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Items: 1 to 50 of 154

1.

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.

Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkūnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Honorato RV, Bonvin AMJJ, Wodak SJ.

Proteins. 2019 Dec;87(12):1200-1221. doi: 10.1002/prot.25838. Epub 2019 Oct 25.

PMID:
31612567
2.

The Balancing Act of Intrinsically Disordered Proteins: Enabling Functional Diversity while Minimizing Promiscuity.

Macossay-Castillo M, Marvelli G, Guharoy M, Jain A, Kihara D, Tompa P, Wodak SJ.

J Mol Biol. 2019 Apr 5;431(8):1650-1670. doi: 10.1016/j.jmb.2019.03.008. Epub 2019 Mar 13.

3.

Allostery in Its Many Disguises: From Theory to Applications.

Wodak SJ, Paci E, Dokholyan NV, Berezovsky IN, Horovitz A, Li J, Hilser VJ, Bahar I, Karanicolas J, Stock G, Hamm P, Stote RH, Eberhardt J, Chebaro Y, Dejaegere A, Cecchini M, Changeux JP, Bolhuis PG, Vreede J, Faccioli P, Orioli S, Ravasio R, Yan L, Brito C, Wyart M, Gkeka P, Rivalta I, Palermo G, McCammon JA, Panecka-Hofman J, Wade RC, Di Pizio A, Niv MY, Nussinov R, Tsai CJ, Jang H, Padhorny D, Kozakov D, McLeish T.

Structure. 2019 Apr 2;27(4):566-578. doi: 10.1016/j.str.2019.01.003. Epub 2019 Feb 7. Review.

4.

De novo missense variants in RAC3 cause a novel neurodevelopmental syndrome.

Costain G, Callewaert B, Gabriel H, Tan TY, Walker S, Christodoulou J, Lazar T, Menten B, Orkin J, Sadedin S, Snell M, Vanlander A, Vergult S, White SM, Scherer SW, Hayeems RZ, Blaser S, Wodak SJ, Chitayat D, Marshall CR, Meyn MS.

Genet Med. 2019 Apr;21(4):1021-1026. doi: 10.1038/s41436-018-0323-y. Epub 2018 Oct 8.

PMID:
30293988
5.

Interplay of self-association and conformational flexibility in regulating protein function.

Garton M, MacKinnon SS, Malevanets A, Wodak SJ.

Philos Trans R Soc Lond B Biol Sci. 2018 Jun 19;373(1749). pii: 20170190. doi: 10.1098/rstb.2017.0190. Review.

6.

The challenge of modeling protein assemblies: the CASP12-CAPRI experiment.

Lensink MF, Velankar S, Baek M, Heo L, Seok C, Wodak SJ.

Proteins. 2018 Mar;86 Suppl 1:257-273. doi: 10.1002/prot.25419. Epub 2017 Nov 26.

PMID:
29127686
7.

Interplay of buried histidine protonation and protein stability in prion misfolding.

Malevanets A, Chong PA, Hansen DF, Rizk P, Sun Y, Lin H, Muhandiram R, Chakrabartty A, Kay LE, Forman-Kay JD, Wodak SJ.

Sci Rep. 2017 Apr 13;7(1):882. doi: 10.1038/s41598-017-00954-7.

8.

Modeling protein assemblies: Critical Assessment of Predicted Interactions (CAPRI) 15 years hence.: 6TH CAPRI evaluation meeting April 17-19 Tel-Aviv, Israel.

Wodak SJ, Janin J.

Proteins. 2017 Mar;85(3):357-358. doi: 10.1002/prot.25233. No abstract available.

PMID:
28019680
9.

Computational proteome-wide screening predicts neurotoxic drug-protein interactome for the investigational analgesic BIA 10-2474.

Molinski SV, Shahani VM, MacKinnon SS, Morayniss LD, Laforet M, Woollard G, Kurji N, Sanchez CG, Wodak SJ, Windemuth A.

