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neoepiscope improves neoepitope prediction with multi-variant phasing.

Wood MA, Nguyen A, Struck A, Ellrott K, Nellore A, Thompson RF.

Bioinformatics. 2019 Aug 19. pii: btz653. doi: 10.1093/bioinformatics/btz653. [Epub ahead of print]


Examining the contribution of histone modification to sex differences in learning and memory.

Keiser AA, Wood MA.

Learn Mem. 2019 Aug 15;26(9):318-331. doi: 10.1101/lm.048850.118. Print 2019 Sep.


New Concerns for Neurocognitive Function during Deep Space Exposures to Chronic, Low Dose-Rate, Neutron Radiation.

Acharya MM, Baulch JE, Klein PM, Baddour AAD, Apodaca LA, Kramár EA, Alikhani L, Garcia C Jr, Angulo MC, Batra RS, Fallgren CM, Borak TB, Stark CEL, Wood MA, Britten RA, Soltesz I, Limoli CL.

eNeuro. 2019 Aug 22;6(4). pii: ENEURO.0094-19.2019. doi: 10.1523/ENEURO.0094-19.2019. Print 2019 Jul/Aug.


Innovative approaches in cognitive aging.

Austad SN, Wood MA, Villeda SA, Voss JL, Sahay A, Albert M.

Neurobiol Aging. 2019 Apr 30. pii: S0197-4580(19)30127-7. doi: 10.1016/j.neurobiolaging.2019.04.013. [Epub ahead of print]


PP4-dependent HDAC3 dephosphorylation discriminates between axonal regeneration and regenerative failure.

Hervera A, Zhou L, Palmisano I, McLachlan E, Kong G, Hutson TH, Danzi MC, Lemmon VP, Bixby JL, Matamoros-Angles A, Forsberg K, De Virgiliis F, Matheos DP, Kwapis J, Wood MA, Puttagunta R, Del Río JA, Di Giovanni S.

EMBO J. 2019 Jul 1;38(13):e101032. doi: 10.15252/embj.2018101032. Epub 2019 May 22.


Aging mice show impaired memory updating in the novel OUL updating paradigm.

Kwapis JL, Alaghband Y, Keiser AA, Dong TN, Michael CM, Rhee D, Shu G, Dang RT, Matheos DP, Wood MA.

Neuropsychopharmacology. 2019 Jun 15. doi: 10.1038/s41386-019-0438-0. [Epub ahead of print]


PP4-dependent HDAC3 dephosphorylation discriminates between axonal regeneration and regenerative failure.

Hervera A, Zhou L, Palmisano I, McLachlan E, Kong G, Hutson TH, Danzi MC, Lemmon VP, Bixby JL, Matamoros-Angles A, Forsberg K, De Virgiliis F, Matheos DP, Kwapis J, Wood MA, Puttagunta R, Del Río JA, Di Giovanni S.

EMBO J. 2019 May 22. pii: e101032. doi: 10.15252/embj.2018101032. [Epub ahead of print]


Nicotine excites VIP interneurons to disinhibit pyramidal neurons in auditory cortex.

Askew CE, Lopez AJ, Wood MA, Metherate R.

Synapse. 2019 Sep;73(9):e22116. doi: 10.1002/syn.22116. Epub 2019 May 17.


HDAC3-Mediated Repression of the Nr4a Family Contributes to Age-Related Impairments in Long-Term Memory.

Kwapis JL, Alaghband Y, López AJ, Long JM, Li X, Shu G, Bodinayake KK, Matheos DP, Rapp PR, Wood MA.

J Neurosci. 2019 Jun 19;39(25):4999-5009. doi: 10.1523/JNEUROSCI.2799-18.2019. Epub 2019 Apr 18.


Epigenetic regulation of immediate-early gene Nr4a2/Nurr1 in the medial habenula during reinstatement of cocaine-associated behavior.

