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Artificial fingerprints for cross-comparison of forensic DNA and protein recovery methods.

LeSassier DS, Schulte KQ, Manley TE, Smith AR, Powals ML, Albright NC, Ludolph BC, Weber KL, Woerner AE, Gardner MW, Hewitt FC.

PLoS One. 2019 Oct 3;14(10):e0223170. doi: 10.1371/journal.pone.0223170. eCollection 2019.


A novel phylogenetic approach for de novo discovery of putative nuclear mitochondrial (pNumt) haplotypes.

Smart U, Budowle B, Ambers A, Soares Moura-Neto R, Silva R, Woerner AE.

Forensic Sci Int Genet. 2019 Nov;43:102146. doi: 10.1016/j.fsigen.2019.102146. Epub 2019 Aug 14.


Infectious adverse events in children with Juvenile Idiopathic Arthritis treated with Biological Agents in a real-life setting: Data from the JIRcohorte.

Dumaine C, Bekkar S, Belot A, Cabrera N, Malik S, von Scheven A, Carbasse A, Woerner A, Wouters C, Bouayed K, Pillet P, Schroeder S, Hofer M, Hentgen V.

Joint Bone Spine. 2020 Jan;87(1):49-55. doi: 10.1016/j.jbspin.2019.07.011. Epub 2019 Jul 29.


Copan microFLOQ® Direct Swab collection of bloodstains, saliva, and semen on cotton cloth.

Sherier AJ, Kieser RE, Novroski NMM, Wendt FR, King JL, Woerner AE, Ambers A, Garofano P, Budowle B.

Int J Legal Med. 2020 Jan;134(1):45-54. doi: 10.1007/s00414-019-02081-6. Epub 2019 Jun 4.


A protein quality control pathway regulated by linear ubiquitination.

van Well EM, Bader V, Patra M, Sánchez-Vicente A, Meschede J, Furthmann N, Schnack C, Blusch A, Longworth J, Petrasch-Parwez E, Mori K, Arzberger T, Trümbach D, Angersbach L, Showkat C, Sehr DA, Berlemann LA, Goldmann P, Clement AM, Behl C, Woerner AC, Saft C, Wurst W, Haass C, Ellrichmann G, Gold R, Dittmar G, Hipp MS, Hartl FU, Tatzelt J, Winklhofer KF.

EMBO J. 2019 May 2;38(9). pii: e100730. doi: 10.15252/embj.2018100730. Epub 2019 Mar 18.


Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands.

Haller F, Bieg M, Will R, Körner C, Weichenhan D, Bott A, Ishaque N, Lutsik P, Moskalev EA, Mueller SK, Bähr M, Woerner A, Kaiser B, Scherl C, Haderlein M, Kleinheinz K, Fietkau R, Iro H, Eils R, Hartmann A, Plass C, Wiemann S, Agaimy A.

Nat Commun. 2019 Jan 21;10(1):368. doi: 10.1038/s41467-018-08069-x.


Compound stutter in D2S1338 and D12S391.

Woerner AE, King JL, Budowle B.

Forensic Sci Int Genet. 2019 Mar;39:50-56. doi: 10.1016/j.fsigen.2018.12.001. Epub 2018 Dec 7.


Arthritis and arthralgia as an adverse event following immunization: A systematic literature review.

Panozzo CA, Pourmalek F, Brauchli Pernus Y, Pileggi GS, Woerner A, Bonhoeffer J; Brighton Collaboration Aseptic Arthritis Working Group.

Vaccine. 2019 Jan 7;37(2):372-383. doi: 10.1016/j.vaccine.2018.06.067. Epub 2018 Nov 28.


Forensic human identification with targeted microbiome markers using nearest neighbor classification.

Woerner AE, Novroski NMM, Wendt FR, Ambers A, Wiley R, Schmedes SE, Budowle B.

Forensic Sci Int Genet. 2019 Jan;38:130-139. doi: 10.1016/j.fsigen.2018.10.003. Epub 2018 Oct 5.


Expanding beyond the current core STR loci: An exploration of 73 STR markers with increased diversity for enhanced DNA mixture deconvolution.

Novroski NMM, Wendt FR, Woerner AE, Bus MM, Coble M, Budowle B.

Forensic Sci Int Genet. 2019 Jan;38:121-129. doi: 10.1016/j.fsigen.2018.10.013. Epub 2018 Oct 29.


Acute aseptic arthritis: Case definition & guidelines for data collection, analysis, and presentation of immunisation safety data.

