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Items: 37

1.

De novo construction of polyploid linkage maps using discrete graphical models.

Behrouzi P, Wit EC.

Bioinformatics. 2018 Sep 4. doi: 10.1093/bioinformatics/bty777. [Epub ahead of print]

PMID:
30184062
2.

Estimating Causal Effects from Nonparanormal Observational Data.

Mahdi Mahmoudi S, Wit EC.

Int J Biostat. 2018 Sep 1. pii: /j/ijb.ahead-of-print/ijb-2018-0030/ijb-2018-0030.xml. doi: 10.1515/ijb-2018-0030. [Epub ahead of print] No abstract available.

PMID:
30173203
3.

Stability estimation of autoregulated genes under Michaelis-Menten-type kinetics.

Arani BMS, Mahmoudi M, Lahti L, González J, Wit EC.

Phys Rev E. 2018 Jun;97(6-1):062407. doi: 10.1103/PhysRevE.97.062407.

PMID:
30011543
4.

Metabolic-flux dependent regulation of microbial physiology.

Litsios A, Ortega ÁD, Wit EC, Heinemann M.

Curr Opin Microbiol. 2018 Apr;42:71-78. doi: 10.1016/j.mib.2017.10.029. Epub 2017 Nov 15. Review.

5.

Mixture model with multiple allocations for clustering spatially correlated observations in the analysis of ChIP-Seq data.

Ranciati S, Viroli C, Wit EC.

Biom J. 2017 Nov;59(6):1301-1316. doi: 10.1002/bimj.201600131. Epub 2017 Jun 30.

PMID:
28664629
6.

An investigation of emotion dynamics in major depressive disorder patients and healthy persons using sparse longitudinal networks.

de Vos S, Wardenaar KJ, Bos EH, Wit EC, Bouwmans MEJ, de Jonge P.

PLoS One. 2017 Jun 1;12(6):e0178586. doi: 10.1371/journal.pone.0178586. eCollection 2017.

7.

Autonomous Metabolic Oscillations Robustly Gate the Early and Late Cell Cycle.

Papagiannakis A, Niebel B, Wit EC, Heinemann M.

Mol Cell. 2017 Jan 19;65(2):285-295. doi: 10.1016/j.molcel.2016.11.018. Epub 2016 Dec 15.

8.

NEAT: an efficient network enrichment analysis test.

Signorelli M, Vinciotti V, Wit EC.

BMC Bioinformatics. 2016 Sep 5;17(1):352. doi: 10.1186/s12859-016-1203-6.

9.

Consistency of biological networks inferred from microarray and sequencing data.

Vinciotti V, Wit EC, Jansen R, de Geus EJ, Penninx BW, Boomsma DI, 't Hoen PA.

BMC Bioinformatics. 2016 Jun 24;17:254. doi: 10.1186/s12859-016-1136-0.

10.

Model selection for factorial Gaussian graphical models with an application to dynamic regulatory networks.

Vinciotti V, Augugliaro L, Abbruzzo A, Wit EC.

Stat Appl Genet Mol Biol. 2016 Jun 1;15(3):193-212. doi: 10.1515/sagmb-2014-0075.

PMID:
27023322
11.

Decomposing the heterogeneity of depression at the person-, symptom-, and time-level: latent variable models versus multimode principal component analysis.

de Vos S, Wardenaar KJ, Bos EH, Wit EC, de Jonge P.

BMC Med Res Methodol. 2015 Oct 15;15:88. doi: 10.1186/s12874-015-0080-4.

12.

Protein biogenesis machinery is a driver of replicative aging in yeast.

Janssens GE, Meinema AC, González J, Wolters JC, Schmidt A, Guryev V, Bischoff R, Wit EC, Veenhoff LM, Heinemann M.

Elife. 2015 Dec 1;4:e08527. doi: 10.7554/eLife.08527.

13.

Inferring slowly-changing dynamic gene-regulatory networks.

Wit EC, Abbruzzo A.

BMC Bioinformatics. 2015;16 Suppl 6:S5. doi: 10.1186/1471-2105-16-S6-S5. Epub 2015 Apr 17.

14.

Calorie restriction does not elicit a robust extension of replicative lifespan in Saccharomyces cerevisiae.

Huberts DH, González J, Lee SS, Litsios A, Hubmann G, Wit EC, Heinemann M.

Proc Natl Acad Sci U S A. 2014 Aug 12;111(32):11727-31. doi: 10.1073/pnas.1410024111. Epub 2014 Jul 28.

15.

Confidence intervals for intraclass correlation coefficients in variance components models.

Demetrashvili N, Wit EC, van den Heuvel ER.

Stat Methods Med Res. 2016 Oct;25(5):2359-2376. Epub 2014 Feb 17.

PMID:
24535554
16.

Probability genotype imputation method and integrated weighted lasso for QTL identification.

