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Dynamics of microRNA expression during mouse prenatal development.

Rahmanian S, Murad R, Breschi A, Zeng W, Mackiewicz M, Williams B, Davis CA, Roberts B, Meadows S, Moore D, Trout D, Zaleski C, Dobin A, Sei LH, Drenkow J, Scavelli A, Gingeras TR, Wold BJ, Myers RM, Guigó R, Mortazavi A.

Genome Res. 2019 Nov;29(11):1900-1909. doi: 10.1101/gr.248997.119. Epub 2019 Oct 23.


Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development.

Zhou W, Yui MA, Williams BA, Yun J, Wold BJ, Cai L, Rothenberg EV.

Cell Syst. 2019 Oct 23;9(4):321-337.e9. doi: 10.1016/j.cels.2019.09.008. Epub 2019 Oct 16.


Leisure-time physical activity before pregnancy and risk of hyperemesis gravidarum: a population-based cohort study.

Owe KM, Støer N, Wold BH, Magnus MC, Nystad W, Vikanes ÅV.

Prev Med. 2019 Aug;125:49-54. doi: 10.1016/j.ypmed.2019.05.002. Epub 2019 May 8.


Associations between family structure and young people's physical activity and screen time behaviors.

Langøy A, Smith ORF, Wold B, Samdal O, Haug EM.

BMC Public Health. 2019 Apr 25;19(1):433. doi: 10.1186/s12889-019-6740-2.


Leisure-time physical activity and participation in organized sports: Changes from 1985 to 2014 in Finland and Norway.

Mathisen FKS, Kokko S, Tynjälä J, Torsheim T, Wold B.

Scand J Med Sci Sports. 2019 Aug;29(8):1232-1242. doi: 10.1111/sms.13431. Epub 2019 Apr 29.


Health complaints among adolescents in Norway: A twenty-year perspective on trends.

Potrebny T, Wiium N, Haugstvedt A, Sollesnes R, Torsheim T, Wold B, Thuen F.

PLoS One. 2019 Jan 9;14(1):e0210509. doi: 10.1371/journal.pone.0210509. eCollection 2019.


Changes in diet through adolescence and early adulthood: longitudinal trajectories and association with key life transitions.

Winpenny EM, van Sluijs EMF, White M, Klepp KI, Wold B, Lien N.

Int J Behav Nutr Phys Act. 2018 Sep 10;15(1):86. doi: 10.1186/s12966-018-0719-8.


Promoting additional activity in youth soccer: a half-longitudinal study on the influence of autonomy-supportive coaching and basic psychological need satisfaction.

Gjesdal S, Wold B, Ommundsen Y.

J Sports Sci. 2019 Feb;37(3):268-276. doi: 10.1080/02640414.2018.1495394. Epub 2018 Jul 5.


Post-Traumatic Stress Disorder Delineating the Progression and Underlying Mechanisms Following Blast Traumatic Brain Injury.

Wold BL, Nolan R, Nwafor D, Nguyen L, Cheyuo C, Turner R, Rosen C, Marsh R.

J Neurosci Neuropharmacol. 2018;4(1). pii: 118. Epub 2018 Mar 2.


Health-promotion research over three decades: The social-ecological model and challenges in implementation of interventions.

Wold B, Mittelmark MB.

Scand J Public Health. 2018 Feb;46(20_suppl):20-26. doi: 10.1177/1403494817743893.


Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements.

Angeles-Albores D, Puckett Robinson C, Williams BA, Wold BJ, Sternberg PW.

Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):E2930-E2939. doi: 10.1073/pnas.1712387115. Epub 2018 Mar 12.


The Human Cell Atlas.

Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N; Human Cell Atlas Meeting Participants.

Elife. 2017 Dec 5;6. pii: e27041. doi: 10.7554/eLife.27041.


Mapping a multiplexed zoo of mRNA expression.

Choi HM, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin AC, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, Patterson PH, Davidson EH, Mazmanian SK, Prober DA, van de Rijn M, Leadbetter JR, Newman DK, Readhead C, Bronner ME, Wold B, Lansford R, Sauka-Spengler T, Fraser SE, Pierce NA.

Development. 2016 Oct 1;143(19):3632-3637.


Growth Trajectories of Health Behaviors from Adolescence through Young Adulthood.

Wiium N, Breivik K, Wold B.

Int J Environ Res Public Health. 2015 Oct 28;12(11):13711-29. doi: 10.3390/ijerph121113711.


Trajectories of alcohol use and association with symptoms of depression from early to late adolescence: The Norwegian Longitudinal Health Behaviour Study.

Skogen JC, Knudsen AK, Hysing M, Wold B, Sivertsen B.

Drug Alcohol Rev. 2016 May;35(3):307-16. doi: 10.1111/dar.12350. Epub 2015 Oct 23.


