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Extra-pair paternity as a strategy to reduce the costs of heterospecific reproduction? Insights from the crow hybrid zone.

Knief U, Bossu CM, Wolf JBW.

J Evol Biol. 2020 Feb 18. doi: 10.1111/jeb.13607. [Epub ahead of print]


Dominance relationships and coalitionary aggression against conspecifics in female carrion crows.

Holtmann B, Buskas J, Steele M, Solokovskis K, Wolf JBW.

Sci Rep. 2019 Nov 4;9(1):15922. doi: 10.1038/s41598-019-52177-7.


Purifying Selection in Corvids Is Less Efficient on Islands.

Kutschera VE, Poelstra JW, Botero-Castro F, Dussex N, Gemmell NJ, Hunt GR, Ritchie MG, Rutz C, Wiberg RAW, Wolf JBW.

Mol Biol Evol. 2020 Feb 1;37(2):469-474. doi: 10.1093/molbev/msz233.


Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio ω for Closely Related Species.

Mugal CF, Kutschera VE, Botero-Castro F, Wolf JBW, Kaj I.

Mol Biol Evol. 2020 Jan 1;37(1):260-279. doi: 10.1093/molbev/msz203.


Greenbeard Genes: Theory and Reality.

Madgwick PG, Belcher LJ, Wolf JB.

Trends Ecol Evol. 2019 Dec;34(12):1092-1103. doi: 10.1016/j.tree.2019.08.001. Epub 2019 Sep 2. Review.


Individual Cryptic Scaling Relationships and the Evolution of Animal Form.

Frankino WA, Bakota E, Dworkin I, Wilkinson GS, Wolf JB, Shingleton AW.

Integr Comp Biol. 2019 Nov 1;59(5):1411-1428. doi: 10.1093/icb/icz135.


Intraspecific Diversity of Fission Yeast Mitochondrial Genomes.

Tao YT, Suo F, Tusso S, Wang YK, Huang S, Wolf JBW, Du LL.

Genome Biol Evol. 2019 Aug 1;11(8):2312-2329. doi: 10.1093/gbe/evz165.


Conditional expression explains molecular evolution of social genes in a microbe.

de Oliveira JL, Morales AC, Stewart B, Gruenheit N, Engelmoer J, Brown SB, de Brito RA, Hurst LD, Urrutia AO, Thompson CRL, Wolf JB.

Nat Commun. 2019 Jul 23;10(1):3284. doi: 10.1038/s41467-019-11237-2.


Ancestral Admixture Is the Main Determinant of Global Biodiversity in Fission Yeast.

Tusso S, Nieuwenhuis BPS, Sedlazeck FJ, Davey JW, Jeffares DC, Wolf JBW.

Mol Biol Evol. 2019 Sep 1;36(9):1975-1989. doi: 10.1093/molbev/msz126.


Killer whale genomes reveal a complex history of recurrent admixture and vicariance.

Foote AD, Martin MD, Louis M, Pacheco G, Robertson KM, Sinding MS, Amaral AR, Baird RW, Baker CS, Ballance L, Barlow J, Brownlow A, Collins T, Constantine R, Dabin W, Dalla Rosa L, Davison NJ, Durban JW, Esteban R, Ferguson SH, Gerrodette T, Guinet C, Hanson MB, Hoggard W, Matthews CJD, Samarra FIP, de Stephanis R, Tavares SB, Tixier P, Totterdell JA, Wade P, Excoffier L, Gilbert MTP, Wolf JBW, Morin PA.

Mol Ecol. 2019 Jul;28(14):3427-3444. doi: 10.1111/mec.15099. Epub 2019 May 27.


Genomic Perspective on Multivariate Variation, Pleiotropy, and Evolution.

Melo D, Marroig G, Wolf JB.

J Hered. 2019 Jul 1;110(4):479-493. doi: 10.1093/jhered/esz011.


Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone.

Knief U, Bossu CM, Saino N, Hansson B, Poelstra J, Vijay N, Weissensteiner M, Wolf JBW.

Nat Ecol Evol. 2019 Apr;3(4):570-576. doi: 10.1038/s41559-019-0847-9. Epub 2019 Mar 25.


