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Items: 21

1.

Long-wavelength native-SAD phasing: opportunities and challenges.

Basu S, Olieric V, Leonarski F, Matsugaki N, Kawano Y, Takashi T, Huang CY, Yamada Y, Vera L, Olieric N, Basquin J, Wojdyla JA, Bunk O, Diederichs K, Yamamoto M, Wang M.

IUCrJ. 2019 Apr 1;6(Pt 3):373-386. doi: 10.1107/S2052252519002756. eCollection 2019 May 1.

2.

Structure of the heterophilic interaction between the nectin-like 4 and nectin-like 1 molecules.

Liu X, An T, Li D, Fan Z, Xiang P, Li C, Ju W, Li J, Hu G, Qin B, Yin B, Wojdyla JA, Wang M, Yuan J, Qiang B, Shu P, Cui S, Peng X.

Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2068-2077. doi: 10.1073/pnas.1810969116. Epub 2019 Jan 23.

PMID:
30674679
3.

Automated data collection and real-time data analysis suite for serial synchrotron crystallography.

Basu S, Kaminski JW, Panepucci E, Huang CY, Warshamanage R, Wang M, Wojdyla JA.

J Synchrotron Radiat. 2019 Jan 1;26(Pt 1):244-252. doi: 10.1107/S1600577518016570. Epub 2019 Jan 1.

4.

Structural characterization of free-state and product-state Mycobacterium tuberculosis methionyl-tRNA synthetase reveals an induced-fit ligand-recognition mechanism.

Wang W, Qin B, Wojdyla JA, Wang M, Gao X, Cui S.

IUCrJ. 2018 Jun 22;5(Pt 4):478-490. doi: 10.1107/S2052252518008217. eCollection 2018 Jul 1.

5.

DA+ data acquisition and analysis software at the Swiss Light Source macromolecular crystallography beamlines.

Wojdyla JA, Kaminski JW, Panepucci E, Ebner S, Wang X, Gabadinho J, Wang M.

J Synchrotron Radiat. 2018 Jan 1;25(Pt 1):293-303. doi: 10.1107/S1600577517014503. Epub 2018 Jan 1.

6.

Crystal structure of Middle East respiratory syndrome coronavirus helicase.

Hao W, Wojdyla JA, Zhao R, Han R, Das R, Zlatev I, Manoharan M, Wang M, Cui S.

PLoS Pathog. 2017 Jun 26;13(6):e1006474. doi: 10.1371/journal.ppat.1006474. eCollection 2017 Jun.

7.

Crystal structure of the receptor binding domain of the spike glycoprotein of human betacoronavirus HKU1.

Ou X, Guan H, Qin B, Mu Z, Wojdyla JA, Wang M, Dominguez SR, Qian Z, Cui S.

Nat Commun. 2017 May 23;8:15216. doi: 10.1038/ncomms15216.

8.

Crystal structure of 2C helicase from enterovirus 71.

Guan H, Tian J, Qin B, Wojdyla JA, Wang B, Zhao Z, Wang M, Cui S.

Sci Adv. 2017 Apr 28;3(4):e1602573. doi: 10.1126/sciadv.1602573. eCollection 2017 Apr.

9.

Structural and biophysical analysis of nuclease protein antibiotics.

Klein A, Wojdyla JA, Joshi A, Josts I, McCaughey LC, Housden NG, Kaminska R, Byron O, Walker D, Kleanthous C.

Biochem J. 2016 Sep 15;473(18):2799-812. doi: 10.1042/BCJ20160544. Epub 2016 Jul 8.

10.

Fast two-dimensional grid and transmission X-ray microscopy scanning methods for visualizing and characterizing protein crystals.

Wojdyla JA, Panepucci E, Martiel I, Ebner S, Huang CY, Caffrey M, Bunk O, Wang M.

J Appl Crystallogr. 2016 May 16;49(Pt 3):944-952. eCollection 2016 Jun 1.

11.

Structure and function of the Escherichia coli Tol-Pal stator protein TolR.