Demetrashvili N, Van den Heuvel ER, Wit EC.

BMC Genet. 2013 Dec 30;14:125. doi: 10.1186/1471-2156-14-125.

17.

Borrowing strength: a likelihood ratio test for related sparse signals.

Wit EC, Bakewell DJ.

Bioinformatics. 2012 Aug 1;28(15):1980-9. doi: 10.1093/bioinformatics/bts316. Epub 2012 Jun 4.

18.

Novel non-systemic inhibitor of ileal apical Na+-dependent bile acid transporter reduces serum cholesterol levels in hamsters and monkeys.

Kitayama K, Nakai D, Kono K, van der Hoop AG, Kurata H, de Wit EC, Cohen LH, Inaba T, Kohama T.

Eur J Pharmacol. 2006 Jun 6;539(1-2):89-98. Epub 2006 Apr 7.

PMID:
16687134
19.

Elevated formation of pyridinoline cross-links by profibrotic cytokines is associated with enhanced lysyl hydroxylase 2b levels.

van der Slot AJ, van Dura EA, de Wit EC, De Groot J, Huizinga TW, Bank RA, Zuurmond AM.

Biochim Biophys Acta. 2005 Jun 30;1741(1-2):95-102. Epub 2004 Oct 5.

20.

Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm.

Dennis JL, Hvidsten TR, Wit EC, Komorowski J, Bell AK, Downie I, Mooney J, Verbeke C, Bellamy C, Keith WN, Oien KA.

Clin Cancer Res. 2005 May 15;11(10):3766-72.

21.

Rosuvastatin reduces plasma lipids by inhibiting VLDL production and enhancing hepatobiliary lipid excretion in ApoE*3-leiden mice.

Delsing DJ, Post SM, Groenendijk M, Solaas K, van der Boom H, van Duyvenvoorde W, de Wit EC, Bloks VW, Kuipers F, Havekes LM, Princen HM.

J Cardiovasc Pharmacol. 2005 Jan;45(1):53-60.

PMID:
15613980
22.

Identification from public data of molecular markers of adenocarcinoma characteristic of the site of origin.

Dennis JL, Vass JK, Wit EC, Keith WN, Oien KA.

Cancer Res. 2002 Nov 1;62(21):5999-6005.

23.
24.

Dietary plant stanol esters reduce VLDL cholesterol secretion and bile saturation in apolipoprotein E*3-Leiden transgenic mice.

Volger OL, van der Boom H, de Wit EC, van Duyvenvoorde W, Hornstra G, Plat J, Havekes LM, Mensink RP, Princen HM.

Arterioscler Thromb Vasc Biol. 2001 Jun;21(6):1046-52.

PMID:
11397718
25.

Acyl-CoA:cholesterol acyltransferase inhibitor avasimibe reduces atherosclerosis in addition to its cholesterol-lowering effect in ApoE*3-Leiden mice.

Delsing DJ, Offerman EH, van Duyvenvoorde W, van Der Boom H, de Wit EC, Gijbels MJ, van Der Laarse A, Jukema JW, Havekes LM, Princen HM.

Circulation. 2001 Apr 3;103(13):1778-86.

PMID:
11282910
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29.

Insulin suppresses apolipoprotein(a) synthesis by primary cultures of cynomolgus monkey hepatocytes.

Neele DM, de Wit EC, Princen HM.

Diabetologia. 1999 Jan;42(1):41-4.

PMID:
10027576
30.

No effect of fibrates on synthesis of apolipoprotein(a) in primary cultures of cynomolgus monkey and human hepatocytes: apolipoprotein A-I synthesis increased.

Neele DM, Kaptein A, Huisman H, de Wit EC, Princen HM.

Biochem Biophys Res Commun. 1998 Mar 17;244(2):374-8.

PMID:
9514936
32.
33.
34.

Cotranslational inhibition of apoB-100 synthesis by cyclosporin A in the human hepatoma cell line HepG2.

Kaptein A, de Wit EC, Princen HM.

Arterioscler Thromb. 1994 May;14(5):780-9.

PMID:
8172854
35.

Retinoids stimulate ApoA-I synthesis by induction of gene transcription in primary hepatocyte cultures from cynomolgus monkey (Macaca fascicularis)

Kaptein A, de Wit EC, Princen HM.

Arterioscler Thromb. 1993 Oct;13(10):1505-14. Erratum in: Arterioscler Thromb 1994 May;14(5):839.

PMID:
8399088
37.

Stimulation of the LDL receptor activity in the human hepatoma cell line Hep G2 by high-density serum fractions.

Havekes LM, Schouten D, de Wit EC, Cohen LH, Griffioen M, van Hinsbergh VW, Princen HM.

Biochim Biophys Acta. 1986 Feb 12;875(2):236-46.

PMID:
3002482

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