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Items: 1 to 50 of 83

1.

Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition.

Ouyang W, Winsnes CF, Hjelmare M, Cesnik AJ, Åkesson L, Xu H, Sullivan DP, Dai S, Lan J, Jinmo P, Galib SM, Henkel C, Hwang K, Poplavskiy D, Tunguz B, Wolfinger RD, Gu Y, Li C, Xie J, Buslov D, Fironov S, Kiselev A, Panchenko D, Cao X, Wei R, Wu Y, Zhu X, Tseng KL, Gao Z, Ju C, Yi X, Zheng H, Kappel C, Lundberg E.

Nat Methods. 2020 Jan;17(1):115. doi: 10.1038/s41592-019-0699-x.

PMID:
31822866
2.

Analysis of the Human Protein Atlas Image Classification competition.

Ouyang W, Winsnes CF, Hjelmare M, Cesnik AJ, Åkesson L, Xu H, Sullivan DP, Dai S, Lan J, Jinmo P, Galib SM, Henkel C, Hwang K, Poplavskiy D, Tunguz B, Wolfinger RD, Gu Y, Li C, Xie J, Buslov D, Fironov S, Kiselev A, Panchenko D, Cao X, Wei R, Wu Y, Zhu X, Tseng KL, Gao Z, Ju C, Yi X, Zheng H, Kappel C, Lundberg E.

Nat Methods. 2019 Dec;16(12):1254-1261. doi: 10.1038/s41592-019-0658-6. Epub 2019 Nov 28. Erratum in: Nat Methods. 2020 Jan;17(1):115.

PMID:
31780840
3.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.

Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium, Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J.

Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2.

4.

Breeding-assisted genomics: Applying meta-GWAS for milling and baking quality in CIMMYT wheat breeding program.

Battenfield SD, Sheridan JL, Silva LDCE, Miclaus KJ, Dreisigacker S, Wolfinger RD, Peña RJ, Singh RP, Jackson EW, Fritz AK, Guzmán C, Poland JA.

PLoS One. 2018 Nov 29;13(11):e0204757. doi: 10.1371/journal.pone.0204757. eCollection 2018.

5.

Chemometric Approaches for Developing Infrared Nanosensors To Image Anthracyclines.

Del Bonis-O'Donnell JT, Pinals RL, Jeong S, Thakrar A, Wolfinger RD, Landry MP.

Biochemistry. 2019 Jan 8;58(1):54-64. doi: 10.1021/acs.biochem.8b00926. Epub 2018 Dec 11.

6.

Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR.

Wolfinger RD, Beedanagari S, Boitier E, Chen T, Couttet P, Ellinger-Ziegelbauer H, Guillemain G, Mariet C, Mouritzen P, O'Lone R, Pine PS, Sharapova T, Yan J, Yuen PS, Thompson KL.

BMC Biotechnol. 2018 Feb 2;18(1):6. doi: 10.1186/s12896-018-0415-4.

7.

The international MAQC Society launches to enhance reproducibility of high-throughput technologies.

Shi L, Kusko R, Wolfinger RD, Haibe-Kains B, Fischer M, Sansone SA, Mason CE, Furlanello C, Jones WD, Ning B, Tong W.

Nat Biotechnol. 2017 Dec 8;35(12):1127-1128. doi: 10.1038/nbt.4029. No abstract available.

PMID:
29220036
8.

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer.

Seyednasrollah F, Koestler DC, Wang T, Piccolo SR, Vega R, Greiner R, Fuchs C, Gofer E, Kumar L, Wolfinger RD, Kanigel Winner K, Bare C, Neto EC, Yu T, Shen L, Abdallah K, Norman T, Stolovitzky G, Soule HR, Sweeney CJ, Ryan CJ, Scher HI, Sartor O, Elo LL, Zhou FL, Guinney J, Costello JC; Prostate Cancer DREAM Challenge Community.

JCO Clin Cancer Inform. 2017 Nov;1:1-15. doi: 10.1200/CCI.17.00018.

9.

Predicting human olfactory perception from chemical features of odor molecules.

Keller A, Gerkin RC, Guan Y, Dhurandhar A, Turu G, Szalai B, Mainland JD, Ihara Y, Yu CW, Wolfinger R, Vens C, Schietgat L, De Grave K, Norel R; DREAM Olfaction Prediction Consortium, Stolovitzky G, Cecchi GA, Vosshall LB, Meyer P.

