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Items: 27

1.

Biodegradation of synthetic polymers in soils: Tracking carbon into CO2 and microbial biomass.

Zumstein MT, Schintlmeister A, Nelson TF, Baumgartner R, Woebken D, Wagner M, Kohler HE, McNeill K, Sander M.

Sci Adv. 2018 Jul 25;4(7):eaas9024. doi: 10.1126/sciadv.aas9024. eCollection 2018 Jul.

2.

Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP - A Bioinformatics Pipeline for Analyzing nifH Amplicon Data.

Angel R, Nepel M, Panhölzl C, Schmidt H, Herbold CW, Eichorst SA, Woebken D.

Front Microbiol. 2018 Apr 30;9:703. doi: 10.3389/fmicb.2018.00703. eCollection 2018.

3.

Peatland Acidobacteria with a dissimilatory sulfur metabolism.

Hausmann B, Pelikan C, Herbold CW, Köstlbacher S, Albertsen M, Eichorst SA, Glavina Del Rio T, Huemer M, Nielsen PH, Rattei T, Stingl U, Tringe SG, Trojan D, Wentrup C, Woebken D, Pester M, Loy A.

ISME J. 2018 Jun;12(7):1729-1742. doi: 10.1038/s41396-018-0077-1. Epub 2018 Feb 23.

4.

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments.

Eichorst SA, Trojan D, Roux S, Herbold C, Rattei T, Woebken D.

Environ Microbiol. 2018 Mar;20(3):1041-1063. doi: 10.1111/1462-2920.14043. Epub 2018 Mar 12.

5.

Application of stable-isotope labelling techniques for the detection of active diazotrophs.

Angel R, Panhölzl C, Gabriel R, Herbold C, Wanek W, Richter A, Eichorst SA, Woebken D.

Environ Microbiol. 2018 Jan;20(1):44-61. doi: 10.1111/1462-2920.13954. Epub 2017 Dec 15.

6.

Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria.

Everroad RC, Stuart RK, Bebout BM, Detweiler AM, Lee JZ, Woebken D, Prufert-Bebout L, Pett-Ridge J.

Stand Genomic Sci. 2016 Aug 24;11(1):53. doi: 10.1186/s40793-016-0174-6. eCollection 2016.

7.

Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils.

Eichorst SA, Strasser F, Woyke T, Schintlmeister A, Wagner M, Woebken D.

FEMS Microbiol Ecol. 2015 Oct;91(10). pii: fiv106. doi: 10.1093/femsec/fiv106. Epub 2015 Aug 30.

8.

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells.

Berry D, Mader E, Lee TK, Woebken D, Wang Y, Zhu D, Palatinszky M, Schintlmeister A, Schmid MC, Hanson BT, Shterzer N, Mizrahi I, Rauch I, Decker T, Bocklitz T, Popp J, Gibson CM, Fowler PW, Huang WE, Wagner M.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):E194-203. doi: 10.1073/pnas.1420406112. Epub 2014 Dec 30.

9.

Revisiting N₂ fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach.

Woebken D, Burow LC, Behnam F, Mayali X, Schintlmeister A, Fleming ED, Prufert-Bebout L, Singer SW, Cortés AL, Hoehler TM, Pett-Ridge J, Spormann AM, Wagner M, Weber PK, Bebout BM.

ISME J. 2015 Feb;9(2):485-96. doi: 10.1038/ismej.2014.144. Epub 2014 Oct 10.

10.

Bacteria from diverse habitats colonize and compete in the mouse gut.

Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, Cantarel BL, Lombard V, Henrissat B, Knight R, Gordon JI.

Cell. 2014 Oct 9;159(2):253-66. doi: 10.1016/j.cell.2014.09.008. Epub 2014 Oct 2.

11.

Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community.

Burow LC, Woebken D, Marshall IP, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Bebout BM, Weber PK, Hoehler TM.

Geobiology. 2014 May;12(3):221-30. doi: 10.1111/gbi.12080.

PMID:
24730641
12.

Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats.

Lee JZ, Burow LC, Woebken D, Everroad RC, Kubo MD, Spormann AM, Weber PK, Pett-Ridge J, Bebout BM, Hoehler TM.

Front Microbiol. 2014 Feb 26;5:61. doi: 10.3389/fmicb.2014.00061. eCollection 2014.

13.

Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1.

Everroad RC, Woebken D, Singer SW, Burow LC, Kyrpides N, Woyke T, Goodwin L, Detweiler A, Prufert-Bebout L, Pett-Ridge J.

Genome Announc. 2013 Aug 1;1(4). pii: e00527-13. doi: 10.1128/genomeA.00527-13.

14.

Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.

Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW.

