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Items: 1 to 50 of 171

1.

Lineage tracing of col10a1 cells identifies distinct progenitor populations for osteoblasts and joint cells in the regenerating fin of medaka (Oryzias latipes).

Dasyani M, Tan WH, Sundaram S, Imangali N, Centanin L, Wittbrodt J, Winkler C.

Dev Biol. 2019 Nov 1;455(1):85-99. doi: 10.1016/j.ydbio.2019.07.012. Epub 2019 Jul 17.

PMID:
31325454
2.

yap1b, a divergent Yap/Taz family member, cooperates with yap1 in survival and morphogenesis via common transcriptional targets.

Vázquez-Marín J, Gutiérrez-Triana JA, Almuedo-Castillo M, Buono L, Gómez-Skarmeta JL, Mateo JL, Wittbrodt J, Martínez-Morales JR.

Development. 2019 Jun 21;146(13). pii: dev173286. doi: 10.1242/dev.173286.

PMID:
31142542
3.

Instantaneous isotropic volumetric imaging of fast biological processes.

Wagner N, Norlin N, Gierten J, de Medeiros G, Balázs B, Wittbrodt J, Hufnagel L, Prevedel R.

Nat Methods. 2019 Jun;16(6):497-500. doi: 10.1038/s41592-019-0393-z. Epub 2019 Apr 29.

PMID:
31036959
4.

Morphogenesis and axis specification occur in parallel during optic cup and optic fissure formation, differentially modulated by BMP and Wnt.

Eckert P, Knickmeyer MD, Schütz L, Wittbrodt J, Heermann S.

Open Biol. 2019 Feb 28;9(2):180179. doi: 10.1098/rsob.180179.

5.

Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish.

Tsingos E, Höckendorf B, Sütterlin T, Kirchmaier S, Grabe N, Centanin L, Wittbrodt J.

Elife. 2019 Mar 26;8. pii: e42646. doi: 10.7554/eLife.42646.

6.

Enhanced in vivo-imaging in medaka by optimized anaesthesia, fluorescent protein selection and removal of pigmentation.

Lischik CQ, Adelmann L, Wittbrodt J.

PLoS One. 2019 Mar 7;14(3):e0212956. doi: 10.1371/journal.pone.0212956. eCollection 2019.

7.

Swift Large-scale Examination of Directed Genome Editing.

Hammouda OT, Böttger F, Wittbrodt J, Thumberger T.

PLoS One. 2019 Mar 5;14(3):e0213317. doi: 10.1371/journal.pone.0213317. eCollection 2019.

8.

Quantitative morphometric analysis of adult teleost fish by X-ray computed tomography.

Weinhardt V, Shkarin R, Wernet T, Wittbrodt J, Baumbach T, Loosli F.

Sci Rep. 2018 Nov 8;8(1):16531. doi: 10.1038/s41598-018-34848-z.

9.

Novel components of germline sex determination acting downstream of foxl3 in medaka.

Kikuchi M, Nishimura T, Saito D, Shigenobu S, Takada R, Gutierrez-Triana JA, Cerdán JLM, Takada S, Wittbrodt J, Suyama M, Tanaka M.

Dev Biol. 2019 Jan 1;445(1):80-89. doi: 10.1016/j.ydbio.2018.10.019. Epub 2018 Oct 27.

PMID:
30392839
10.

Notch signalling patterns retinal composition by regulating atoh7 during post-embryonic growth.

Pérez Saturnino A, Lust K, Wittbrodt J.

Development. 2018 Nov 9;145(21). pii: dev169698. doi: 10.1242/dev.169698.

11.

Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells.

Roussigné M, Wei L, Tsingos E, Kuchling F, Alkobtawi M, Tsalavouta M, Wittbrodt J, Carl M, Blader P, Wilson SW.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):E9812-E9821. doi: 10.1073/pnas.1812016115. Epub 2018 Oct 3.

12.

Efficient single-copy HDR by 5' modified long dsDNA donors.

Gutierrez-Triana JA, Tavhelidse T, Thumberger T, Thomas I, Wittbrodt B, Kellner T, Anlas K, Tsingos E, Wittbrodt J.

Elife. 2018 Aug 29;7. pii: e39468. doi: 10.7554/eLife.39468.

13.