Biochem Biophys Res Commun. 2017 Jan 29;483(1):502-508. doi: 10.1016/j.bbrc.2016.12.115. Epub 2016 Dec 20.

PMID:
28007597
10.

Editorial overview: Multi-protein assemblies in signaling.

Shukla AK, Wodak SJ.

Curr Opin Struct Biol. 2016 Dec;41:v-vii. doi: 10.1016/j.sbi.2016.11.010. Epub 2016 Nov 23. No abstract available.

PMID:
27889113
11.

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition.

Lensink MF, Velankar S, Wodak SJ.

Proteins. 2017 Mar;85(3):359-377. doi: 10.1002/prot.25215. Epub 2016 Dec 2.

PMID:
27865038
12.

Computational approaches to investigating allostery.

Schueler-Furman O, Wodak SJ.

Curr Opin Struct Biol. 2016 Dec;41:159-171. doi: 10.1016/j.sbi.2016.06.017. Epub 2016 Sep 6. Review.

PMID:
27607077
13.

A benchmark testing ground for integrating homology modeling and protein docking.

Bohnuud T, Luo L, Wodak SJ, Bonvin AM, Weng Z, Vajda S, Schueler-Furman O, Kozakov D.

Proteins. 2017 Jan;85(1):10-16. doi: 10.1002/prot.25063. Epub 2016 Nov 13.

14.

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.

Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ.

Proteins. 2016 Sep;84 Suppl 1:323-48. doi: 10.1002/prot.25007. Epub 2016 Jun 1.

15.

The Landscape of Intertwined Associations in Homooligomeric Proteins.

Wodak SJ, Malevanets A, MacKinnon SS.

Biophys J. 2015 Sep 15;109(6):1087-100. doi: 10.1016/j.bpj.2015.08.010. Epub 2015 Sep 1. Review.

16.

Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.

Marcon E, Jain H, Bhattacharya A, Guo H, Phanse S, Pu S, Byram G, Collins BC, Dowdell E, Fenner M, Guo X, Hutchinson A, Kennedy JJ, Krastins B, Larsen B, Lin ZY, Lopez MF, Loppnau P, Miersch S, Nguyen T, Olsen JB, Paduch M, Ravichandran M, Seitova A, Vadali G, Vogelsang MS, Whiteaker JR, Zhong G, Zhong N, Zhao L, Aebersold R, Arrowsmith CH, Emili A, Frappier L, Gingras AC, Gstaiger M, Paulovich AG, Koide S, Kossiakoff AA, Sidhu SS, Wodak SJ, Gräslund S, Greenblatt JF, Edwards AM.

Nat Methods. 2015 Aug;12(8):725-31. doi: 10.1038/nmeth.3472. Epub 2015 Jun 29.

PMID:
26121405
17.

Extracting high confidence protein interactions from affinity purification data: at the crossroads.

Pu S, Vlasblom J, Turinsky A, Marcon E, Phanse S, Trimble SS, Olsen J, Greenblatt J, Emili A, Wodak SJ.

J Proteomics. 2015 Apr 6;118:63-80. doi: 10.1016/j.jprot.2015.03.009. Epub 2015 Mar 14.

PMID:
25782749
18.

Landscape of intertwined associations in multi-domain homo-oligomeric proteins.

MacKinnon SS, Wodak SJ.

J Mol Biol. 2015 Jan 30;427(2):350-70. doi: 10.1016/j.jmb.2014.11.003. Epub 2014 Nov 11.

PMID:
25451036
19.

Score_set: a CAPRI benchmark for scoring protein complexes.

Lensink MF, Wodak SJ.

Proteins. 2014 Nov;82(11):3163-9. doi: 10.1002/prot.24678. Epub 2014 Sep 11.

PMID:
25179222
20.

Intercellular network structure and regulatory motifs in the human hematopoietic system.

Qiao W, Wang W, Laurenti E, Turinsky AL, Wodak SJ, Bader GD, Dick JE, Zandstra PW.

Mol Syst Biol. 2014 Jul 15;10:741. doi: 10.15252/msb.20145141.

