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Items: 25

1.

TWIST1 Heterodimerization with E12 Requires Coordinated Protein Phosphorylation to Regulate Periostin Expression.

Mikheeva SA, Camp ND, Huang L, Jain A, Jung SY, Avci NG, Tokita M, Wolf-Yadlin A, Zhang J, Tapscott SJ, Rostomily RC, Mikheev AM.

Cancers (Basel). 2019 Sep 18;11(9). pii: E1392. doi: 10.3390/cancers11091392.

2.

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data.

Köksal AS, Beck K, Cronin DR, McKenna A, Camp ND, Srivastava S, MacGilvray ME, Bodík R, Wolf-Yadlin A, Fraenkel E, Fisher J, Gitter A.

Cell Rep. 2018 Sep 25;24(13):3607-3618. doi: 10.1016/j.celrep.2018.08.085.

3.

Development of Selected Reaction Monitoring Methods to Systematically Quantify Kinase Abundance and Phosphorylation Stoichiometry in Human Samples.

Beck K, Camp N, Bereman M, Bollinger J, Egertson J, MacCoss M, Wolf-Yadlin A.

Methods Mol Biol. 2017;1636:353-369. doi: 10.1007/978-1-4939-7154-1_23.

PMID:
28730491
4.

Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism.

Sychev ZE, Hu A, DiMaio TA, Gitter A, Camp ND, Noble WS, Wolf-Yadlin A, Lagunoff M.

PLoS Pathog. 2017 Mar 3;13(3):e1006256. doi: 10.1371/journal.ppat.1006256. eCollection 2017 Mar.

5.

A computationally engineered RAS rheostat reveals RAS-ERK signaling dynamics.

Rose JC, Huang PS, Camp ND, Ye J, Leidal AM, Goreshnik I, Trevillian BM, Dickinson MS, Cunningham-Bryant D, Debnath J, Baker D, Wolf-Yadlin A, Maly DJ.

Nat Chem Biol. 2017 Jan;13(1):119-126. doi: 10.1038/nchembio.2244. Epub 2016 Nov 21.

6.

Endogenous N-terminal Domain Cleavage Modulates α1D-Adrenergic Receptor Pharmacodynamics.

Kountz TS, Lee KS, Aggarwal-Howarth S, Curran E, Park JM, Harris DA, Stewart A, Hendrickson J, Camp ND, Wolf-Yadlin A, Wang EH, Scott JD, Hague C.

J Biol Chem. 2016 Aug 26;291(35):18210-21. doi: 10.1074/jbc.M116.729517. Epub 2016 Jul 5.

7.

Technical advances in proteomics: new developments in data-independent acquisition.

Hu A, Noble WS, Wolf-Yadlin A.

F1000Res. 2016 Mar 31;5. pii: F1000 Faculty Rev-419. doi: 10.12688/f1000research.7042.1. eCollection 2016. Review.

8.

Methods for the Analysis of Protein Phosphorylation-Mediated Cellular Signaling Networks.

White FM, Wolf-Yadlin A.

Annu Rev Anal Chem (Palo Alto Calif). 2016 Jun 12;9(1):295-315. doi: 10.1146/annurev-anchem-071015-041542. Epub 2016 Mar 30. Review.

PMID:
27049636
9.

Dynamic mass redistribution reveals diverging importance of PDZ-ligands for G protein-coupled receptor pharmacodynamics.

Camp ND, Lee KS, Cherry A, Wacker-Mhyre JL, Kountz TS, Park JM, Harris DA, Estrada M, Stewart A, Stella N, Wolf-Yadlin A, Hague C.

Pharmacol Res. 2016 Mar;105:13-21. doi: 10.1016/j.phrs.2016.01.003. Epub 2016 Jan 7.

10.

Individual protomers of a G protein-coupled receptor dimer integrate distinct functional modules.

Camp ND, Lee KS, Wacker-Mhyre JL, Kountz TS, Park JM, Harris DA, Estrada M, Stewart A, Wolf-Yadlin A, Hague C.

Cell Discov. 2015;1. pii: 15011. Epub 2015 Jun 16.

11.

The Tec Kinase-Regulated Phosphoproteome Reveals a Mechanism for the Regulation of Inhibitory Signals in Murine Macrophages.

Tampella G, Kerns HM, Niu D, Singh S, Khim S, Bosch KA, Garrett ME, Moguche A, Evans E, Browning B, Jahan TA, Nacht M, Wolf-Yadlin A, Plebani A, Hamerman JA, Rawlings DJ, James RG.