Woerner A, Pourmalek F, Panozzo C, Pileggi G, Hudson M, Caric A, Abraham S, Varricchio F, Velasco C, Oleske J, Bauwens J, Bonhoeffer J; Brighton Collaboration Acute Aseptic Arthritis Working Group.

Vaccine. 2019 Jan 7;37(2):384-391. doi: 10.1016/j.vaccine.2017.08.087. Epub 2018 Oct 17. Review. No abstract available.


Partial 5p Deletion and Partial 5q Duplication in a Patient with Multiple Congenital Anomalies: A Two-Step Mechanism in Chromosomal Rearrangement Mediated by Non-Allelic Homologous Recombination.

Ou ZZ, Kochmar S, Yatsenko SA, Woerner AC, Acquaro R, Ortiz D, Surti U, Hu J.

Cytogenet Genome Res. 2018 Oct 5. doi: 10.1159/000493381. [Epub ahead of print]


Microbial enrichment and gene functional categories revealed on the walls of a spent fuel pool of a nuclear power plant.

Silva R, de Almeida DM, Cabral BCA, Dias VHG, Mello ICTE, Ürményi TP, Woerner AE, Neto RSM, Budowle B, Nassar CAG.

PLoS One. 2018 Oct 4;13(10):e0205228. doi: 10.1371/journal.pone.0205228. eCollection 2018.


Safety of biological agents in paediatric rheumatic diseases: A real-life multicenter retrospective study using the JIRcohorte database.

Cabrera N, Lega JC, Kassai B, Wouters C, Kondi A, Cannizzaro E, Woerner A, Chausset A, Roethlisberger S, Jeanneret C, Aeschlimann F, Malik S, Duquesne A, Kaiser D, Higel L, Maes A, Berthet G, Hentgen V, Kone-Paut I, Belot A, Hofer M.

Joint Bone Spine. 2019 May;86(3):343-350. doi: 10.1016/j.jbspin.2018.08.003. Epub 2018 Sep 7.


Potential highly polymorphic short tandem repeat markers for enhanced forensic identity testing.

Novroski NMM, Woerner AE, Budowle B.

Forensic Sci Int Genet. 2018 Nov;37:162-171. doi: 10.1016/j.fsigen.2018.08.011. Epub 2018 Aug 23.


The Role of Phylogenetically Conserved Elements in Shaping Patterns of Human Genomic Diversity.

Woerner AE, Veeramah KR, Watkins JC, Hammer MF.

Mol Biol Evol. 2018 Sep 1;35(9):2284-2295. doi: 10.1093/molbev/msy145.


Evaluation of the precision ID mtDNA whole genome panel on two massively parallel sequencing systems.

Woerner AE, Ambers A, Wendt FR, King JL, Moura-Neto RS, Silva R, Budowle B.

Forensic Sci Int Genet. 2018 Sep;36:213-224. doi: 10.1016/j.fsigen.2018.07.015. Epub 2018 Jul 18.


Modeling SNP array ascertainment with Approximate Bayesian Computation for demographic inference.

Quinto-Cortés CD, Woerner AE, Watkins JC, Hammer MF.

Sci Rep. 2018 Jul 5;8(1):10209. doi: 10.1038/s41598-018-28539-y.


Exploring the 1000 Genomes Project haplotype reporting for the CYP2D6 pharmacogene.

Wendt FR, Woerner AE, Sajantila A, Moura-Neto RS, Budowle B.

Int J Legal Med. 2019 May;133(3):807-810. doi: 10.1007/s00414-018-1874-9. Epub 2018 Jun 2. No abstract available.


Insertion within the flanking region of the D10S1237 locus.

Novroski NMM, Woerner AE, Budowle B.

Forensic Sci Int Genet. 2018 Jul;35:e4-e6. doi: 10.1016/j.fsigen.2018.04.008. Epub 2018 Apr 27. No abstract available.


Clinical and Imaging Predictors of Surgical Splenorenal Shunt Dysfunction in Pediatric Patients.

Woerner A, Shivaram G, Koo KSH, Hsu EK, Dick AAS, Monroe EJ.

J Pediatr Gastroenterol Nutr. 2018 Jun;66(6):e139-e145. doi: 10.1097/MPG.0000000000001931.


Potency determination of inactivated H7 influenza vaccines using monoclonal antibody-based ELISA and biolayer interferometry assays.

Vasudevan A, Woerner A, Schmeisser F, Verma S, Williams O, Weir JP.

Influenza Other Respir Viruses. 2018 Mar;12(2):250-258. doi: 10.1111/irv.12528. Epub 2017 Dec 15.


Flanking Variation Influences Rates of Stutter in Simple Repeats.