21.

Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation.

Marcon E, Ni Z, Pu S, Turinsky AL, Trimble SS, Olsen JB, Silverman-Gavrila R, Silverman-Gavrila L, Phanse S, Guo H, Zhong G, Guo X, Young P, Bailey S, Roudeva D, Zhao D, Hewel J, Li J, Gräslund S, Paduch M, Kossiakoff AA, Lupien M, Emili A, Wodak SJ, Greenblatt J.

Cell Rep. 2014 Jul 10;8(1):297-310. doi: 10.1016/j.celrep.2014.05.050. Epub 2014 Jun 26.

22.

Navigating the global protein-protein interaction landscape using iRefWeb.

Turinsky AL, Razick S, Turner B, Donaldson IM, Wodak SJ.

Methods Mol Biol. 2014;1091:315-31. doi: 10.1007/978-1-62703-691-7_22.

PMID:
24203342
23.

Blind prediction of interfacial water positions in CAPRI.

Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Praneeth Kilambi K, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C, Wodak SJ.

Proteins. 2014 Apr;82(4):620-32. doi: 10.1002/prot.24439. Epub 2013 Nov 23.

24.

Docking, scoring, and affinity prediction in CAPRI.

Lensink MF, Wodak SJ.

Proteins. 2013 Dec;81(12):2082-95. doi: 10.1002/prot.24428. Epub 2013 Oct 17.

PMID:
24115211
25.

Protein-protein interaction networks: the puzzling riches.

Wodak SJ, Vlasblom J, Turinsky AL, Pu S.

Curr Opin Struct Biol. 2013 Dec;23(6):941-53. doi: 10.1016/j.sbi.2013.08.002. Epub 2013 Sep 2. Review.

PMID:
24007795
26.

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.

Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, Perez-Cano L, Pallara C, Jimenez B, Fernandez-Recio J, Flores S, Pacella M, Praneeth Kilambi K, Gray JJ, Popov P, Grudinin S, Esquivel-Rodríguez J, Kihara D, Zhao N, Korkin D, Zhu X, Demerdash ON, Mitchell JC, Kanamori E, Tsuchiya Y, Nakamura H, Lee H, Park H, Seok C, Sarmiento J, Liang S, Teraguchi S, Standley DM, Shimoyama H, Terashi G, Takeda-Shitaka M, Iwadate M, Umeyama H, Beglov D, Hall DR, Kozakov D, Vajda S, Pierce BG, Hwang H, Vreven T, Weng Z, Huang Y, Li H, Yang X, Ji X, Liu S, Xiao Y, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Velankar S, Janin J, Wodak SJ, Baker D.

Proteins. 2013 Nov;81(11):1980-7. doi: 10.1002/prot.24356. Epub 2013 Aug 23.

27.

Intertwined associations in structures of homooligomeric proteins.

Mackinnon SS, Malevanets A, Wodak SJ.

Structure. 2013 Apr 2;21(4):638-49. doi: 10.1016/j.str.2013.01.019. Epub 2013 Mar 21.

28.

Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.

Babu M, Vlasblom J, Pu S, Guo X, Graham C, Bean BD, Burston HE, Vizeacoumar FJ, Snider J, Phanse S, Fong V, Tam YY, Davey M, Hnatshak O, Bajaj N, Chandran S, Punna T, Christopolous C, Wong V, Yu A, Zhong G, Li J, Stagljar I, Conibear E, Wodak SJ, Emili A, Greenblatt JF.

Nature. 2012 Sep 27;489(7417):585-9. doi: 10.1038/nature11354. Epub 2012 Sep 2.

PMID:
22940862
29.

A census of human soluble protein complexes.

Havugimana PC, Hart GT, Nepusz T, Yang H, Turinsky AL, Li Z, Wang PI, Boutz DR, Fong V, Phanse S, Babu M, Craig SA, Hu P, Wan C, Vlasblom J, Dar VU, Bezginov A, Clark GW, Wu GC, Wodak SJ, Tillier ER, Paccanaro A, Marcotte EM, Emili A.

