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Items: 1 to 50 of 476

1.

The effectiveness of physiotherapy interventions on pain and quality of life in adults with persistent post-surgical pain compared to usual care: A systematic review.

Robinson A, McIntosh J, Peberdy H, Wishart D, Brown G, Pope H, Kumar S.

PLoS One. 2019 Dec 13;14(12):e0226227. doi: 10.1371/journal.pone.0226227. eCollection 2019.

PMID:
31834898
2.

Assessing the performance of genome-wide association studies for predicting disease risk.

Patron J, Serra-Cayuela A, Han B, Li C, Wishart DS.

PLoS One. 2019 Dec 5;14(12):e0220215. doi: 10.1371/journal.pone.0220215. eCollection 2019.

3.

Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis.

Chong J, Wishart DS, Xia J.

Curr Protoc Bioinformatics. 2019 Dec;68(1):e86. doi: 10.1002/cpbi.86.

PMID:
31756036
4.

Exposome-Explorer 2.0: an update incorporating candidate dietary biomarkers and dietary associations with cancer risk.

Neveu V, Nicolas G, Salek RM, Wishart DS, Scalbert A.

Nucleic Acids Res. 2019 Nov 14. pii: gkz1009. doi: 10.1093/nar/gkz1009. [Epub ahead of print]

PMID:
31724701
5.

Gamma-aminobutyric acid-producing lactobacilli positively affect metabolism and depressive-like behaviour in a mouse model of metabolic syndrome.

Patterson E, Ryan PM, Wiley N, Carafa I, Sherwin E, Moloney G, Franciosi E, Mandal R, Wishart DS, Tuohy K, Ross RP, Cryan JF, Dinan TG, Stanton C.

Sci Rep. 2019 Nov 8;9(1):16323. doi: 10.1038/s41598-019-51781-x.

6.

The role of hydration effects in 5-fluorouridine binding to SOD1: insight from a new 3D-RISM-KH based protocol for including structural water in docking simulations.

Hinge VK, Blinov N, Roy D, Wishart DS, Kovalenko A.

J Comput Aided Mol Des. 2019 Oct;33(10):913-926. doi: 10.1007/s10822-019-00239-3. Epub 2019 Nov 4.

PMID:
31686367
7.

International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis.

Thompson JW, Adams KJ, Adamski J, Asad Y, Borts D, Bowden JA, Byram G, Dang V, Dunn WB, Fernandez F, Fiehn O, Gaul DA, Hühmer AF, Kalli A, Koal T, Koeniger S, Mandal R, Meier F, Naser FJ, O'Neil D, Pal A, Patti GJ, Pham-Tuan H, Prehn C, Raynaud FI, Shen T, Southam AD, St John-Williams L, Sulek K, Vasilopoulou CG, Viant M, Winder CL, Wishart D, Zhang L, Zheng J, Moseley MA.

Anal Chem. 2019 Nov 19;91(22):14407-14416. doi: 10.1021/acs.analchem.9b02908. Epub 2019 Nov 8.

PMID:
31638379
8.

PathBank: a comprehensive pathway database for model organisms.

Wishart DS, Li C, Marcu A, Badran H, Pon A, Budinski Z, Patron J, Lipton D, Cao X, Oler E, Li K, Paccoud M, Hong C, Guo AC, Chan C, Wei W, Ramirez-Gaona M.

Nucleic Acids Res. 2019 Oct 11. pii: gkz861. doi: 10.1093/nar/gkz861. [Epub ahead of print]

PMID:
31602464
9.

Automated Tools for the Analysis of 1D-NMR and 2D-NMR Spectra.

Lipfert M, Rout MK, Berjanskii M, Wishart DS.

Methods Mol Biol. 2019;2037:429-449. doi: 10.1007/978-1-4939-9690-2_24.

PMID:
31463859
10.

Metformin and Dipeptidase Peptidyl-4 Inhibitor Differentially Modulate the Intestinal Microbiota and Plasma Metabolome of Metabolically Dysfunctional Mice.

Ryan PM, Patterson E, Carafa I, Mandal R, Wishart DS, Dinan TG, Cryan JF, Tuohy KM, Stanton C, Ross RP.

Can J Diabetes. 2019 May 27. pii: S1499-2671(19)30002-4. doi: 10.1016/j.jcjd.2019.05.008. [Epub ahead of print]

PMID:
31445961
11.

Metabolomics for Investigating Physiological and Pathophysiological Processes.

Wishart DS.