Woerner AE, King JL, Budowle B.

Genes (Basel). 2017 Nov 17;8(11). pii: E329. doi: 10.3390/genes8110329.


Full-gene haplotypes refine CYP2D6 metabolizer phenotype inferences.

Wendt FR, Sajantila A, Moura-Neto RS, Woerner AE, Budowle B.

Int J Legal Med. 2018 Jul;132(4):1007-1024. doi: 10.1007/s00414-017-1709-0. Epub 2017 Oct 26.


Targeted sequencing of clade-specific markers from skin microbiomes for forensic human identification.

Schmedes SE, Woerner AE, Novroski NMM, Wendt FR, King JL, Stephens KM, Budowle B.

Forensic Sci Int Genet. 2018 Jan;32:50-61. doi: 10.1016/j.fsigen.2017.10.004. Epub 2017 Oct 18.


Forensic Human Identification Using Skin Microbiomes.

Schmedes SE, Woerner AE, Budowle B.

Appl Environ Microbiol. 2017 Oct 31;83(22). pii: e01672-17. doi: 10.1128/AEM.01672-17. Print 2017 Nov 15.


Evaluation of InnoTyper® 21 in a sample of Rio de Janeiro population as an alternative forensic panel.

Moura-Neto RS, Mello ICT, Silva R, Maette APC, Bottino CG, Woerner A, King J, Wendt F, Budowle B.

Int J Legal Med. 2018 Jan;132(1):149-151. doi: 10.1007/s00414-017-1642-2. Epub 2017 Jul 26.


Evaluation of Deformable Image Registration-Based Contour Propagation From Planning CT to Cone-Beam CT.

Woerner AJ, Choi M, Harkenrider MM, Roeske JC, Surucu M.

Technol Cancer Res Treat. 2017 Jan 1:1533034617697242. doi: 10.1177/1533034617697242. [Epub ahead of print]


Fast STR allele identification with STRait Razor 3.0.

Woerner AE, King JL, Budowle B.

Forensic Sci Int Genet. 2017 Sep;30:18-23. doi: 10.1016/j.fsigen.2017.05.008. Epub 2017 Jun 1.


Effect of Biologic Therapy on Clinical and Laboratory Features of Macrophage Activation Syndrome Associated With Systemic Juvenile Idiopathic Arthritis.

Schulert GS, Minoia F, Bohnsack J, Cron RQ, Hashad S, KonÉ-Paut I, Kostik M, Lovell D, Maritsi D, Nigrovic PA, Pal P, Ravelli A, Shimizu M, Stanevicha V, Vastert S, Woerner A, de Benedetti F, Grom AA.

Arthritis Care Res (Hoboken). 2018 Mar;70(3):409-419. doi: 10.1002/acr.23277. Epub 2018 Jan 30.


IgA vasculitis (Henoch-Schönlein): Case definition andguidelines for data collection, analysis, and presentation of immunisation safety data.

Woerner A, Rudin C, Bonetto C, Santuccio C, Ozen S, Wise RP, Chandler R, Bonhoeffer J; Brighton Collaboration lgA Vasclitis (Henoch–Schönlein) Working Group.

Vaccine. 2017 Mar 13;35(11):1559-1566. doi: 10.1016/j.vaccine.2016.09.024. Epub 2016 Dec 26. No abstract available.


Clinical course and therapeutic approach to varicella zoster virus infection in children with rheumatic autoimmune diseases under immunosuppression.

Leuvenink R, Aeschlimann F, Baer W, Berthet G, Cannizzaro E, Hofer M, Kaiser D, Schroeder S, Heininger U, Woerner A.

Pediatr Rheumatol Online J. 2016 Jun 2;14(1):34. doi: 10.1186/s12969-016-0095-3.


Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 May;26(5):717.1. doi: 10.1101/gr.206524.116. No abstract available.


Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 Mar;26(3):291-300. doi: 10.1101/gr.196634.115. Epub 2016 Feb 17. Erratum in: Genome Res. 2016 May;26(5):717.1.


The Time Scale of Recombination Rate Evolution in Great Apes.

Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF; Great Ape Genome Project, Bustamante CD, Hammer MF, Wall JD.

Mol Biol Evol. 2016 Apr;33(4):928-45. doi: 10.1093/molbev/msv331. Epub 2015 Dec 15.


Cytoplasmic protein aggregates interfere with nucleocytoplasmic transport of protein and RNA.

Woerner AC, Frottin F, Hornburg D, Feng LR, Meissner F, Patra M, Tatzelt J, Mann M, Winklhofer KF, Hartl FU, Hipp MS.