Fur seal microbiota are shaped by the social and physical environment, show mother-offspring similarities and are associated with host genetic quality.

Grosser S, Sauer J, Paijmans AJ, Caspers BA, Forcada J, Wolf JBW, Hoffman JI.

Mol Ecol. 2019 May;28(9):2406-2422. doi: 10.1111/mec.15070. Epub 2019 Apr 29.


In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation.

Wu CC, Klaesson A, Buskas J, Ranefall P, Mirzazadeh R, Söderberg O, Wolf JBW.

J Exp Biol. 2019 Mar 8;222(Pt 5). pii: jeb194431. doi: 10.1242/jeb.194431.


Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history.

Stoffel MA, Humble E, Paijmans AJ, Acevedo-Whitehouse K, Chilvers BL, Dickerson B, Galimberti F, Gemmell NJ, Goldsworthy SD, Nichols HJ, Krüger O, Negro S, Osborne A, Pastor T, Robertson BC, Sanvito S, Schultz JK, Shafer ABA, Wolf JBW, Hoffman JI.

Nat Commun. 2018 Nov 16;9(1):4836. doi: 10.1038/s41467-018-06695-z.


Evolutionary Quantitative Genetics of Genomic Imprinting.

O'Brien EK, Wolf JB.

Genetics. 2019 Jan;211(1):75-88. doi: 10.1534/genetics.118.301373. Epub 2018 Nov 2.


Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin.

Hooper R, Brealey JC, van der Valk T, Alberdi A, Durban JW, Fearnbach H, Robertson KM, Baird RW, Bradley Hanson M, Wade P, Gilbert MTP, Morin PA, Wolf JBW, Foote AD, Guschanski K.

Mol Ecol. 2019 Jan;28(2):484-502. doi: 10.1111/mec.14860. Epub 2018 Oct 24.


RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding.

Humble E, Dasmahapatra KK, Martinez-Barrio A, Gregório I, Forcada J, Polikeit AC, Goldsworthy SD, Goebel ME, Kalinowski J, Wolf JBW, Hoffman JI.

G3 (Bethesda). 2018 Jul 31;8(8):2709-2722. doi: 10.1534/g3.118.200171.


Strategic investment explains patterns of cooperation and cheating in a microbe.

Madgwick PG, Stewart B, Belcher LJ, Thompson CRL, Wolf JB.

Proc Natl Acad Sci U S A. 2018 May 22;115(21):E4823-E4832. doi: 10.1073/pnas.1716087115. Epub 2018 May 7.


Repeated evolution of self-compatibility for reproductive assurance.

Nieuwenhuis BPS, Tusso S, Bjerling P, Stångberg J, Wolf JBW, Immler S.

Nat Commun. 2018 Apr 24;9(1):1639. doi: 10.1038/s41467-018-04054-6.


Parallelism in genomic landscapes of differentiation, conserved genomic features and the role of linked selection.

Ellegren H, Wolf JBW.

J Evol Biol. 2017 Aug;30(8):1516-1518. doi: 10.1111/jeb.13113. No abstract available.


Genomewide patterns of variation in genetic diversity are shared among populations, species and higher-order taxa.

Vijay N, Weissensteiner M, Burri R, Kawakami T, Ellegren H, Wolf JBW.

Mol Ecol. 2017 Aug;26(16):4284-4295. doi: 10.1111/mec.14195. Epub 2017 Jun 27.


The coadaptation theory for genomic imprinting.

O'Brien EK, Wolf JB.

Evol Lett. 2017 May 3;1(1):49-59. doi: 10.1002/evl3.5. eCollection 2017 May.


Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications.

Weissensteiner MH, Pang AWC, Bunikis I, Höijer I, Vinnere-Petterson O, Suh A, Wolf JBW.

Genome Res. 2017 May;27(5):697-708. doi: 10.1101/gr.215095.116. Epub 2017 Mar 30.


A polychromatic 'greenbeard' locus determines patterns of cooperation in a social amoeba.

Gruenheit N, Parkinson K, Stewart B, Howie JA, Wolf JB, Thompson CR.

Nat Commun. 2017 Jan 25;8:14171. doi: 10.1038/ncomms14171.


Making sense of genomic islands of differentiation in light of speciation.