Physiol Rev. 2019 Oct 1;99(4):1819-1875. doi: 10.1152/physrev.00035.2018. Review.

PMID:
31434538
12.

Preparation and characterization of a highly soluble Aβ1-42 peptide variant.

LeVatte MA, Lipfert M, Ladner-Keay C, Wishart DS.

Protein Expr Purif. 2019 Dec;164:105480. doi: 10.1016/j.pep.2019.105480. Epub 2019 Aug 16.

PMID:
31425755
13.

Perspective: Dietary Biomarkers of Intake and Exposure—Exploration with Omics Approaches

Maruvada P, Lampe JW, Wishart DS, Barupal D, Chester DN, Dodd D, Djoumbou-Feunang Y, Dorrestein PC, Dragsted LO, Draper J, Duffy LC, Dwyer JT, Emenaker NJ, Fiehn O, Gerszten RE, B Hu F, Karp RW, Klurfeld DM, Laughlin MR, Little AR, Lynch CJ, Moore SC, Nicastro HL, O'Brien DM, Ordovás JM, Osganian SK, Playdon M, Prentice R, Raftery D, Reisdorph N, Roche HM, Ross SA, Sang S, Scalbert A, Srinivas PR, Zeisel SH.

Adv Nutr. 2019 Aug 6. pii: nmz075. doi: 10.1093/advances/nmz075. [Epub ahead of print]

PMID:
31386148
14.

NMR metabolomics: A look ahead.

Wishart DS.

J Magn Reson. 2019 Sep;306:155-161. doi: 10.1016/j.jmr.2019.07.013. Epub 2019 Jul 11.

PMID:
31377153
15.

Urinary Organic Acids Increase After Clinical Stabilization of Hospitalized Children With Severe Acute Malnutrition.

Daniel AI, Arvidsson Kvissberg ME, Senga E, Versloot CJ, Harawa PP, Voskuijl W, Wishart D, Mandal R, Bandsma R, Bourdon C.

Food Nutr Bull. 2019 Jul 14:379572119853930. doi: 10.1177/0379572119853930. [Epub ahead of print]

PMID:
31303023
16.

Impaired branched chain amino acid oxidation contributes to cardiac insulin resistance in heart failure.

Uddin GM, Zhang L, Shah S, Fukushima A, Wagg CS, Gopal K, Al Batran R, Pherwani S, Ho KL, Boisvenue J, Karwi QG, Altamimi T, Wishart DS, Dyck JRB, Ussher JR, Oudit GY, Lopaschuk GD.

Cardiovasc Diabetol. 2019 Jul 5;18(1):86. doi: 10.1186/s12933-019-0892-3.

17.

Transformation of polyphenols found in pigmented gluten-free flours during in vitro large intestinal fermentation.

Rocchetti G, Lucini L, Giuberti G, Bhumireddy SR, Mandal R, Trevisan M, Wishart DS.

Food Chem. 2019 Nov 15;298:125068. doi: 10.1016/j.foodchem.2019.125068. Epub 2019 Jun 24.

PMID:
31260977
18.

Metabolomic profiling of the excretory-secretory products of hookworm and whipworm.

Wangchuk P, Kouremenos K, Eichenberger RM, Pearson M, Susianto A, Wishart DS, McConville MJ, Loukas A.

Metabolomics. 2019 Jun 28;15(7):101. doi: 10.1007/s11306-019-1561-y.

PMID:
31254203
19.

NMR Spectroscopy for Metabolomics Research.

Emwas AH, Roy R, McKay RT, Tenori L, Saccenti E, Gowda GAN, Raftery D, Alahmari F, Jaremko L, Jaremko M, Wishart DS.

Metabolites. 2019 Jun 27;9(7). pii: E123. doi: 10.3390/metabo9070123. Review.

20.

A fast, sensitive, single-step colorimetric dipstick assay for quantifying ascorbic acid in urine.

LeVatte MA, Lipfert M, Zheng J, Wishart DS.

Anal Biochem. 2019 Sep 1;580:1-13. doi: 10.1016/j.ab.2019.05.015. Epub 2019 May 31.

PMID:
31153872
21.

Herbs and Spices- Biomarkers of Intake Based on Human Intervention Studies - A Systematic Review.

Vázquez-Fresno R, Rosana ARR, Sajed T, Onookome-Okome T, Wishart NA, Wishart DS.

Genes Nutr. 2019 May 22;14:18. doi: 10.1186/s12263-019-0636-8. eCollection 2019. Review.

22.

Protocols for NMR Analysis in Livestock Metabolomics.