Science. 2016 Jan 8;351(6269):173-6. doi: 10.1126/science.aad2033. Epub 2015 Dec 3.


Biological treatment in systemic juvenile idiopathic arthritis: achievement of inactive disease or clinical remission on a first, second or third biological agent.

Woerner A, Uettwiller F, Melki I, Mouy R, Wouters C, Bader-Meunier B, Quartier P.

RMD Open. 2015 Apr 30;1(1):e000036. doi: 10.1136/rmdopen-2014-000036. eCollection 2015.


A multi-institutional study to assess adherence to lung stereotactic body radiotherapy planning goals.

Woerner A, Roeske JC, Harkenrider MM, Fan J, Aydogan B, Koshy M, Laureckas R, Vali F, Campana M, Surucu M.

Med Phys. 2015 Aug;42(8):4629-35. doi: 10.1118/1.4926551.


Clinical utility of a next generation sequencing panel assay for Marfan and Marfan-like syndromes featuring aortopathy.

Wooderchak-Donahue W, VanSant-Webb C, Tvrdik T, Plant P, Lewis T, Stocks J, Raney JA, Meyers L, Berg A, Rope AF, Yetman AT, Bleyl SB, Mesley R, Bull DA, Collins RT, Ojeda MM, Roberts A, Lacro R, Woerner A, Stoler J, Bayrak-Toydemir P.

Am J Med Genet A. 2015 Aug;167A(8):1747-57. doi: 10.1002/ajmg.a.37085. Epub 2015 May 5.


Extreme selective sweeps independently targeted the X chromosomes of the great apes.

Nam K, Munch K, Hobolth A, Dutheil JY, Veeramah KR, Woerner AE, Hammer MF; Great Ape Genome Diversity Project, Mailund T, Schierup MH.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):6413-8. doi: 10.1073/pnas.1419306112. Epub 2015 May 4.


Complications of systemic juvenile idiopathic arthritis: risk factors and management recommendations.

Woerner A, von Scheven-Gête A, Cimaz R, Hofer M.

Expert Rev Clin Immunol. 2015 May;11(5):575-88. doi: 10.1586/1744666X.2015.1032257. Epub 2015 Apr 4. Review.


Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach.

Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF.

Genetics. 2015 May;200(1):295-308. doi: 10.1534/genetics.115.174425. Epub 2015 Mar 12.


Neuroborreliosis-Associated Cerebral Vasculitis: An Uncommon Manifestation of Lyme Disease in a 9-Year-Old Boy.

Lenherr N, Walther K, Schneider J, Woerner A, Hess M.

Glob Pediatr Health. 2015 Aug 20;2:2333794X15601840. doi: 10.1177/2333794X15601840. eCollection 2015. No abstract available.


Inference of gorilla demographic and selective history from whole-genome sequence data.

McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF.

Mol Biol Evol. 2015 Mar;32(3):600-12. doi: 10.1093/molbev/msu394. Epub 2014 Dec 21.


MicroRNA-206 functions as a pleiotropic modulator of cell proliferation, invasion and lymphangiogenesis in pancreatic adenocarcinoma by targeting ANXA2 and KRAS genes.

Keklikoglou I, Hosaka K, Bender C, Bott A, Koerner C, Mitra D, Will R, Woerner A, Muenstermann E, Wilhelm H, Cao Y, Wiemann S.

Oncogene. 2015 Sep 10;34(37):4867-78. doi: 10.1038/onc.2014.408. Epub 2014 Dec 15.


Gibbon genome and the fast karyotype evolution of small apes.

Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA.

Nature. 2014 Sep 11;513(7517):195-201. doi: 10.1038/nature13679.


Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans.

Veeramah KR, Gutenkunst RN, Woerner AE, Watkins JC, Hammer MF.

Mol Biol Evol. 2014 Sep;31(9):2267-82. doi: 10.1093/molbev/msu166. Epub 2014 May 15.


Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.


Infections in children treated with biological agents.

Woerner A, Ritz N.

Pediatr Infect Dis J. 2013 Mar;32(3):284-8. doi: 10.1097/INF.0b013e3182833cbb. Review. No abstract available.


An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree.

Mendez FL, Krahn T, Schrack B, Krahn AM, Veeramah KR, Woerner AE, Fomine FL, Bradman N, Thomas MG, Karafet TM, Hammer MF.

Am J Hum Genet. 2013 Mar 7;92(3):454-9. doi: 10.1016/j.ajhg.2013.02.002. Epub 2013 Feb 28. Erratum in: Am J Hum Genet. 2013 Apr 4;92(4):637.

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