ISME J. 2013 Apr;7(4):817-29. doi: 10.1038/ismej.2012.150. Epub 2012 Nov 29.

15.

The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium.

van de Vossenberg J, Woebken D, Maalcke WJ, Wessels HJ, Dutilh BE, Kartal B, Janssen-Megens EM, Roeselers G, Yan J, Speth D, Gloerich J, Geerts W, van der Biezen E, Pluk W, Francoijs KJ, Russ L, Lam P, Malfatti SA, Tringe SG, Haaijer SC, Op den Camp HJ, Stunnenberg HG, Amann R, Kuypers MM, Jetten MS.

Environ Microbiol. 2013 May;15(5):1275-89. doi: 10.1111/j.1462-2920.2012.02774.x. Epub 2012 May 9.

16.

Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis.

Woebken D, Burow LC, Prufert-Bebout L, Bebout BM, Hoehler TM, Pett-Ridge J, Spormann AM, Weber PK, Singer SW.

ISME J. 2012 Jul;6(7):1427-39. doi: 10.1038/ismej.2011.200. Epub 2012 Jan 12.

17.

Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay.

Burow LC, Woebken D, Bebout BM, McMurdie PJ, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Weber PK, Hoehler TM.

ISME J. 2012 Apr;6(4):863-74. doi: 10.1038/ismej.2011.142. Epub 2011 Oct 20.

18.

Microbial nitrate-dependent cyclohexane degradation coupled with anaerobic ammonium oxidation.

Musat F, Wilkes H, Behrends A, Woebken D, Widdel F.

ISME J. 2010 Oct;4(10):1290-301. doi: 10.1038/ismej.2010.50. Epub 2010 Apr 22.

PMID:
20410937
19.

Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany).

Hamersley MR, Woebken D, Boehrer B, Schultze M, Lavik G, Kuypers MM.

Syst Appl Microbiol. 2009 Dec;32(8):571-82. doi: 10.1016/j.syapm.2009.07.009. Epub 2009 Aug 28.

PMID:
19716251
20.

Complex nitrogen cycling in the sponge Geodia barretti.

Hoffmann F, Radax R, Woebken D, Holtappels M, Lavik G, Rapp HT, Schläppy ML, Schleper C, Kuypers MM.

Environ Microbiol. 2009 Sep;11(9):2228-43. doi: 10.1111/j.1462-2920.2009.01944.x. Epub 2009 May 18.

PMID:
19453700
21.

Revising the nitrogen cycle in the Peruvian oxygen minimum zone.

Lam P, Lavik G, Jensen MM, van de Vossenberg J, Schmid M, Woebken D, Gutiérrez D, Amann R, Jetten MS, Kuypers MM.

Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4752-7. doi: 10.1073/pnas.0812444106. Epub 2009 Mar 2.

22.

Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria.

Schmid MC, Hooper AB, Klotz MG, Woebken D, Lam P, Kuypers MM, Pommerening-Roeser A, Op den Camp HJ, Jetten MS.

Environ Microbiol. 2008 Nov;10(11):3140-9. doi: 10.1111/j.1462-2920.2008.01732.x.

PMID:
18973625
23.

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones.

Woebken D, Lam P, Kuypers MM, Naqvi SW, Kartal B, Strous M, Jetten MS, Fuchs BM, Amann R.

Environ Microbiol. 2008 Nov;10(11):3106-19. doi: 10.1111/j.1462-2920.2008.01640.x. Epub 2008 May 27. Erratum in: Environ Microbiol. 2010 Aug;12(8):2384.

PMID:
18510553
24.

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.

Woebken D, Teeling H, Wecker P, Dumitriu A, Kostadinov I, Delong EF, Amann R, Glöckner FO.

ISME J. 2007 Sep;1(5):419-35. Epub 2007 Aug 9.

PMID:
18043661
25.

Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system.

Woebken D, Fuchs BM, Kuypers MM, Amann R.

Appl Environ Microbiol. 2007 Jul;73(14):4648-57. Epub 2007 May 25.

26.

Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

Bauer M, Kube M, Teeling H, Richter M, Lombardot T, Allers E, Würdemann CA, Quast C, Kuhl H, Knaust F, Woebken D, Bischof K, Mussmann M, Choudhuri JV, Meyer F, Reinhardt R, Amann RI, Glöckner FO.

Environ Microbiol. 2006 Dec;8(12):2201-13.

PMID:
17107561
27.

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation.

Kuypers MM, Lavik G, Woebken D, Schmid M, Fuchs BM, Amann R, Jørgensen BB, Jetten MS.

Proc Natl Acad Sci U S A. 2005 May 3;102(18):6478-83. Epub 2005 Apr 20.

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