López AJ, Hemstedt TJ, Jia Y, Hwang PH, Campbell RR, Kwapis JL, White AO, Chitnis O, Scarfone VM, Matheos DP, Lynch G, Wood MA.

Neuropharmacology. 2019 Jul 15;153:13-19. doi: 10.1016/j.neuropharm.2019.04.016. Epub 2019 Apr 15.


How the epigenome integrates information and reshapes the synapse.

Campbell RR, Wood MA.

Nat Rev Neurosci. 2019 Mar;20(3):133-147. doi: 10.1038/s41583-019-0121-9. Review.


The role of prediction error and memory destabilization in extinction of cued-fear within the reconsolidation window.

Cahill EN, Wood MA, Everitt BJ, Milton AL.

Neuropsychopharmacology. 2019 Sep;44(10):1762-1768. doi: 10.1038/s41386-018-0299-y. Epub 2018 Dec 20.


Extinction Versus Epigenetic Intergenerational Inheritance: Who Wins?

Matheos DP, Wood MA.

Biol Psychiatry. 2019 Feb 1;85(3):184-186. doi: 10.1016/j.biopsych.2018.11.016. No abstract available.


Using User-Feedback to Develop a Website: MyT1DHope, for Parents of Children with T1D.

Holtz BE, Mitchell KM, Nuttall AK, Cotten SR, Hershey DD, Dunneback JK, Wood MA.

Health Commun. 2018 Dec 28:1-8. doi: 10.1080/10410236.2018.1560579. [Epub ahead of print]


Safety Evaluation of the MiniMed 670G System in Children 7-13 Years of Age with Type 1 Diabetes.

Forlenza GP, Pinhas-Hamiel O, Liljenquist DR, Shulman DI, Bailey TS, Bode BW, Wood MA, Buckingham BA, Kaiserman KB, Shin J, Huang S, Lee SW, Kaufman FR.

Diabetes Technol Ther. 2019 Jan;21(1):11-19. doi: 10.1089/dia.2018.0264. Epub 2018 Dec 26.


Effects of a histone deacetylase 3 inhibitor on extinction and reinstatement of cocaine self-administration in rats.

Hitchcock LN, Raybuck JD, Wood MA, Lattal KM.

Psychopharmacology (Berl). 2019 Jan;236(1):517-529. doi: 10.1007/s00213-018-5122-2. Epub 2018 Nov 28.


Overcoming the Challenging Cervix: Identification and Techniques to Access the Uterine Cavity.

Wood MA, Kerrigan KL, Burns MK, Glenn TL, Ludwin A, Christianson MS, Bhagavath B, Lindheim SR.

Obstet Gynecol Surv. 2018 Nov;73(11):641-649. doi: 10.1097/OGX.0000000000000614. Review.


Using an mHealth App to Transition Care of Type 1 Diabetes from Parents to Teens: Protocol for a Pilot Study.

Holtz BE, Mitchell KM, Hershey DD, Cotten SR, Holmstrom AJ, Richman J, Dunneback JK, Wood MA.

JMIR Res Protoc. 2018 Oct 30;7(10):e10803. doi: 10.2196/10803.


In-Clinic Evaluation of the MiniMed 670G System "Suspend Before Low" Feature in Children with Type 1 Diabetes.

Wood MA, Shulman DI, Forlenza GP, Bode BW, Pinhas-Hamiel O, Buckingham BA, Kaiserman KB, Liljenquist DR, Bailey TS, Shin J, Huang S, Chen X, Cordero TL, Lee SW, Kaufman FR.

Diabetes Technol Ther. 2018 Nov;20(11):731-737. doi: 10.1089/dia.2018.0209. Epub 2018 Oct 6.


Replacement of microglia in the aged brain reverses cognitive, synaptic, and neuronal deficits in mice.

Elmore MRP, Hohsfield LA, Kramár EA, Soreq L, Lee RJ, Pham ST, Najafi AR, Spangenberg EE, Wood MA, West BL, Green KN.