Changes from 1986 to 2006 in reasons for liking leisure-time physical activity among adolescents.

Wold B, Littlecott H, Tynjälä J, Samdal O, Moore L, Roberts C, Kannas L, Villberg J, Aarø LE.

Scand J Med Sci Sports. 2016 Aug;26(8):951-9. doi: 10.1111/sms.12528. Epub 2015 Jul 29.


Symptoms of Depression and Difficulty Initiating Sleep from Early Adolescence to Early Adulthood: A Longitudinal Study.

Hayley AC, Skogen JC, Sivertsen B, Wold B, Berk M, Pasco JA, Øverland S.

Sleep. 2015 Oct 1;38(10):1599-606. doi: 10.5665/sleep.5056.


The NIH BD2K center for big data in translational genomics.

Paten B, Diekhans M, Druker BJ, Friend S, Guinney J, Gassner N, Guttman M, Kent WJ, Mantey P, Margolin AA, Massie M, Novak AM, Nothaft F, Pachter L, Patterson D, Smuga-Otto M, Stuart JM, Van't Veer L, Wold B, Haussler D.

J Am Med Inform Assoc. 2015 Nov;22(6):1143-7. doi: 10.1093/jamia/ocv047. Epub 2015 Jul 13.


Trajectories and stability of self-reported short sleep duration from adolescence to adulthood.

Hayley AC, Skogen JC, Øverland S, Wold B, Williams LJ, Kennedy GA, Sivertsen B.

J Sleep Res. 2015 Dec;24(6):621-8. doi: 10.1111/jsr.12316. Epub 2015 Jul 14.


Are associations between electronic media use and BMI different across levels of physical activity?

Melkevik O, Haug E, Rasmussen M, Fismen AS, Wold B, Borraccino A, Sigmund E, Balazsi R, Bucksch J, Inchley J, de Matos MG, Samdal O.

BMC Public Health. 2015 May 19;15:497. doi: 10.1186/s12889-015-1810-6.


Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified.

Marinov GK, Wang J, Handler D, Wold BJ, Weng Z, Hannon GJ, Aravin AA, Zamore PD, Brennecke J, Toth KF.

Dev Cell. 2015 Mar 23;32(6):765-71. doi: 10.1016/j.devcel.2015.01.013.


Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.

Kim DH, Marinov GK, Pepke S, Singer ZS, He P, Williams B, Schroth GP, Elowitz MB, Wold BJ.

Cell Stem Cell. 2015 Jan 8;16(1):88-101. doi: 10.1016/j.stem.2014.11.005.


Evaluation of the Coaches Educators training implementation of the PAPA project: A comparison between Norway and France.

Van Hoye A, Larsen T, Sovik M, Wold B, Heuzé JP, Samdal O, Ommundsen Y, Sarrazin P.

Scand J Med Sci Sports. 2015 Oct;25(5):e539-46. doi: 10.1111/sms.12352. Epub 2014 Dec 1.


A ratiometric-based measure of gene co-expression.

Abelin AC, Marinov GK, Williams BA, McCue K, Wold BJ.

BMC Bioinformatics. 2014 Nov 20;15:331. doi: 10.1186/1471-2105-15-331.


A comparative encyclopedia of DNA elements in the mouse genome.

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.

Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.


Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos J, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3366. No abstract available.


Feedback matters: the impact of an intervention by the dean on unprofessional faculty at one medical school.

Dorsey JK, Roberts NK, Wold B.

Acad Med. 2014 Jul;89(7):1032-7. doi: 10.1097/ACM.0000000000000275.


Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: identifying ChIP-quality p300 monoclonal antibodies.

Gasper WC, Marinov GK, Pauli-Behn F, Scott MT, Newberry K, DeSalvo G, Ou S, Myers RM, Vielmetter J, Wold BJ.

Sci Rep. 2014 Jun 12;4:5152. doi: 10.1038/srep05152.


Unprofessional behavior by specialty: a qualitative analysis of six years of student perceptions of medical school faculty.

Roberts NK, Dorsey JK, Wold B.

Med Teach. 2014 Jul;36(7):621-5. doi: 10.3109/0142159X.2014.899690. Epub 2014 May 2.


Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.


The association between smoking and depression from adolescence to adulthood.

Tjora T, Hetland J, Aarø LE, Wold B, Wiium N, Øverland S.

Addiction. 2014 Jun;109(6):1022-30. doi: 10.1111/add.12522. Epub 2014 Mar 25.


Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors.

Marinov GK, Wang YE, Chan D, Wold BJ.

PLoS One. 2014 Jan 20;9(1):e84713. doi: 10.1371/journal.pone.0084713. eCollection 2014.


