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Items: 34

1.

Artificial fingerprints for cross-comparison of forensic DNA and protein recovery methods.

LeSassier DS, Schulte KQ, Manley TE, Smith AR, Powals ML, Albright NC, Ludolph BC, Weber KL, Woerner AE, Gardner MW, Hewitt FC.

PLoS One. 2019 Oct 3;14(10):e0223170. doi: 10.1371/journal.pone.0223170. eCollection 2019.

2.

A novel phylogenetic approach for de novo discovery of putative nuclear mitochondrial (pNumt) haplotypes.

Smart U, Budowle B, Ambers A, Soares Moura-Neto R, Silva R, Woerner AE.

Forensic Sci Int Genet. 2019 Nov;43:102146. doi: 10.1016/j.fsigen.2019.102146. Epub 2019 Aug 14.

PMID:
31446343
3.

Copan microFLOQ® Direct Swab collection of bloodstains, saliva, and semen on cotton cloth.

Sherier AJ, Kieser RE, Novroski NMM, Wendt FR, King JL, Woerner AE, Ambers A, Garofano P, Budowle B.

Int J Legal Med. 2019 Jun 4. doi: 10.1007/s00414-019-02081-6. [Epub ahead of print]

PMID:
31165261
4.

Compound stutter in D2S1338 and D12S391.

Woerner AE, King JL, Budowle B.

Forensic Sci Int Genet. 2019 Mar;39:50-56. doi: 10.1016/j.fsigen.2018.12.001. Epub 2018 Dec 7.

PMID:
30554027
5.

Forensic human identification with targeted microbiome markers using nearest neighbor classification.

Woerner AE, Novroski NMM, Wendt FR, Ambers A, Wiley R, Schmedes SE, Budowle B.

Forensic Sci Int Genet. 2019 Jan;38:130-139. doi: 10.1016/j.fsigen.2018.10.003. Epub 2018 Oct 5.

PMID:
30396009
6.

Expanding beyond the current core STR loci: An exploration of 73 STR markers with increased diversity for enhanced DNA mixture deconvolution.

Novroski NMM, Wendt FR, Woerner AE, Bus MM, Coble M, Budowle B.

Forensic Sci Int Genet. 2019 Jan;38:121-129. doi: 10.1016/j.fsigen.2018.10.013. Epub 2018 Oct 29.

PMID:
30396008
7.

Microbial enrichment and gene functional categories revealed on the walls of a spent fuel pool of a nuclear power plant.

Silva R, de Almeida DM, Cabral BCA, Dias VHG, Mello ICTE, Ürményi TP, Woerner AE, Neto RSM, Budowle B, Nassar CAG.

PLoS One. 2018 Oct 4;13(10):e0205228. doi: 10.1371/journal.pone.0205228. eCollection 2018.

8.

Potential highly polymorphic short tandem repeat markers for enhanced forensic identity testing.

Novroski NMM, Woerner AE, Budowle B.

Forensic Sci Int Genet. 2018 Nov;37:162-171. doi: 10.1016/j.fsigen.2018.08.011. Epub 2018 Aug 23.

PMID:
30176438
9.

The role of phylogenetically conserved elements in shaping patterns of human genomic diversity.

Woerner AE, Veeramah KR, Watkins JC, Hammer MF.

Mol Biol Evol. 2018 Aug 3. doi: 10.1093/molbev/msy145. [Epub ahead of print]

10.

Evaluation of the precision ID mtDNA whole genome panel on two massively parallel sequencing systems.

Woerner AE, Ambers A, Wendt FR, King JL, Moura-Neto RS, Silva R, Budowle B.

Forensic Sci Int Genet. 2018 Sep;36:213-224. doi: 10.1016/j.fsigen.2018.07.015. Epub 2018 Jul 18.

PMID:
30059903
11.

Modeling SNP array ascertainment with Approximate Bayesian Computation for demographic inference.

Quinto-Cortés CD, Woerner AE, Watkins JC, Hammer MF.

Sci Rep. 2018 Jul 5;8(1):10209. doi: 10.1038/s41598-018-28539-y.

12.

Exploring the 1000 Genomes Project haplotype reporting for the CYP2D6 pharmacogene.

Wendt FR, Woerner AE, Sajantila A, Moura-Neto RS, Budowle B.

Int J Legal Med. 2019 May;133(3):807-810. doi: 10.1007/s00414-018-1874-9. Epub 2018 Jun 2. No abstract available.

PMID:
29860596
13.

Insertion within the flanking region of the D10S1237 locus.

Novroski NMM, Woerner AE, Budowle B.

Forensic Sci Int Genet. 2018 Jul;35:e4-e6. doi: 10.1016/j.fsigen.2018.04.008. Epub 2018 Apr 27. No abstract available.

PMID:
29729851
14.

Flanking Variation Influences Rates of Stutter in Simple Repeats.

Woerner AE, King JL, Budowle B.

Genes (Basel). 2017 Nov 17;8(11). pii: E329. doi: 10.3390/genes8110329.

15.

Full-gene haplotypes refine CYP2D6 metabolizer phenotype inferences.