Aging Cell. 2018 Dec;17(6):e12832. doi: 10.1111/acel.12832. Epub 2018 Oct 2.


CREST in the Nucleus Accumbens Core Regulates Cocaine Conditioned Place Preference, Cocaine-Seeking Behavior, and Synaptic Plasticity.

Alaghband Y, Kramár E, Kwapis JL, Kim ES, Hemstedt TJ, López AJ, White AO, Al-Kachak A, Aimiuwu OV, Bodinayake KK, Oparaugo NC, Han J, Lattal KM, Wood MA.

J Neurosci. 2018 Oct 31;38(44):9514-9526. doi: 10.1523/JNEUROSCI.2911-17.2018. Epub 2018 Sep 18.


Epigenetic regulation of the circadian gene Per1 contributes to age-related changes in hippocampal memory.

Kwapis JL, Alaghband Y, Kramár EA, López AJ, Vogel Ciernia A, White AO, Shu G, Rhee D, Michael CM, Montellier E, Liu Y, Magnan CN, Chen S, Sassone-Corsi P, Baldi P, Matheos DP, Wood MA.

Nat Commun. 2018 Aug 20;9(1):3323. doi: 10.1038/s41467-018-05868-0.


Extending the accuracy of the SNAP interatomic potential form.

Wood MA, Thompson AP.

J Chem Phys. 2018 Jun 28;148(24):241721. doi: 10.1063/1.5017641.


Population-level distribution and putative immunogenicity of cancer neoepitopes.

Wood MA, Paralkar M, Paralkar MP, Nguyen A, Struck AJ, Ellrott K, Margolin A, Nellore A, Thompson RF.

BMC Cancer. 2018 Apr 13;18(1):414. doi: 10.1186/s12885-018-4325-6.


Pediatric endocrine society survey of diabetes practices in the United States: What is the current state?

Guttmann-Bauman I, Thornton P, Adhikari S, Reifschneider K, Wood MA, Hamby T, Rubin K.

Pediatr Diabetes. 2018 Aug;19(5):859-865. doi: 10.1111/pedi.12677. Epub 2018 Apr 14.


Habits Are Negatively Regulated by Histone Deacetylase 3 in the Dorsal Striatum.

Malvaez M, Greenfield VY, Matheos DP, Angelillis NA, Murphy MD, Kennedy PJ, Wood MA, Wassum KM.

Biol Psychiatry. 2018 Sep 1;84(5):383-392. doi: 10.1016/j.biopsych.2018.01.025. Epub 2018 Feb 8.


Deleting HDAC3 rescues long-term memory impairments induced by disruption of the neuron-specific chromatin remodeling subunit BAF53b.

Shu G, Kramár EA, López AJ, Huynh G, Wood MA, Kwapis JL.

Learn Mem. 2018 Feb 15;25(3):109-114. doi: 10.1101/lm.046920.117. Print 2018 Mar.


Medial habenula cholinergic signaling regulates cocaine-associated relapse-like behavior.

López AJ, Jia Y, White AO, Kwapis JL, Espinoza M, Hwang P, Campbell R, Alaghband Y, Chitnis O, Matheos DP, Lynch G, Wood MA.

Addict Biol. 2019 May;24(3):403-413. doi: 10.1111/adb.12605. Epub 2018 Feb 12.


The design and development of MyT1DHero: A mobile app for adolescents with type 1 diabetes and their parents.

Holtz BE, Murray KM, Hershey DD, Richman J, Dunneback JK, Vyas A, Wood MA.

J Telemed Telecare. 2019 Apr;25(3):172-180. doi: 10.1177/1357633X17745470. Epub 2017 Dec 11.


Distinct roles for the deacetylase domain of HDAC3 in the hippocampus and medial prefrontal cortex in the formation and extinction of memory.