TGFβ-facilitated optic fissure fusion and the role of bone morphogenetic protein antagonism.

Knickmeyer MD, Mateo JL, Eckert P, Roussa E, Rahhal B, Zuniga A, Krieglstein K, Wittbrodt J, Heermann S.

Open Biol. 2018 Mar;8(3). pii: 170134. doi: 10.1098/rsob.170134.

14.
15.

Activating the regenerative potential of Müller glia cells in a regeneration-deficient retina.

Lust K, Wittbrodt J.

Elife. 2018 Jan 29;7. pii: e32319. doi: 10.7554/eLife.32319.

16.

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.

Mateo JL, van den Berg DLC, Haeussler M, Drechsel D, Gaber ZB, Castro DS, Robson P, Lu QR, Crawford GE, Flicek P, Ettwiller L, Wittbrodt J, Guillemot F, Martynoga B.

Genome Res. 2017 Dec;27(12):2129. doi: 10.1101/gr.231845.117. No abstract available.

17.

Correction: Dynamics of in vivo ASC speck formation.

Kuri P, Schieber NL, Thumberger T, Wittbrodt J, Schwab Y, Leptin M.

J Cell Biol. 2017 Oct 2;216(10):3423-3424. doi: 10.1083/JCB.20170310308302017c. Epub 2017 Sep 13. No abstract available.

18.

Dynamics of in vivo ASC speck formation.

Kuri P, Schieber NL, Thumberger T, Wittbrodt J, Schwab Y, Leptin M.

J Cell Biol. 2017 Sep 4;216(9):2891-2909. doi: 10.1083/jcb.201703103. Epub 2017 Jul 12. Erratum in: J Cell Biol. 2017 Sep 13;:.

19.

Correction: CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Stemmer M, Thumberger T, Del Sol Keyer M, Wittbrodt J, Mateo JL.

PLoS One. 2017 Apr 20;12(4):e0176619. doi: 10.1371/journal.pone.0176619. eCollection 2017.

20.

Gastrulation in an annual killifish: Molecular and cellular events during germ layer formation in Austrolebias.

Pereiro L, Loosli F, Fernández J, Härtel S, Wittbrodt J, Concha ML.

Dev Dyn. 2017 Nov;246(11):812-826. doi: 10.1002/dvdy.24496. Epub 2017 Mar 24.

21.

Bifacial stem cell niches in fish and plants.

Shi D, Tavhelidse T, Thumberger T, Wittbrodt J, Greb T.

Curr Opin Genet Dev. 2017 Aug;45:28-33. doi: 10.1016/j.gde.2017.02.002. Epub 2017 Feb 24. Review.

PMID:
28242480
22.

Expression of the novel maternal centrosome assembly factor Wdr8 is required for vertebrate embryonic mitoses.

Inoue D, Stemmer M, Thumberger T, Ruppert T, Bärenz F, Wittbrodt J, Gruss OJ.

Nat Commun. 2017 Jan 18;8:14090. doi: 10.1038/ncomms14090.

23.

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.

Mateo JL, van den Berg DL, Haeussler M, Drechsel D, Gaber ZB, Castro DS, Robson P, Lu QR, Crawford GE, Flicek P, Ettwiller L, Wittbrodt J, Guillemot F, Martynoga B.

Genome Res. 2016 Nov;26(11):1626. No abstract available.

24.

iDamIDseq and iDEAR: an improved method and computational pipeline to profile chromatin-binding proteins.

Gutierrez-Triana JA, Mateo JL, Ibberson D, Ryu S, Wittbrodt J.

Development. 2016 Nov 15;143(22):4272-4278. Epub 2016 Oct 5.

25.

Analysis of cellular behavior and cytoskeletal dynamics reveal a constriction mechanism driving optic cup morphogenesis.

Nicolás-Pérez M, Kuchling F, Letelier J, Polvillo R, Wittbrodt J, Martínez-Morales JR.

Elife. 2016 Oct 31;5. pii: e15797. doi: 10.7554/eLife.15797.

26.

Generation of DNA Constructs Using the Golden GATEway Cloning Method.

Kirchmaier S, Lust K, Wittbrodt J.

Methods Mol Biol. 2017;1472:157-68. doi: 10.1007/978-1-4939-6343-0_12.

PMID:
27671939
27.

