromatin compaction by a polycomb group protein complex.

Francis NJ, Kingston RE, Woodcock CL.

Science. 2004 Nov 26;306(5701):1574-7.

30.
31.

Closed chromatin loops at the ends of chromosomes.

Nikitina T, Woodcock CL.

J Cell Biol. 2004 Jul 19;166(2):161-5. Epub 2004 Jul 12.

32.

Visualization and 3D structure determination of defined sequence chromatin and chromatin remodeling complexes.

Horowitz-Scherer RA, Woodcock CL.

Methods Enzymol. 2004;376:29-48. Review. No abstract available.

PMID:
14975297
33.

Role of the M-loop and reactive center loop domains in the folding and bridging of nucleosome arrays by MENT.

Springhetti EM, Istomina NE, Whisstock JC, Nikitina T, Woodcock CL, Grigoryev SA.

J Biol Chem. 2003 Oct 31;278(44):43384-93. Epub 2003 Aug 19.

34.

H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo.

Fan Y, Nikitina T, Morin-Kensicki EM, Zhao J, Magnuson TR, Woodcock CL, Skoultchi AI.

Mol Cell Biol. 2003 Jul;23(13):4559-72.

35.

Chromatin compaction by human MeCP2. Assembly of novel secondary chromatin structures in the absence of DNA methylation.

Georgel PT, Horowitz-Scherer RA, Adkins N, Woodcock CL, Wade PA, Hansen JC.

J Biol Chem. 2003 Aug 22;278(34):32181-8. Epub 2003 Jun 4.

36.

Structural analysis of the yeast SWI/SNF chromatin remodeling complex.

Smith CL, Horowitz-Scherer R, Flanagan JF, Woodcock CL, Peterson CL.

Nat Struct Biol. 2003 Feb;10(2):141-5.

PMID:
12524530
37.

Higher-order structure of chromatin and chromosomes.

Woodcock CL, Dimitrov S.

Curr Opin Genet Dev. 2001 Apr;11(2):130-5. Review.

PMID:
11250134
38.

The nature of the nucleosomal barrier to transcription: direct observation of paused intermediates by electron cryomicroscopy.

Bednar J, Studitsky VM, Grigoryev SA, Felsenfeld G, Woodcock CL.

Mol Cell. 1999 Sep;4(3):377-86.

39.

Cryoelectron microscopic analysis of nucleosomes and chromatin.

Bednar J, Woodcock CL.

Methods Enzymol. 1999;304:191-213. No abstract available.

PMID:
10372361
40.

MENT, a heterochromatin protein that mediates higher order chromatin folding, is a new serpin family member.

Grigoryev SA, Bednar J, Woodcock CL.

J Biol Chem. 1999 Feb 26;274(9):5626-36.

41.

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin.

Bednar J, Horowitz RA, Grigoryev SA, Carruthers LM, Hansen JC, Koster AJ, Woodcock CL.

Proc Natl Acad Sci U S A. 1998 Nov 24;95(24):14173-8.

42.
44.
45.

Electron microscopic imaging of chromatin with nucleosome resolution.

Woodcock CL, Horowitz RA.

Methods Cell Biol. 1998;53:167-86. Review. No abstract available.

PMID:
9348509
46.

Electron microscopy of chromatin.

Woodcock CL, Horowitz RA.

Methods. 1997 May;12(1):84-95.

PMID:
9169198
47.

Nucleosome positioning properties of the albumin transcriptional enhancer.

McPherson CE, Horowitz R, Woodcock CL, Jiang C, Zaret KS.

Nucleic Acids Res. 1996 Feb 1;24(3):397-404.

48.

Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopy.

Bednar J, Horowitz RA, Dubochet J, Woodcock CL.

J Cell Biol. 1995 Dec;131(6 Pt 1):1365-76.

49.

Chromatin organization re-viewed.

Woodcock CL, Horowitz RA.

Trends Cell Biol. 1995 Jul;5(7):272-7.

PMID:
14732111

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