Alaghband Y, Kwapis JL, López AJ, White AO, Aimiuwu OV, Al-Kachak A, Bodinayake KK, Oparaugo NC, Dang R, Astarabadi M, Matheos DP, Wood MA.

Neurobiol Learn Mem. 2017 Nov;145:94-104. doi: 10.1016/j.nlm.2017.09.001. Epub 2017 Sep 8.


Developing a Patient-Centered mHealth App: A Tool for Adolescents With Type 1 Diabetes and Their Parents.

Holtz BE, Murray KM, Hershey DD, Dunneback JK, Cotten SR, Holmstrom AJ, Vyas A, Kaiser MK, Wood MA.

JMIR Mhealth Uhealth. 2017 Apr 19;5(4):e53. doi: 10.2196/mhealth.6654.


Mutation of neuron-specific chromatin remodeling subunit BAF53b: rescue of plasticity and memory by manipulating actin remodeling.

Vogel Ciernia A, Kramár EA, Matheos DP, Havekes R, Hemstedt TJ, Magnan CN, Sakata K, Tran A, Azzawi S, Lopez A, Dang R, Wang W, Trieu B, Tong J, Barrett RM, Post RJ, Baldi P, Abel T, Lynch G, Wood MA.

Learn Mem. 2017 Apr 17;24(5):199-209. doi: 10.1101/lm.044602.116. Print 2017 May.


Reconsolidation and extinction: Using epigenetic signatures to challenge conventional wisdom.

Hemstedt TJ, Lattal KM, Wood MA.

Neurobiol Learn Mem. 2017 Jul;142(Pt A):55-65. doi: 10.1016/j.nlm.2017.01.007. Epub 2017 Jan 21. Review.


Context and Auditory Fear are Differentially Regulated by HDAC3 Activity in the Lateral and Basal Subnuclei of the Amygdala.

Kwapis JL, Alaghband Y, López AJ, White AO, Campbell RR, Dang RT, Rhee D, Tran AV, Carl AE, Matheos DP, Wood MA.

Neuropsychopharmacology. 2017 May;42(6):1284-1294. doi: 10.1038/npp.2016.274. Epub 2016 Dec 7.


Impaired function of α2-containing nicotinic acetylcholine receptors on oriens-lacunosum moleculare cells causes hippocampus-dependent memory impairments.

Kleeman E, Nakauchi S, Su H, Dang R, Wood MA, Sumikawa K.

Neurobiol Learn Mem. 2016 Dec;136:13-20. doi: 10.1016/j.nlm.2016.09.010. Epub 2016 Sep 19.


Longitudinal assessment of neuronal 3D genomes in mouse prefrontal cortex.

Mitchell AC, Javidfar B, Bicks LK, Neve R, Garbett K, Lander SS, Mirnics K, Morishita H, Wood MA, Jiang Y, Gaisler-Salomon I, Akbarian S.

Nat Commun. 2016 Sep 6;7:12743. doi: 10.1038/ncomms12743.


Erythropoietin increases macrophage-mediated T cell suppression.

Wood MA, Goldman N, DePierri K, Somerville J, Riggs JE.

Cell Immunol. 2016 Aug-Sep;306-307:17-24. doi: 10.1016/j.cellimm.2016.05.004. Epub 2016 May 27.


BDNF rescues BAF53b-dependent synaptic plasticity and cocaine-associated memory in the nucleus accumbens.

White AO, Kramár EA, López AJ, Kwapis JL, Doan J, Saldana D, Davatolhagh MF, Alaghband Y, Blurton-Jones M, Matheos DP, Wood MA.

Nat Commun. 2016 May 26;7:11725. doi: 10.1038/ncomms11725.


Promoter-Specific Effects of DREADD Modulation on Hippocampal Synaptic Plasticity and Memory Formation.

López AJ, Kramár E, Matheos DP, White AO, Kwapis J, Vogel-Ciernia A, Sakata K, Espinoza M, Wood MA.

J Neurosci. 2016 Mar 23;36(12):3588-99. doi: 10.1523/JNEUROSCI.3682-15.2016.