Wojdyla JA, Cutts E, Kaminska R, Papadakos G, Hopper JT, Stansfeld PJ, Staunton D, Robinson CV, Kleanthous C.

J Biol Chem. 2015 Oct 30;290(44):26675-87. doi: 10.1074/jbc.M115.671586. Epub 2015 Sep 9.

12.

Structures of the Ultra-High-Affinity Protein-Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa.

Joshi A, Grinter R, Josts I, Chen S, Wojdyla JA, Lowe ED, Kaminska R, Sharp C, McCaughey L, Roszak AW, Cogdell RJ, Byron O, Walker D, Kleanthous C.

J Mol Biol. 2015 Aug 28;427(17):2852-66. doi: 10.1016/j.jmb.2015.07.014. Epub 2015 Jul 26.

13.

Blind prediction of interfacial water positions in CAPRI.

Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Praneeth Kilambi K, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C, Wodak SJ.

Proteins. 2014 Apr;82(4):620-32. doi: 10.1002/prot.24439. Epub 2013 Nov 23.

14.

Intrinsically disordered protein threads through the bacterial outer-membrane porin OmpF.

Housden NG, Hopper JT, Lukoyanova N, Rodriguez-Larrea D, Wojdyla JA, Klein A, Kaminska R, Bayley H, Saibil HR, Robinson CV, Kleanthous C.

Science. 2013 Jun 28;340(6140):1570-4. doi: 10.1126/science.1237864.

15.

Staphylococcal biofilm-forming protein has a contiguous rod-like structure.

Gruszka DT, Wojdyla JA, Bingham RJ, Turkenburg JP, Manfield IW, Steward A, Leech AP, Geoghegan JA, Foster TJ, Clarke J, Potts JR.

Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):E1011-8. doi: 10.1073/pnas.1119456109. Epub 2012 Apr 9.

16.

Structure of the ultra-high-affinity colicin E2 DNase--Im2 complex.

Wojdyla JA, Fleishman SJ, Baker D, Kleanthous C.

J Mol Biol. 2012 Mar 16;417(1-2):79-94. doi: 10.1016/j.jmb.2012.01.019. Epub 2012 Jan 27.

PMID:
22306467
17.

Nuclease colicins and their immunity proteins.

Papadakos G, Wojdyla JA, Kleanthous C.

Q Rev Biophys. 2012 Feb;45(1):57-103. doi: 10.1017/S0033583511000114. Epub 2011 Nov 16. Review.

PMID:
22085441
18.

Directed epitope delivery across the Escherichia coli outer membrane through the porin OmpF.

Housden NG, Wojdyla JA, Korczynska J, Grishkovskaya I, Kirkpatrick N, Brzozowski AM, Kleanthous C.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21412-7. doi: 10.1073/pnas.1010780107. Epub 2010 Nov 22.

19.

Papain-like protease 1 from transmissible gastroenteritis virus: crystal structure and enzymatic activity toward viral and cellular substrates.

Wojdyla JA, Manolaridis I, van Kasteren PB, Kikkert M, Snijder EJ, Gorbalenya AE, Tucker PA.

J Virol. 2010 Oct;84(19):10063-73. doi: 10.1128/JVI.00898-10. Epub 2010 Jul 28.

20.

Structure of the X (ADRP) domain of nsp3 from feline coronavirus.

Wojdyla JA, Manolaridis I, Snijder EJ, Gorbalenya AE, Coutard B, Piotrowski Y, Hilgenfeld R, Tucker PA.

Acta Crystallogr D Biol Crystallogr. 2009 Dec;65(Pt 12):1292-300. doi: 10.1107/S0907444909040074. Epub 2009 Nov 17.

PMID:
19966415
21.

Structure of the C-terminal domain of nsp4 from feline coronavirus.

Manolaridis I, Wojdyla JA, Panjikar S, Snijder EJ, Gorbalenya AE, Berglind H, Nordlund P, Coutard B, Tucker PA.

Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):839-46. doi: 10.1107/S0907444909018253. Epub 2009 Jul 17.

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