Foroutan A, Goldansaz SA, Lipfert M, Wishart DS.

Methods Mol Biol. 2019;1996:311-324. doi: 10.1007/978-1-4939-9488-5_23.

PMID:
31127564
23.

CFM-ID 3.0: Significantly Improved ESI-MS/MS Prediction and Compound Identification.

Djoumbou-Feunang Y, Pon A, Karu N, Zheng J, Li C, Arndt D, Gautam M, Allen F, Wishart DS.

Metabolites. 2019 Apr 13;9(4). pii: E72. doi: 10.3390/metabo9040072.

24.

Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community.

Pinu FR, Beale DJ, Paten AM, Kouremenos K, Swarup S, Schirra HJ, Wishart D.

Metabolites. 2019 Apr 18;9(4). pii: E76. doi: 10.3390/metabo9040076.

25.

Chemical Composition of Commercial Cow's Milk.

Foroutan A, Guo AC, Vazquez-Fresno R, Lipfert M, Zhang L, Zheng J, Badran H, Budinski Z, Mandal R, Ametaj BN, Wishart DS.

J Agric Food Chem. 2019 May 1;67(17):4897-4914. doi: 10.1021/acs.jafc.9b00204. Epub 2019 Apr 17.

PMID:
30994344
26.

Porous Nanophotonic Optomechanical Beams for Enhanced Mass Adsorption.

Venkatasubramanian A, Sauer VTK, Westwood-Bachman JN, Cui K, Xia M, Wishart DS, Hiebert WK.

ACS Sens. 2019 May 24;4(5):1197-1202. doi: 10.1021/acssensors.8b01366. Epub 2019 Apr 23.

PMID:
30942578
27.

Editorial: metabolomic biomarkers for colorectal adenocarcinoma and in the differentiation between irritable bowel syndrome and ulcerative colitis in clinical remission - confounded by the gut microbiome? Authors' reply.

Keshteli AH, Madsen KL, Mandal R, Boeckxstaens GE, Bercik P, De Palma G, Reed DE, Wishart D, Vanner S, Dieleman LA.

Aliment Pharmacol Ther. 2019 Apr;49(8):1088-1089. doi: 10.1111/apt.15200. No abstract available.

PMID:
30920043
28.

Metabolomic identification of diagnostic serum-based biomarkers for advanced stage melanoma.

Bayci AWL, Baker DA, Somerset AE, Turkoglu O, Hothem Z, Callahan RE, Mandal R, Han B, Bjorndahl T, Wishart D, Bahado-Singh R, Graham SF, Keidan R.

Metabolomics. 2018 Aug 3;14(8):105. doi: 10.1007/s11306-018-1398-9.

PMID:
30830422
29.

Urine metabolic fingerprinting can be used to predict the risk of metritis and highlight the pathobiology of the disease in dairy cows.

Dervishi E, Zhang G, Hailemariam D, Mandal R, Wishart DS, Ametaj BN.

Metabolomics. 2018 Jun 8;14(6):83. doi: 10.1007/s11306-018-1379-z.

PMID:
30830348
30.

Solvent Composition Effects on the Structural Properties of the Aβ42 Monomer from the 3D-RISM-KH Molecular Theory of Solvation.

Blinov N, Wishart DS, Kovalenko A.

J Phys Chem B. 2019 Mar 21;123(11):2491-2506. doi: 10.1021/acs.jpcb.9b00480. Epub 2019 Mar 12.

PMID:
30811210
31.

Non-invasive differentiation of non-rejection kidney injury from acute rejection in pediatric renal transplant recipients.

Archdekin B, Sharma A, Gibson IW, Rush D, Wishart DS, Blydt-Hansen TD.

Pediatr Transplant. 2019 May;23(3):e13364. doi: 10.1111/petr.13364. Epub 2019 Feb 4.

PMID:
30719822
32.

Edible nuts deliver polyphenols and their transformation products to the large intestine: An in vitro fermentation model combining targeted/untargeted metabolomics.

Rocchetti G, Bhumireddy SR, Giuberti G, Mandal R, Lucini L, Wishart DS.

Food Res Int. 2019 Feb;116:786-794. doi: 10.1016/j.foodres.2018.09.012. Epub 2018 Sep 11.

PMID:
30717008
33.

Comparison of the metabolomic profiles of irritable bowel syndrome patients with ulcerative colitis patients and healthy controls: new insights into pathophysiology and potential biomarkers.

Keshteli AH, Madsen KL, Mandal R, Boeckxstaens GE, Bercik P, De Palma G, Reed DE, Wishart D, Vanner S, Dieleman LA.