Large-scale quality analysis of published ChIP-seq data.

Marinov GK, Kundaje A, Park PJ, Wold BJ.

G3 (Bethesda). 2014 Feb 19;4(2):209-23. doi: 10.1534/g3.113.008680.


From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

Marinov GK, Williams BA, McCue K, Schroth GP, Gertz J, Myers RM, Wold BJ.

Genome Res. 2014 Mar;24(3):496-510. doi: 10.1101/gr.161034.113. Epub 2013 Dec 3.


Pathways to adulthood and their precursors and outcomes.

Skogbrott Birkeland M, Leversen I, Torsheim T, Wold B.

Scand J Psychol. 2014 Feb;55(1):26-32. doi: 10.1111/sjop.12087. Epub 2013 Nov 15.


Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps.

Mortazavi A, Pepke S, Jansen C, Marinov GK, Ernst J, Kellis M, Hardison RC, Myers RM, Wold BJ.

Genome Res. 2013 Dec;23(12):2136-48. doi: 10.1101/gr.158261.113. Epub 2013 Oct 29.


Genome-wide analysis reveals coating of the mitochondrial genome by TFAM.

Wang YE, Marinov GK, Wold BJ, Chan DC.

PLoS One. 2013 Aug 26;8(8):e74513. doi: 10.1371/journal.pone.0074513. eCollection 2013.


Transcriptional regulation by nicotine in dopaminergic neurons.

Henley BM, Williams BA, Srinivasan R, Cohen BN, Xiao C, Mackey ED, Wold BJ, Lester HA.

Biochem Pharmacol. 2013 Oct 15;86(8):1074-83. doi: 10.1016/j.bcp.2013.07.031. Epub 2013 Aug 9.


Peer acceptance protects global self-esteem from negative effects of low closeness to parents during adolescence and early adulthood.

Birkeland MS, Breivik K, Wold B.

J Youth Adolesc. 2014 Jan;43(1):70-80. doi: 10.1007/s10964-013-9929-1. Epub 2013 Feb 24.


Dynamic DNA methylation across diverse human cell lines and tissues.

Varley KE, Gertz J, Bowling KM, Parker SL, Reddy TE, Pauli-Behn F, Cross MK, Williams BA, Stamatoyannopoulos JA, Crawford GE, Absher DM, Wold BJ, Myers RM.

Genome Res. 2013 Mar;23(3):555-67. doi: 10.1101/gr.147942.112. Epub 2013 Jan 16.


Using patient-provided information to refine sexually transmitted infection screening criteria among women presenting in the emergency department.

Jenkins WD, Kovach R, Wold BJ, Zahnd WE.

Sex Transm Dis. 2012 Dec;39(12):965-7. doi: 10.1097/OLQ.0b013e31826e882f.


Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide.

Raskatov JA, Nickols NG, Hargrove AE, Marinov GK, Wold B, Dervan PB.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16041-5. doi: 10.1073/pnas.1214267109. Epub 2012 Sep 17.


ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M.

Genome Res. 2012 Sep;22(9):1813-31. doi: 10.1101/gr.136184.111.


RNA editing in the human ENCODE RNA-seq data.

Park E, Williams B, Wold BJ, Mortazavi A.

Genome Res. 2012 Sep;22(9):1626-33. doi: 10.1101/gr.134957.111.


Landscape of transcription in human cells.

Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, King B, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y, Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, Giddings MC, Ruan Y, Wold B, Carninci P, Guigó R, Gingeras TR.

Nature. 2012 Sep 6;489(7414):101-8. doi: 10.1038/nature11233.


An encyclopedia of mouse DNA elements (Mouse ENCODE).

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB.

Genome Biol. 2012 Aug 13;13(8):418. doi: 10.1186/gb-2012-13-8-418.


Late-onset smokers: how many, and associations with health behaviours and socioeconomic status.

Tjora T, Hetland J, Aarø LE, Wold B, Øverland S.

Scand J Public Health. 2012 Aug;40(6):537-43. doi: 10.1177/1403494812454233. Epub 2012 Aug 6.


Transcription factor redundancy and tissue-specific regulation: evidence from functional and physical network connectivity.

Kuntz SG, Williams BA, Sternberg PW, Wold BJ.

Genome Res. 2012 Oct;22(10):1907-19. doi: 10.1101/gr.133306.111. Epub 2012 Jun 22.


Systematic evaluation of factors influencing ChIP-seq fidelity.

Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, Lieb JD, Liu XS.

Nat Methods. 2012 Jun;9(6):609-14. doi: 10.1038/nmeth.1985. Epub 2012 Apr 22.


Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity.

Zhang JA, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV.

Cell. 2012 Apr 13;149(2):467-82. doi: 10.1016/j.cell.2012.01.056.

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