Wendt FR, Sajantila A, Moura-Neto RS, Woerner AE, Budowle B.

Int J Legal Med. 2018 Jul;132(4):1007-1024. doi: 10.1007/s00414-017-1709-0. Epub 2017 Oct 26.

PMID:
29075918
16.

Targeted sequencing of clade-specific markers from skin microbiomes for forensic human identification.

Schmedes SE, Woerner AE, Novroski NMM, Wendt FR, King JL, Stephens KM, Budowle B.

Forensic Sci Int Genet. 2018 Jan;32:50-61. doi: 10.1016/j.fsigen.2017.10.004. Epub 2017 Oct 18.

PMID:
29065388
17.

Forensic Human Identification Using Skin Microbiomes.

Schmedes SE, Woerner AE, Budowle B.

Appl Environ Microbiol. 2017 Oct 31;83(22). pii: e01672-17. doi: 10.1128/AEM.01672-17. Print 2017 Nov 15.

18.

Fast STR allele identification with STRait Razor 3.0.

Woerner AE, King JL, Budowle B.

Forensic Sci Int Genet. 2017 Sep;30:18-23. doi: 10.1016/j.fsigen.2017.05.008. Epub 2017 Jun 1.

PMID:
28605651
19.

Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 May;26(5):717.1. doi: 10.1101/gr.206524.116. No abstract available.

20.

Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 Mar;26(3):291-300. doi: 10.1101/gr.196634.115. Epub 2016 Feb 17. Erratum in: Genome Res. 2016 May;26(5):717.1.

21.

The Time Scale of Recombination Rate Evolution in Great Apes.

Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF; Great Ape Genome Project, Bustamante CD, Hammer MF, Wall JD.

Mol Biol Evol. 2016 Apr;33(4):928-45. doi: 10.1093/molbev/msv331. Epub 2015 Dec 15.

22.

Extreme selective sweeps independently targeted the X chromosomes of the great apes.

Nam K, Munch K, Hobolth A, Dutheil JY, Veeramah KR, Woerner AE, Hammer MF; Great Ape Genome Diversity Project, Mailund T, Schierup MH.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):6413-8. doi: 10.1073/pnas.1419306112. Epub 2015 May 4.

23.

Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach.

Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF.

Genetics. 2015 May;200(1):295-308. doi: 10.1534/genetics.115.174425. Epub 2015 Mar 12.

24.

Inference of gorilla demographic and selective history from whole-genome sequence data.

McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF.

Mol Biol Evol. 2015 Mar;32(3):600-12. doi: 10.1093/molbev/msu394. Epub 2014 Dec 21.

25.

Gibbon genome and the fast karyotype evolution of small apes.

Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA.

Nature. 2014 Sep 11;513(7517):195-201. doi: 10.1038/nature13679.

26.

Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans.

Veeramah KR, Gutenkunst RN, Woerner AE, Watkins JC, Hammer MF.

Mol Biol Evol. 2014 Sep;31(9):2267-82. doi: 10.1093/molbev/msu166. Epub 2014 May 15.

27.

Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.

28.

An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree.

Mendez FL, Krahn T, Schrack B, Krahn AM, Veeramah KR, Woerner AE, Fomine FL, Bradman N, Thomas MG, Karafet TM, Hammer MF.

Am J Hum Genet. 2013 Mar 7;92(3):454-9. doi: 10.1016/j.ajhg.2013.02.002. Epub 2013 Feb 28. Erratum in: Am J Hum Genet. 2013 Apr 4;92(4):637.

29.

Genetic evidence for archaic admixture in Africa.

Hammer MF, Woerner AE, Mendez FL, Watkins JC, Wall JD.

Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15123-8. doi: 10.1073/pnas.1109300108. Epub 2011 Sep 6.

30.

The ratio of human X chromosome to autosome diversity is positively correlated with genetic distance from genes.

Hammer MF, Woerner AE, Mendez FL, Watkins JC, Cox MP, Wall JD.

Nat Genet. 2010 Oct;42(10):830-1. doi: 10.1038/ng.651. Epub 2010 Aug 29.

PMID:
20802480
31.

Autosomal resequence data reveal Late Stone Age signals of population expansion in sub-Saharan African foraging and farming populations.

Cox MP, Morales DA, Woerner AE, Sozanski J, Wall JD, Hammer MF.

PLoS One. 2009 Jul 29;4(7):e6366. doi: 10.1371/journal.pone.0006366.

32.

Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow.

Cox MP, Woerner AE, Wall JD, Hammer MF.

BMC Genet. 2008 Nov 27;9:76. doi: 10.1186/1471-2156-9-76.

33.

Sex-biased evolutionary forces shape genomic patterns of human diversity.

Hammer MF, Mendez FL, Cox MP, Woerner AE, Wall JD.

PLoS Genet. 2008 Sep 26;4(9):e1000202. doi: 10.1371/journal.pgen.1000202.

34.

Recombination-filtered genomic datasets by information maximization.

Woerner AE, Cox MP, Hammer MF.

Bioinformatics. 2007 Jul 15;23(14):1851-3. Epub 2007 May 22.

PMID:
17519249

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