Wolf JB, Ellegren H.

Nat Rev Genet. 2017 Feb;18(2):87-100. doi: 10.1038/nrg.2016.133. Epub 2016 Nov 14. Review.


Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex.

Vijay N, Bossu CM, Poelstra JW, Weissensteiner MH, Suh A, Kryukov AP, Wolf JB.

Nat Commun. 2016 Oct 31;7:13195. doi: 10.1038/ncomms13195.


Genome-culture coevolution promotes rapid divergence of killer whale ecotypes.

Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, Worley KC, Excoffier L, Morin PA, Gilbert MTP, Wolf JBW.

Nat Commun. 2016 May 31;7:11693. doi: 10.1038/ncomms11693.


On the Challenge of Interpreting Census Data: Insights from a Study of an Endangered Pinniped.

Trillmich F, Meise K, Kalberer S, Mueller B, Piedrahita P, Pörschmann U, Wolf JB, Krüger O.

PLoS One. 2016 May 5;11(5):e0154588. doi: 10.1371/journal.pone.0154588. eCollection 2016.


Evolutionary genetics of maternal effects.

Wolf JB, Wade MJ.

Evolution. 2016 Apr;70(4):827-39. doi: 10.1111/evo.12905. Epub 2016 Mar 29.


Disruptive selection without genome-wide evolution across a migratory divide.

von Rönn JA, Shafer AB, Wolf JB.

Mol Ecol. 2016 Jun;25(11):2529-41. doi: 10.1111/mec.13521. Epub 2016 Mar 9.


Forecasting Ecological Genomics: High-Tech Animal Instrumentation Meets High-Throughput Sequencing.

Shafer AB, Northrup JM, Wikelski M, Wittemyer G, Wolf JB.

PLoS Biol. 2016 Jan 8;14(1):e1002350. doi: 10.1371/journal.pbio.1002350. eCollection 2016 Jan.


Reply to Garner et al.

Shafer ABA, Wolf JBW, Alves PC, Bergström L, Colling G, Dalén L, De Meester L, Ekblom R, Fior S, Hajibabaei M, Hoezel AR, Hoglund J, Jensen EL, Krützen M, Norman AJ, Österling EM, Ouborg NJ, Piccolo J, Primmer CR, Reed FA, Roumet M, Salmona J, Schwartz MK, Segelbacher G, Thaulow J, Valtonen M, Vergeer P, Weissensteiner M, Wheat CW, Vilà C, Zieliński P.

Trends Ecol Evol. 2016 Feb;31(2):83-84. doi: 10.1016/j.tree.2015.11.010. Epub 2015 Dec 17. No abstract available.


A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.

Humble E, Martinez-Barrio A, Forcada J, Trathan PN, Thorne MA, Hoffmann M, Wolf JB, Hoffman JI.

Mol Ecol Resour. 2016 Jul;16(4):909-21. doi: 10.1111/1755-0998.12502. Epub 2016 Jan 20.


Single Nucleotides in the mtDNA Sequence Modify Mitochondrial Molecular Function and Are Associated with Sex-Specific Effects on Fertility and Aging.

Camus MF, Wolf JB, Morrow EH, Dowling DK.

Curr Biol. 2015 Oct 19;25(20):2717-22. doi: 10.1016/j.cub.2015.09.012. Epub 2015 Oct 8.


Differences in foraging ecology align with genetically divergent ecotypes of a highly mobile marine top predator.

Jeglinski JW, Wolf JB, Werner C, Costa DP, Trillmich F.

Oecologia. 2015 Dec;179(4):1041-52. doi: 10.1007/s00442-015-3424-1. Epub 2015 Aug 26.


Transcriptomics of colour patterning and coloration shifts in crows.

Poelstra JW, Vijay N, Hoeppner MP, Wolf JB.

Mol Ecol. 2015 Sep;24(18):4617-28. doi: 10.1111/mec.13353. Epub 2015 Sep 10.


Fitness Trade-offs Result in the Illusion of Social Success.

Wolf JB, Howie JA, Parkinson K, Gruenheit N, Melo D, Rozen D, Thompson CR.

Curr Biol. 2015 Apr 20;25(8):1086-90. doi: 10.1016/j.cub.2015.02.061. Epub 2015 Mar 26.