Cell. 2012 Aug 31;150(5):1068-81. doi: 10.1016/j.cell.2012.08.011.

30.

Next-generation protein engineering targets influenza.

Wodak SJ.

Nat Biotechnol. 2012 Jun 7;30(6):502-4. doi: 10.1038/nbt.2268. No abstract available.

PMID:
22678386
31.

Savant Genome Browser 2: visualization and analysis for population-scale genomics.

Fiume M, Smith EJ, Brook A, Strbenac D, Turner B, Mezlini AM, Robinson MD, Wodak SJ, Brudno M.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W615-21. doi: 10.1093/nar/gks427. Epub 2012 May 25.

32.

Topic pages: PLoS Computational Biology meets Wikipedia.

Wodak SJ, Mietchen D, Collings AM, Russell RB, Bourne PE.

PLoS Comput Biol. 2012;8(3):e1002446. doi: 10.1371/journal.pcbi.1002446. Epub 2012 Mar 29. No abstract available.

33.

Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.

Babu M, Díaz-Mejía JJ, Vlasblom J, Gagarinova A, Phanse S, Graham C, Yousif F, Ding H, Xiong X, Nazarians-Armavil A, Alamgir M, Ali M, Pogoutse O, Pe'er A, Arnold R, Michaut M, Parkinson J, Golshani A, Whitfield C, Wodak SJ, Moreno-Hagelsieb G, Greenblatt JF, Emili A.

PLoS Genet. 2011 Nov;7(11):e1002377. doi: 10.1371/journal.pgen.1002377. Epub 2011 Nov 17.

34.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, Ko JS, Lee H, Seok C, Bourquard T, Bernauer J, Poupon A, Azé J, Soner S, Ovali SK, Ozbek P, Tal NB, Haliloglu T, Hwang H, Vreven T, Pierce BG, Weng Z, Pérez-Cano L, Pons C, Fernández-Recio J, Jiang F, Yang F, Gong X, Cao L, Xu X, Liu B, Wang P, Li C, Wang C, Robert CH, Guharoy M, Liu S, Huang Y, Li L, Guo D, Chen Y, Xiao Y, London N, Itzhaki Z, Schueler-Furman O, Inbar Y, Potapov V, Cohen M, Schreiber G, Tsuchiya Y, Kanamori E, Standley DM, Nakamura H, Kinoshita K, Driggers CM, Hall RG, Morgan JL, Hsu VL, Zhan J, Yang Y, Zhou Y, Kastritis PL, Bonvin AM, Zhang W, Camacho CJ, Kilambi KP, Sircar A, Gray JJ, Ohue M, Uchikoga N, Matsuzaki Y, Ishida T, Akiyama Y, Khashan R, Bush S, Fouches D, Tropsha A, Esquivel-Rodríguez J, Kihara D, Stranges PB, Jacak R, Kuhlman B, Huang SY, Zou X, Wodak SJ, Janin J, Baker D.

J Mol Biol. 2011 Nov 25;414(2):289-302. doi: 10.1016/j.jmb.2011.09.031. Epub 2011 Sep 29.

35.

Activators of cylindrical proteases as antimicrobials: identification and development of small molecule activators of ClpP protease.

Leung E, Datti A, Cossette M, Goodreid J, McCaw SE, Mah M, Nakhamchik A, Ogata K, El Bakkouri M, Cheng YQ, Wodak SJ, Eger BT, Pai EF, Liu J, Gray-Owen S, Batey RA, Houry WA.

Chem Biol. 2011 Sep 23;18(9):1167-78. doi: 10.1016/j.chembiol.2011.07.023.

36.

High-throughput analyses and curation of protein interactions in yeast.

Wodak SJ, Vlasblom J, Pu S.

Methods Mol Biol. 2011;759:381-406. doi: 10.1007/978-1-61779-173-4_22.

PMID:
21863499
37.