The role of active DNA demethylation and Tet enzyme function in memory formation and cocaine action.

Alaghband Y, Bredy TW, Wood MA.

Neurosci Lett. 2016 Jun 20;625:40-6. doi: 10.1016/j.neulet.2016.01.023. Epub 2016 Jan 19. Review.


Friendship Security, But Not Friendship Intimacy, Moderates the Stability of Anxiety During Preadolescence.

Wood MA, Bukowski WM, Santo JB.

J Clin Child Adolesc Psychol. 2017 Nov-Dec;46(6):798-809. doi: 10.1080/15374416.2015.1094742. Epub 2015 Dec 16.


Computation of the Density Matrix in Electronic Structure Theory in Parallel on Multiple Graphics Processing Units.

Cawkwell MJ, Wood MA, Niklasson AM, Mniszewski SM.

J Chem Theory Comput. 2014 Dec 9;10(12):5391-6. doi: 10.1021/ct5008229.


Histone Deacetylase Inhibition via RGFP966 Releases the Brakes on Sensory Cortical Plasticity and the Specificity of Memory Formation.

Bieszczad KM, Bechay K, Rusche JR, Jacques V, Kudugunti S, Miao W, Weinberger NM, McGaugh JL, Wood MA.

J Neurosci. 2015 Sep 23;35(38):13124-32. doi: 10.1523/JNEUROSCI.0914-15.2015.


Psychiatrists' Perceptions of World of Warcraft and Other MMORPGs.

Lis E, Chiniara C, Wood MA, Biskin R, Montoro R.

Psychiatr Q. 2016 Jun;87(2):323-7. doi: 10.1007/s11126-015-9390-2.


How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.

Peixoto L, Risso D, Poplawski SG, Wimmer ME, Speed TP, Wood MA, Abel T.

Nucleic Acids Res. 2015 Sep 18;43(16):7664-74. doi: 10.1093/nar/gkv736. Epub 2015 Jul 21.


Role of nucleosome remodeling in neurodevelopmental and intellectual disability disorders.

López AJ, Wood MA.

Front Behav Neurosci. 2015 Apr 23;9:100. doi: 10.3389/fnbeh.2015.00100. eCollection 2015. Review.


Psychiatrists' Perceptions of Facebook and Other Social Media.

Lis E, Wood MA, Chiniara C, Biskin R, Montoro R.

Psychiatr Q. 2015 Dec;86(4):597-602. doi: 10.1007/s11126-015-9358-2.


Early postnatal nicotine exposure causes hippocampus-dependent memory impairments in adolescent mice: Association with altered nicotinic cholinergic modulation of LTP, but not impaired LTP.

Nakauchi S, Malvaez M, Su H, Kleeman E, Dang R, Wood MA, Sumikawa K.

Neurobiol Learn Mem. 2015 Feb;118:178-88. doi: 10.1016/j.nlm.2014.12.007. Epub 2014 Dec 27.


Conserved higher-order chromatin regulates NMDA receptor gene expression and cognition.

Bharadwaj R, Peter CJ, Jiang Y, Roussos P, Vogel-Ciernia A, Shen EY, Mitchell AC, Mao W, Whittle C, Dincer A, Jakovcevski M, Pothula V, Rasmussen TP, Giakoumaki SG, Bitsios P, Sherif A, Gardner PD, Ernst P, Ghose S, Sklar P, Haroutunian V, Tamminga C, Myers RH, Futai K, Wood MA, Akbarian S.

Neuron. 2014 Dec 3;84(5):997-1008. doi: 10.1016/j.neuron.2014.10.032. Epub 2014 Nov 13.


Examining object location and object recognition memory in mice.

Vogel-Ciernia A, Wood MA.

Curr Protoc Neurosci. 2014 Oct 8;69:8.31.1-17. doi: 10.1002/0471142301.ns0831s69.

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