Science. 2017 Feb 24;355(6327):820-826. doi: 10.1126/science.aal2014. Epub 2017 Feb 20.

10.

Identification of dietary patterns associated with obesity in a nationally representative survey of Canadian adults: application of a priori, hybrid, and simplified dietary pattern techniques.

Jessri M, Wolfinger RD, Lou WY, L'Abbé MR.

Am J Clin Nutr. 2017 Mar;105(3):669-684. doi: 10.3945/ajcn.116.134684. Epub 2017 Feb 1.

PMID:
28148504
11.

Absolute Measurement of Cardiac Injury-Induced microRNAs in Biofluids across Multiple Test Sites.

Thompson KL, Boitier E, Chen T, Couttet P, Ellinger-Ziegelbauer H, Goetschy M, Guillemain G, Kanki M, Kelsall J, Mariet C, de La Moureyre-Spire C, Mouritzen P, Nassirpour R, O'Lone R, Pine PS, Rosenzweig BA, Sharapova T, Smith A, Uchiyama H, Yan J, Yuen PS, Wolfinger R.

Toxicol Sci. 2016 Nov;154(1):115-125. Epub 2016 Sep 7.

PMID:
27605421
12.

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction.

Zhang W, Yu Y, Hertwig F, Thierry-Mieg J, Zhang W, Thierry-Mieg D, Wang J, Furlanello C, Devanarayan V, Cheng J, Deng Y, Hero B, Hong H, Jia M, Li L, Lin SM, Nikolsky Y, Oberthuer A, Qing T, Su Z, Volland R, Wang C, Wang MD, Ai J, Albanese D, Asgharzadeh S, Avigad S, Bao W, Bessarabova M, Brilliant MH, Brors B, Chierici M, Chu TM, Zhang J, Grundy RG, He MM, Hebbring S, Kaufman HL, Lababidi S, Lancashire LJ, Li Y, Lu XX, Luo H, Ma X, Ning B, Noguera R, Peifer M, Phan JH, Roels F, Rosswog C, Shao S, Shen J, Theissen J, Tonini GP, Vandesompele J, Wu PY, Xiao W, Xu J, Xu W, Xuan J, Yang Y, Ye Z, Dong Z, Zhang KK, Yin Y, Zhao C, Zheng Y, Wolfinger RD, Shi T, Malkas LH, Berthold F, Wang J, Tong W, Shi L, Peng Z, Fischer M.

Genome Biol. 2015 Jun 25;16:133. doi: 10.1186/s13059-015-0694-1.

13.

A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages.

Yu Y, Fuscoe JC, Zhao C, Guo C, Jia M, Qing T, Bannon DI, Lancashire L, Bao W, Du T, Luo H, Su Z, Jones WD, Moland CL, Branham WS, Qian F, Ning B, Li Y, Hong H, Guo L, Mei N, Shi T, Wang KY, Wolfinger RD, Nikolsky Y, Walker SJ, Duerksen-Hughes P, Mason CE, Tong W, Thierry-Mieg J, Thierry-Mieg D, Shi L, Wang C.

Nat Commun. 2014;5:3230. doi: 10.1038/ncomms4230.

14.

Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass.

Wilson CM, Rodriguez M Jr, Johnson CM, Martin SL, Chu TM, Wolfinger RD, Hauser LJ, Land ML, Klingeman DM, Syed MH, Ragauskas AJ, Tschaplinski TJ, Mielenz JR, Brown SD.

Biotechnol Biofuels. 2013 Dec 2;6(1):179. doi: 10.1186/1754-6834-6-179.

15.

Comparison of microarrays and RNA-seq for gene expression analyses of dose-response experiments.

Black MB, Parks BB, Pluta L, Chu TM, Allen BC, Wolfinger RD, Thomas RS.

Toxicol Sci. 2014 Feb;137(2):385-403. doi: 10.1093/toxsci/kft249. Epub 2013 Nov 5.

PMID:
24194394
16.

A genomics-based analysis of relative potencies of dioxin-like compounds in primary rat hepatocytes.

Rowlands JC, Budinsky R, Gollapudi B, Black MB, Wolfinger RD, Cukovic D, Dombkowski A, Thompson CM, Urban JD, Thomas RS.

Toxicol Sci. 2013 Dec;136(2):595-604. doi: 10.1093/toxsci/kft203. Epub 2013 Sep 17.

PMID:
24046277
17.

Summarizing the incidence of adverse events using volcano plots and time intervals.