Multiple replica repulsion technique for efficient conformational sampling of biological systems.

Malevanets A, Wodak SJ.

Biophys J. 2011 Aug 17;101(4):951-60. doi: 10.1016/j.bpj.2011.06.043.

38.

Interaction databases on the same page.

Turinsky AL, Razick S, Turner B, Donaldson IM, Wodak SJ.

Nat Biotechnol. 2011 May;29(5):391-3. doi: 10.1038/nbt.1867. No abstract available.

PMID:
21552234
39.

Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms.

Rajendram R, Ferreira JC, Grafodatskaya D, Choufani S, Chiang T, Pu S, Butcher DT, Wodak SJ, Weksberg R.

Epigenetics. 2011 Apr;6(4):410-5. Epub 2011 Apr 1.

PMID:
21343703
40.

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.

Hao Y, Merkoulovitch A, Vlasblom J, Pu S, Turinsky AL, Roudeva D, Turner B, Greenblatt J, Wodak SJ.

Bioinformatics. 2011 Mar 15;27(6):883-4. doi: 10.1093/bioinformatics/btr035. Epub 2011 Jan 20.

41.

Literature curation of protein interactions: measuring agreement across major public databases.

Turinsky AL, Razick S, Turner B, Donaldson IM, Wodak SJ.

Database (Oxford). 2010 Dec 22;2010:baq026. doi: 10.1093/database/baq026. Print 2010.

42.

Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.

Pu S, Turinsky AL, Vlasblom J, On T, Xiong X, Emili A, Zhang Z, Greenblatt J, Parkinson J, Wodak SJ.

PLoS One. 2010 Nov 29;5(11):e14122. doi: 10.1371/journal.pone.0014122.

43.

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.

Turner B, Razick S, Turinsky AL, Vlasblom J, Crowdy EK, Cho E, Morrison K, Donaldson IM, Wodak SJ.

Database (Oxford). 2010 Oct 12;2010:baq023. doi: 10.1093/database/baq023.

44.

DAnCER: disease-annotated chromatin epigenetics resource.

Turinsky AL, Turner B, Borja RC, Gleeson JA, Heath M, Pu S, Switzer T, Dong D, Gong Y, On T, Xiong X, Emili A, Greenblatt J, Parkinson J, Zhang Z, Wodak SJ.

Nucleic Acids Res. 2011 Jan;39(Database issue):D889-94. doi: 10.1093/nar/gkq857. Epub 2010 Sep 28.

45.

Blind predictions of protein interfaces by docking calculations in CAPRI.

Lensink MF, Wodak SJ.

Proteins. 2010 Nov 15;78(15):3085-95. doi: 10.1002/prot.22850.

PMID:
20839234
46.

Docking and scoring protein interactions: CAPRI 2009.

Lensink MF, Wodak SJ.

Proteins. 2010 Nov 15;78(15):3073-84. doi: 10.1002/prot.22818.

PMID:
20806235
47.

Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.

Santos MA, Turinsky AL, Ong S, Tsai J, Berger MF, Badis G, Talukder S, Gehrke AR, Bulyk ML, Hughes TR, Wodak SJ.

Nucleic Acids Res. 2010 Dec;38(22):7927-42. doi: 10.1093/nar/gkq714. Epub 2010 Aug 12.

48.

Lead generation and optimization based on protein-ligand complementarity.

Ogata K, Isomura T, Kawata S, Yamashita H, Kubodera H, Wodak SJ.

Molecules. 2010 Jun 17;15(6):4382-400. doi: 10.3390/molecules15064382.

49.

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.

On T, Xiong X, Pu S, Turinsky A, Gong Y, Emili A, Zhang Z, Greenblatt J, Wodak SJ, Parkinson J.

Proteins. 2010 Jul;78(9):2075-89. doi: 10.1002/prot.22723.

PMID:
20455264
50.

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.

Vlasblom J, Wodak SJ.

BMC Bioinformatics. 2009 Mar 30;10:99. doi: 10.1186/1471-2105-10-99.

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