J Immunol. 2015 Jul 1;195(1):246-56. doi: 10.4049/jimmunol.1403238. Epub 2015 May 29.

12.

Protein kinase PKN1 represses Wnt/β-catenin signaling in human melanoma cells.

James RG, Bosch KA, Kulikauskas RM, Yang PT, Robin NC, Toroni RA, Biechele TL, Berndt JD, von Haller PD, Eng JK, Wolf-Yadlin A, Chien AJ, Moon RT.

J Biol Chem. 2013 Nov 29;288(48):34658-70. doi: 10.1074/jbc.M113.500314. Epub 2013 Oct 10.

13.

Receptor tyrosine kinases fall into distinct classes based on their inferred signaling networks.

Wagner JP, Wolf-Yadlin A, Sevecka M, Grenier JK, Root DE, Lauffenburger DA, MacBeath G.

Sci Signal. 2013 Jul 16;6(284):ra58. doi: 10.1126/scisignal.2003994.

14.

A disease-associated PTPN22 variant promotes systemic autoimmunity in murine models.

Dai X, James RG, Habib T, Singh S, Jackson S, Khim S, Moon RT, Liggitt D, Wolf-Yadlin A, Buckner JH, Rawlings DJ.

J Clin Invest. 2013 May;123(5):2024-36. doi: 10.1172/JCI66963. Epub 2013 Apr 24.

15.

A general molecular affinity strategy for global detection and proteomic analysis of lysine methylation.

Moore KE, Carlson SM, Camp ND, Cheung P, James RG, Chua KF, Wolf-Yadlin A, Gozani O.

Mol Cell. 2013 May 9;50(3):444-56. doi: 10.1016/j.molcel.2013.03.005. Epub 2013 Apr 11.

16.

Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: protein synthesis, cell proliferation, and T-cell activation.

Navare AT, Sova P, Purdy DE, Weiss JM, Wolf-Yadlin A, Korth MJ, Chang ST, Proll SC, Jahan TA, Krasnoselsky AL, Palermo RE, Katze MG.

Virology. 2012 Jul 20;429(1):37-46. doi: 10.1016/j.virol.2012.03.026. Epub 2012 Apr 26.

17.

Lysate microarrays enable high-throughput, quantitative investigations of cellular signaling.

Sevecka M, Wolf-Yadlin A, MacBeath G.

Mol Cell Proteomics. 2011 Apr;10(4):M110.005363. doi: 10.1074/mcp.M110.005363. Epub 2011 Feb 4.

18.

Maximum entropy reconstructions of dynamic signaling networks from quantitative proteomics data.

Locasale JW, Wolf-Yadlin A.

PLoS One. 2009 Aug 26;4(8):e6522. doi: 10.1371/journal.pone.0006522.

19.

Dissecting protein function and signaling using protein microarrays.

Wolf-Yadlin A, Sevecka M, MacBeath G.

Curr Opin Chem Biol. 2009 Oct;13(4):398-405. doi: 10.1016/j.cbpa.2009.06.027. Epub 2009 Aug 5. Review.

20.

Linear combinations of docking affinities explain quantitative differences in RTK signaling.

Gordus A, Krall JA, Beyer EM, Kaushansky A, Wolf-Yadlin A, Sevecka M, Chang BH, Rush J, MacBeath G.

Mol Syst Biol. 2009;5:235. doi: 10.1038/msb.2008.72. Epub 2009 Jan 20.

21.

Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks.

Zhang Y, Wolf-Yadlin A, White FM.

Methods Mol Biol. 2007;359:203-12.

PMID:
17484120
22.

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks.

Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM.

Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5860-5. Epub 2007 Mar 26.

23.

Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data.

Kumar N, Wolf-Yadlin A, White FM, Lauffenburger DA.

PLoS Comput Biol. 2007 Jan 5;3(1):e4. Epub 2006 Nov 21.

24.

Effects of HER2 overexpression on cell signaling networks governing proliferation and migration.

Wolf-Yadlin A, Kumar N, Zhang Y, Hautaniemi S, Zaman M, Kim HD, Grantcharova V, Lauffenburger DA, White FM.

Mol Syst Biol. 2006;2:54. Epub 2006 Oct 3.

25.

Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules.

Zhang Y, Wolf-Yadlin A, Ross PL, Pappin DJ, Rush J, Lauffenburger DA, White FM.

Mol Cell Proteomics. 2005 Sep;4(9):1240-50. Epub 2005 Jun 11.

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