Zink RC, Wolfinger RD, Mann G.

Clin Trials. 2013;10(3):398-406. doi: 10.1177/1740774513485311.

PMID:
23690094
18.

Principal variance component analysis of crop composition data: a case study on herbicide-tolerant cotton.

Harrison JM, Howard D, Malven M, Halls SC, Culler AH, Harrigan GG, Wolfinger RD.

J Agric Food Chem. 2013 Jul 3;61(26):6412-22. doi: 10.1021/jf400606t. Epub 2013 Jun 19.

PMID:
23647471
19.

Reanalysis of Richter et al. (2010) on reproducibility.

Wolfinger RD.

Nat Methods. 2013 May;10(5):373-4. doi: 10.1038/nmeth.2438. No abstract available.

PMID:
23629410
20.

Anti-Oligomannose Antibodies as Potential Serum Biomarkers of Aggressive Prostate Cancer.

Wang D, Dafik L, Nolley R, Huang W, Wolfinger RD, Wang LX, Peehl DM.

Drug Dev Res. 2013 Mar;74(2):65-80.

21.

Relative impact of incorporating pharmacokinetics on predicting in vivo hazard and mode of action from high-throughput in vitro toxicity assays.

Wetmore BA, Wambaugh JF, Ferguson SS, Li L, Clewell HJ 3rd, Judson RS, Freeman K, Bao W, Sochaski MA, Chu TM, Black MB, Healy E, Allen B, Andersen ME, Wolfinger RD, Thomas RS.

Toxicol Sci. 2013 Apr;132(2):327-46. doi: 10.1093/toxsci/kft012. Epub 2013 Jan 28.

PMID:
23358191
22.

Technical reproducibility of genotyping SNP arrays used in genome-wide association studies.

Hong H, Xu L, Liu J, Jones WD, Su Z, Ning B, Perkins R, Ge W, Miclaus K, Zhang L, Park K, Green B, Han T, Fang H, Lambert CG, Vega SC, Lin SM, Jafari N, Czika W, Wolfinger RD, Goodsaid F, Tong W, Shi L.

PLoS One. 2012;7(9):e44483. doi: 10.1371/journal.pone.0044483. Epub 2012 Sep 7.

23.

A comprehensive statistical analysis of predicting in vivo hazard using high-throughput in vitro screening.

Thomas RS, Black MB, Li L, Healy E, Chu TM, Bao W, Andersen ME, Wolfinger RD.

Toxicol Sci. 2012 Aug;128(2):398-417. doi: 10.1093/toxsci/kfs159. Epub 2012 Apr 26.

PMID:
22543276
24.

Kernel density weighted loess normalization improves the performance of detection within asymmetrical data.

Hsieh WP, Chu TM, Lin YM, Wolfinger RD.

BMC Bioinformatics. 2011 Jun 1;12:222. doi: 10.1186/1471-2105-12-222.

25.

Gene set analysis of genome-wide association studies: methodological issues and perspectives.

Wang L, Jia P, Wolfinger RD, Chen X, Zhao Z.

Genomics. 2011 Jul;98(1):1-8. doi: 10.1016/j.ygeno.2011.04.006. Epub 2011 Apr 30. Review.

26.

An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies.

Wang L, Jia P, Wolfinger RD, Chen X, Grayson BL, Aune TM, Zhao Z.

Bioinformatics. 2011 Mar 1;27(5):686-92. doi: 10.1093/bioinformatics/btq728. Epub 2011 Jan 25.

27.

Maternal influences on the transmission of leukocyte gene expression profiles in population samples from Brisbane, Australia.

Mason E, Tronc G, Nones K, Matigian N, Kim J, Aronow BJ, Wolfinger RD, Wells C, Gibson G.

PLoS One. 2010 Dec 31;5(12):e14479. doi: 10.1371/journal.pone.0014479.

28.

Development and application of bovine and porcine oligonucleotide arrays with protein-based annotation.

Garbe JR, Elsik CG, Antoniou E, Reecy JM, Clark KJ, Venkatraman A, Kim JW, Schnabel RD, Michael Dickens C, Wolfinger RD, Fahrenkrug SC, Taylor JF.

J Biomed Biotechnol. 2010;2010:453638. doi: 10.1155/2010/453638. Epub 2010 Dec 14.

29.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium.

Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30.

30.

Assessment of variability in GWAS with CRLMM genotyping algorithm on WTCCC coronary artery disease.