Coadaptation between mother and offspring: why not?

Wolf JB, Cowley M, Ward A.

PLoS Biol. 2015 Mar 18;13(3):e1002085. doi: 10.1371/journal.pbio.1002085. eCollection 2015 Mar.


Convergent evolution of the genomes of marine mammals.

Foote AD, Liu Y, Thomas GW, Vinař T, Alföldi J, Deng J, Dugan S, van Elk CE, Hunter ME, Joshi V, Khan Z, Kovar C, Lee SL, Lindblad-Toh K, Mancia A, Nielsen R, Qin X, Qu J, Raney BJ, Vijay N, Wolf JB, Hahn MW, Muzny DM, Worley KC, Gilbert MT, Gibbs RA.

Nat Genet. 2015 Mar;47(3):272-5. doi: 10.1038/ng.3198. Epub 2015 Jan 26.


Transcontinental migratory connectivity predicts parasite prevalence in breeding populations of the European barn swallow.

von Rönn JA, Harrod C, Bensch S, Wolf JB.

J Evol Biol. 2015 Mar;28(3):535-46. doi: 10.1111/jeb.12585. Epub 2015 Feb 26.


A field guide to whole-genome sequencing, assembly and annotation.

Ekblom R, Wolf JB.

Evol Appl. 2014 Nov;7(9):1026-42. doi: 10.1111/eva.12178. Epub 2014 Jun 24. Review.


Genomics and the challenging translation into conservation practice.

Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, Höglund J, Jensen EL, Krause J, Kristensen TN, Krützen M, McKay JK, Norman AJ, Ogden R, Österling EM, Ouborg NJ, Piccolo J, Popović D, Primmer CR, Reed FA, Roumet M, Salmona J, Schenekar T, Schwartz MK, Segelbacher G, Senn H, Thaulow J, Valtonen M, Veale A, Vergeer P, Vijay N, Vilà C, Weissensteiner M, Wennerström L, Wheat CW, Zieliński P.

Trends Ecol Evol. 2015 Feb;30(2):78-87. doi: 10.1016/j.tree.2014.11.009. Epub 2014 Dec 17.


Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: in silico evaluation of power, biases and proof of concept in Atlantic walrus.

Shafer AB, Gattepaille LM, Stewart RE, Wolf JB.

Mol Ecol. 2015 Jan;24(2):328-45. doi: 10.1111/mec.13034. Epub 2015 Jan 10.


Genomic imprinting: theories and data.

Spencer HG, Wolf JB.

Heredity (Edinb). 2014 Aug;113(2):93-5. doi: 10.1038/hdy.2014.52. No abstract available.


Evolutionary rates for multivariate traits: the role of selection and genetic variation.

Pitchers W, Wolf JB, Tregenza T, Hunt J, Dworkin I.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 19;369(1649):20130252. doi: 10.1098/rstb.2013.0252.


The genomic landscape underlying phenotypic integrity in the face of gene flow in crows.

Poelstra JW, Vijay N, Bossu CM, Lantz H, Ryll B, Müller I, Baglione V, Unneberg P, Wikelski M, Grabherr MG, Wolf JB.

Science. 2014 Jun 20;344(6190):1410-4. doi: 10.1126/science.1253226.


The evolution of genomic imprinting: theories, predictions and empirical tests.

Patten MM, Ross L, Curley JP, Queller DC, Bonduriansky R, Wolf JB.

Heredity (Edinb). 2014 Aug;113(2):119-28. doi: 10.1038/hdy.2014.29. Epub 2014 Apr 23. Review.


Quantitative genetic versions of Hamilton's rule with empirical applications.

McGlothlin JW, Wolf JB, Brodie ED 3rd, Moore AJ.

Philos Trans R Soc Lond B Biol Sci. 2014 Mar 31;369(1642):20130358. doi: 10.1098/rstb.2013.0358. Print 2014 May 19.


Imprinted gene expression in hybrids: perturbed mechanisms and evolutionary implications.

Wolf JB, Oakey RJ, Feil R.

Heredity (Edinb). 2014 Aug;113(2):167-75. doi: 10.1038/hdy.2014.11. Epub 2014 Mar 12. Review.

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