Identification, visualization and clonal analysis of intestinal stem cells in fish.

Aghaallaei N, Gruhl F, Schaefer CQ, Wernet T, Weinhardt V, Centanin L, Loosli F, Baumbach T, Wittbrodt J.

Development. 2016 Oct 1;143(19):3470-3480. Epub 2016 Aug 30.

28.

An eye on light-sheet microscopy.

Kromm D, Thumberger T, Wittbrodt J.

Methods Cell Biol. 2016;133:105-23. doi: 10.1016/bs.mcb.2016.01.001. Epub 2016 Feb 27.

PMID:
27263410
29.

De novo neurogenesis by targeted expression of atoh7 to Müller glia cells.

Lust K, Sinn R, Pérez Saturnino A, Centanin L, Wittbrodt J.

Development. 2016 Jun 1;143(11):1874-83. doi: 10.1242/dev.135905. Epub 2016 Apr 11.

30.

Hox Function Is Required for the Development and Maintenance of the Drosophila Feeding Motor Unit.

Friedrich J, Sorge S, Bujupi F, Eichenlaub MP, Schulz NG, Wittbrodt J, Lohmann I.

Cell Rep. 2016 Feb 2;14(4):850-860. doi: 10.1016/j.celrep.2015.12.077. Epub 2016 Jan 14.

31.

Hold your breath!

Lust K, Wittbrodt J.

Elife. 2015 Dec 16;4:e12523. doi: 10.7554/eLife.12523. No abstract available.

32.

Correction: Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle.

Dolle D, Mateo JL, Eichenlaub MP, Sinn R, Reinhardt R, Höckendorf B, Inoue D, Centanin L, Ettwiller L, Wittbrodt J.

PLoS One. 2015 Nov 23;10(11):e0143989. doi: 10.1371/journal.pone.0143989. eCollection 2015.

33.

Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle.

Dolle D, Mateo JL, Eichenlaub MP, Sinn R, Reinhardt R, Höckendorf B, Inoue D, Centanin L, Ettwiller L, Wittbrodt J.

PLoS One. 2015 Oct 27;10(10):e0141487. doi: 10.1371/journal.pone.0141487. eCollection 2015. Erratum in: PLoS One. 2015;10(11):e0143989.

34.

MEPD: medaka expression pattern database, genes and more.

Alonso-Barba JI, Rahman RU, Wittbrodt J, Mateo JL.

Nucleic Acids Res. 2016 Jan 4;44(D1):D819-21. doi: 10.1093/nar/gkv1029. Epub 2015 Oct 7.

35.

Expression screening using a Medaka cDNA library identifies evolutionarily conserved regulators of the p53/Mdm2 pathway.

Zhang P, Kratz AS, Salama M, Elabd S, Heinrich T, Wittbrodt J, Blattner C, Davidson G.

BMC Biotechnol. 2015 Oct 8;15:92. doi: 10.1186/s12896-015-0208-y.

36.

A trans-Regulatory Code for the Forebrain Expression of Six3.2 in the Medaka Fish.

Beccari L, Marco-Ferreres R, Tabanera N, Manfredi A, Souren M, Wittbrodt B, Conte I, Wittbrodt J, Bovolenta P.

J Biol Chem. 2015 Nov 6;290(45):26927-42. doi: 10.1074/jbc.M115.681254. Epub 2015 Sep 16.

37.

Noninvasive In Toto Imaging of the Thymus Reveals Heterogeneous Migratory Behavior of Developing T Cells.

Bajoghli B, Kuri P, Inoue D, Aghaallaei N, Hanelt M, Thumberger T, Rauzi M, Wittbrodt J, Leptin M.

J Immunol. 2015 Sep 1;195(5):2177-86. doi: 10.4049/jimmunol.1500361. Epub 2015 Jul 17.

38.

Deletion of a kinesin I motor unmasks a mechanism of homeostatic branching control by neurotrophin-3.

Auer TO, Xiao T, Bercier V, Gebhardt C, Duroure K, Concordet JP, Wyart C, Suster M, Kawakami K, Wittbrodt J, Baier H, Del Bene F.

Elife. 2015 Jun 15;4. doi: 10.7554/eLife.05061.

39.

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Stemmer M, Thumberger T, Del Sol Keyer M, Wittbrodt J, Mateo JL.