Zhang L, Yin S, Miclaus K, Chierici M, Vega S, Lambert C, Hong H, Wolfinger RD, Furlanello C, Goodsaid F.

Pharmacogenomics J. 2010 Aug;10(4):347-54. doi: 10.1038/tpj.2010.27.

PMID:
20676072
31.

Batch effects in the BRLMM genotype calling algorithm influence GWAS results for the Affymetrix 500K array.

Miclaus K, Wolfinger R, Vega S, Chierici M, Furlanello C, Lambert C, Hong H, Zhang L, Yin S, Goodsaid F.

Pharmacogenomics J. 2010 Aug;10(4):336-46. doi: 10.1038/tpj.2010.36.

PMID:
20676071
32.

Variability in GWAS analysis: the impact of genotype calling algorithm inconsistencies.

Miclaus K, Chierici M, Lambert C, Zhang L, Vega S, Hong H, Yin S, Furlanello C, Wolfinger R, Goodsaid F.

Pharmacogenomics J. 2010 Aug;10(4):324-35. doi: 10.1038/tpj.2010.46.

PMID:
20676070
33.

Genomic indicators in the blood predict drug-induced liver injury.

Huang J, Shi W, Zhang J, Chou JW, Paules RS, Gerrish K, Li J, Luo J, Wolfinger RD, Bao W, Chu TM, Nikolsky Y, Nikolskaya T, Dosymbekov D, Tsyganova MO, Shi L, Fan X, Corton JC, Chen M, Cheng Y, Tong W, Fang H, Bushel PR.

Pharmacogenomics J. 2010 Aug;10(4):267-77. doi: 10.1038/tpj.2010.33.

34.

Comparison of performance of one-color and two-color gene-expression analyses in predicting clinical endpoints of neuroblastoma patients.

Oberthuer A, Juraeva D, Li L, Kahlert Y, Westermann F, Eils R, Berthold F, Shi L, Wolfinger RD, Fischer M, Brors B.

Pharmacogenomics J. 2010 Aug;10(4):258-66. doi: 10.1038/tpj.2010.53.

35.

Consistency of predictive signature genes and classifiers generated using different microarray platforms.

Fan X, Lobenhofer EK, Chen M, Shi W, Huang J, Luo J, Zhang J, Walker SJ, Chu TM, Li L, Wolfinger R, Bao W, Paules RS, Bushel PR, Li J, Shi T, Nikolskaya T, Nikolsky Y, Hong H, Deng Y, Cheng Y, Fang H, Shi L, Tong W.

Pharmacogenomics J. 2010 Aug;10(4):247-57. doi: 10.1038/tpj.2010.34.

36.

Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.

Hong H, Shi L, Su Z, Ge W, Jones WD, Czika W, Miclaus K, Lambert CG, Vega SC, Zhang J, Ning B, Liu J, Green B, Xu L, Fang H, Perkins R, Lin SM, Jafari N, Park K, Ahn T, Chierici M, Furlanello C, Zhang L, Wolfinger RD, Goodsaid F, Tong W.

Pharmacogenomics J. 2010 Aug;10(4):364-74. doi: 10.1038/tpj.2010.24. Epub 2010 Apr 6.

37.

Geographical genomics of human leukocyte gene expression variation in southern Morocco.

Idaghdour Y, Czika W, Shianna KV, Lee SH, Visscher PM, Martin HC, Miclaus K, Jadallah SJ, Goldstein DB, Wolfinger RD, Gibson G.

Nat Genet. 2010 Jan;42(1):62-7. doi: 10.1038/ng.495. Epub 2009 Dec 6.

38.

A unified mixed effects model for gene set analysis of time course microarray experiments.

Wang L, Chen X, Wolfinger RD, Franklin JL, Coffey RJ, Zhang B.

Stat Appl Genet Mol Biol. 2009;8:Article 47. doi: 10.2202/1544-6115.1484. Epub 2009 Nov 7.

39.

Use of short-term transcriptional profiles to assess the long-term cancer-related safety of environmental and industrial chemicals.

Thomas RS, Bao W, Chu TM, Bessarabova M, Nikolskaya T, Nikolsky Y, Andersen ME, Wolfinger RD.

Toxicol Sci. 2009 Dec;112(2):311-21. doi: 10.1093/toxsci/kfp233. Epub 2009 Sep 23.

PMID:
19776212
40.

SNP selection and multidimensional scaling to quantify population structure.

Miclaus K, Wolfinger R, Czika W.