PLoS One. 2015 Apr 24;10(4):e0124633. doi: 10.1371/journal.pone.0124633. eCollection 2015. Erratum in: PLoS One. 2017 Apr 20;12 (4):e0176619.

40.

Sox2, Tlx, Gli3, and Her9 converge on Rx2 to define retinal stem cells in vivo.

Reinhardt R, Centanin L, Tavhelidse T, Inoue D, Wittbrodt B, Concordet JP, Martinez-Morales JR, Wittbrodt J.

EMBO J. 2015 Jun 3;34(11):1572-88. doi: 10.15252/embj.201490706. Epub 2015 Apr 23.

41.

The genomic and genetic toolbox of the teleost medaka (Oryzias latipes).

Kirchmaier S, Naruse K, Wittbrodt J, Loosli F.

Genetics. 2015 Apr;199(4):905-18. doi: 10.1534/genetics.114.173849. Review.

42.

TRIM25 has a dual function in the p53/Mdm2 circuit.

Zhang P, Elabd S, Hammer S, Solozobova V, Yan H, Bartel F, Inoue S, Henrich T, Wittbrodt J, Loosli F, Davidson G, Blattner C.

Oncogene. 2015 Nov 12;34(46):5729-38. doi: 10.1038/onc.2015.21. Epub 2015 Mar 2.

PMID:
25728675
43.

Eye morphogenesis driven by epithelial flow into the optic cup facilitated by modulation of bone morphogenetic protein.

Heermann S, Schütz L, Lemke S, Krieglstein K, Wittbrodt J.

Elife. 2015 Feb 24;4. doi: 10.7554/eLife.05216.

44.

Cavefish eye loss in response to an early block in retinal differentiation progression.

Stemmer M, Schuhmacher LN, Foulkes NS, Bertolucci C, Wittbrodt J.

Development. 2015 Feb 15;142(4):743-752. doi: 10.1242/dev.114629. Epub 2015 Jan 23.

45.

Tyrosine phosphorylation of LRP6 by Src and Fer inhibits Wnt/β-catenin signalling.

Chen Q, Su Y, Wesslowski J, Hagemann AI, Ramialison M, Wittbrodt J, Scholpp S, Davidson G.

EMBO Rep. 2014 Dec;15(12):1254-67. doi: 10.15252/embr.201439644. Epub 2014 Nov 12.

46.

Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.

Mateo JL, van den Berg DL, Haeussler M, Drechsel D, Gaber ZB, Castro DS, Robson P, Lu QR, Crawford GE, Flicek P, Ettwiller L, Wittbrodt J, Guillemot F, Martynoga B.

Genome Res. 2015 Jan;25(1):41-56. doi: 10.1101/gr.173435.114. Epub 2014 Oct 7. Erratum in: Genome Res. 2016 Nov;26(11):1626. Genome Res. 2017 Dec;27(12 ):2129.

47.

The PAR complex controls the spatiotemporal dynamics of F-actin and the MTOC in directionally migrating leukocytes.

Crespo CL, Vernieri C, Keller PJ, Garrè M, Bender JR, Wittbrodt J, Pardi R.

J Cell Sci. 2014 Oct 15;127(Pt 20):4381-95. doi: 10.1242/jcs.146217. Epub 2014 Sep 1.

48.

Differential responsiveness of distinct retinal domains to Atoh7.

Sinn R, Peravali R, Heermann S, Wittbrodt J.

Mech Dev. 2014 Aug;133:218-29. doi: 10.1016/j.mod.2014.08.002. Epub 2014 Aug 21.

49.

Exclusive multipotency and preferential asymmetric divisions in post-embryonic neural stem cells of the fish retina.

Centanin L, Ander JJ, Hoeckendorf B, Lust K, Kellner T, Kraemer I, Urbany C, Hasel E, Harris WA, Simons BD, Wittbrodt J.

Development. 2014 Sep;141(18):3472-82. doi: 10.1242/dev.109892. Epub 2014 Aug 19.

50.

Distinct roles for BAI1 and TIM-4 in the engulfment of dying neurons by microglia.

Mazaheri F, Breus O, Durdu S, Haas P, Wittbrodt J, Gilmour D, Peri F.

Nat Commun. 2014 Jun 5;5:4046. doi: 10.1038/ncomms5046.

PMID:
24898390

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