Genet Epidemiol. 2009 Sep;33(6):488-96. doi: 10.1002/gepi.20401.

PMID:
19194989
41.

Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum.

Mudge J, Miller NA, Khrebtukova I, Lindquist IE, May GD, Huntley JJ, Luo S, Zhang L, van Velkinburgh JC, Farmer AD, Lewis S, Beavis WD, Schilkey FD, Virk SM, Black CF, Myers MK, Mader LC, Langley RJ, Utsey JP, Kim RW, Roberts RC, Khalsa SK, Garcia M, Ambriz-Griffith V, Harlan R, Czika W, Martin S, Wolfinger RD, Perrone-Bizzozero NI, Schroth GP, Kingsmore SF.

PLoS One. 2008;3(11):e3625. doi: 10.1371/journal.pone.0003625. Epub 2008 Nov 5.

42.

An integrated approach for the analysis of biological pathways using mixed models.

Wang L, Zhang B, Wolfinger RD, Chen X.

PLoS Genet. 2008 Jul;4(7):e1000115. doi: 10.1371/journal.pgen.1000115. Epub 2008 Jul 4.

43.

An R2 statistic for fixed effects in the linear mixed model.

Edwards LJ, Muller KE, Wolfinger RD, Qaqish BF, Schabenberger O.

Stat Med. 2008 Dec 20;27(29):6137-57. doi: 10.1002/sim.3429.

44.

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.

Shi L, Jones WD, Jensen RV, Harris SC, Perkins RG, Goodsaid FM, Guo L, Croner LJ, Boysen C, Fang H, Qian F, Amur S, Bao W, Barbacioru CC, Bertholet V, Cao XM, Chu TM, Collins PJ, Fan XH, Frueh FW, Fuscoe JC, Guo X, Han J, Herman D, Hong H, Kawasaki ES, Li QZ, Luo Y, Ma Y, Mei N, Peterson RL, Puri RK, Shippy R, Su Z, Sun YA, Sun H, Thorn B, Turpaz Y, Wang C, Wang SJ, Warrington JA, Willey JC, Wu J, Xie Q, Zhang L, Zhang L, Zhong S, Wolfinger RD, Tong W.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S10. doi: 10.1186/1471-2105-9-S9-S10.

45.

Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.

Ascencio-Ibáñez JT, Sozzani R, Lee TJ, Chu TM, Wolfinger RD, Cella R, Hanley-Bowdoin L.

Plant Physiol. 2008 Sep;148(1):436-54. doi: 10.1104/pp.108.121038. Epub 2008 Jul 23.

46.

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories.

Boedigheimer MJ, Wolfinger RD, Bass MB, Bushel PR, Chou JW, Cooper M, Corton JC, Fostel J, Hester S, Lee JS, Liu F, Liu J, Qian HR, Quackenbush J, Pettit S, Thompson KL.

BMC Genomics. 2008 Jun 12;9:285. doi: 10.1186/1471-2164-9-285.

47.

A gene expression signature of confinement in peripheral blood of red wolves (Canis rufus).

Kennerly E, Ballmann A, Martin S, Wolfinger R, Gregory S, Stoskopf M, Gibson G.

Mol Ecol. 2008 Jun;17(11):2782-91. doi: 10.1111/j.1365-294X.2008.03775.x. Epub 2008 May 2.

PMID:
18466232
48.

Statistical analysis of relative labeled mass spectrometry data from complex samples using ANOVA.

Oberg AL, Mahoney DW, Eckel-Passow JE, Malone CJ, Wolfinger RD, Hill EG, Cooper LT, Onuma OK, Spiro C, Therneau TM, Bergen HR 3rd.

J Proteome Res. 2008 Jan;7(1):225-33. doi: 10.1021/pr700734f. Epub 2008 Jan 4.

49.

Combining p-values in large-scale genomics experiments.

Zaykin DV, Zhivotovsky LA, Czika W, Shao S, Wolfinger RD.

Pharm Stat. 2007 Jul-Sep;6(3):217-26. Erratum in: Pharm Stat. 2008 Oct-Dec;7(4):308.

50.

Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion.

Adomas A, Heller G, Li G, Olson A, Chu TM, Osborne J, Craig D, van Zyl L, Wolfinger R, Sederoff R, Dean RA, Stenlid J, Finlay R, Asiegbu FO.

Tree Physiol. 2007 Oct;27(10):1441-58.

PMID:
17669735

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