Aliment Pharmacol Ther. 2019 Mar;49(6):723-732. doi: 10.1111/apt.15141. Epub 2019 Jan 31.

PMID:
30706502
34.

BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification.

Djoumbou-Feunang Y, Fiamoncini J, Gil-de-la-Fuente A, Greiner R, Manach C, Wishart DS.

J Cheminform. 2019 Jan 5;11(1):2. doi: 10.1186/s13321-018-0324-5.

35.

CEU Mass Mediator 3.0: A Metabolite Annotation Tool.

Gil-de-la-Fuente A, Godzien J, Saugar S, Garcia-Carmona R, Badran H, Wishart DS, Barbas C, Otero A.

J Proteome Res. 2019 Feb 1;18(2):797-802. doi: 10.1021/acs.jproteome.8b00720. Epub 2018 Dec 31.

PMID:
30574788
36.

A Simple and Convenient Synthesis of Unlabeled and 13C-Labeled 3-(3-Hydroxyphenyl)-3-Hydroxypropionic Acid and Its Quantification in Human Urine Samples.

Khaniani Y, Lipfert M, Bhattacharyya D, Perez Pineiro R, Zheng J, Wishart DS.

Metabolites. 2018 Nov 21;8(4). pii: E80. doi: 10.3390/metabo8040080.

37.

Artificial intelligence and amniotic fluid multiomics: prediction of perinatal outcome in asymptomatic women with short cervix.

Bahado-Singh RO, Sonek J, McKenna D, Cool D, Aydas B, Turkoglu O, Bjorndahl T, Mandal R, Wishart D, Friedman P, Graham SF, Yilmaz A.

Ultrasound Obstet Gynecol. 2019 Jul;54(1):110-118. doi: 10.1002/uog.20168.

PMID:
30381856
38.

Non-invasive Point-of-Care Device To Diagnose Acute Mesenteric Ischemia.

Abdelrasoul GN, MacKay S, Salim SY, Ismond KP, Tamura M, Khalifa C, Mannan E, Lin D, Mandal T, Montgomery RR, Wishart DS, Chen J, Khadaroo RG.

ACS Sens. 2018 Nov 26;3(11):2296-2302. doi: 10.1021/acssensors.8b00558. Epub 2018 Nov 5.

PMID:
30335977
39.

A sensitive, high-throughput LC-MS/MS method for measuring catecholamines in low volume serum.

Zheng J, Mandal R, Wishart DS.

Anal Chim Acta. 2018 Dec 11;1037:159-167. doi: 10.1016/j.aca.2018.01.021. Epub 2018 Jan 20.

PMID:
30292290
40.

Preface.

Wishart D, Xu G.

Anal Chim Acta. 2018 Dec 11;1037:1-2. doi: 10.1016/j.aca.2018.09.046. No abstract available.

PMID:
30292283
41.

Biomarker of food intake for assessing the consumption of dairy and egg products.

Münger LH, Garcia-Aloy M, Vázquez-Fresno R, Gille D, Rosana ARR, Passerini A, Soria-Florido MT, Pimentel G, Sajed T, Wishart DS, Andres Lacueva C, Vergères G, Praticò G.

Genes Nutr. 2018 Sep 29;13:26. doi: 10.1186/s12263-018-0615-5. eCollection 2018. Review.

42.

A simple in vitro assay for assessing the efficacy, mechanisms and kinetics of anti-prion fibril compounds.

Ladner-Keay CL, Ross L, Perez-Pineiro R, Zhang L, Bjorndahl TC, Cashman N, Wishart DS.

Prion. 2018;12(5-6):280-300. doi: 10.1080/19336896.2018.1525254. Epub 2018 Oct 9.

43.

Identification of Primary Natural Killer Cell Modulators by Chemical Library Screening with a Luciferase-Based Functional Assay.

Hayek S, Bekaddour N, Besson L, Alves de Sousa R, Pietrancosta N, Viel S, Smith N, Jacob Y, Nisole S, Mandal R, Wishart DS, Walzer T, Herbeuval JP, Vidalain PO.

SLAS Discov. 2019 Jan;24(1):25-37. doi: 10.1177/2472555218797078. Epub 2018 Sep 5.

PMID:
30184441
44.

Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies.

Ulaszewska MM, Weinert CH, Trimigno A, Portmann R, Andres Lacueva C, Badertscher R, Brennan L, Brunius C, Bub A, Capozzi F, Cialiè Rosso M, Cordero CE, Daniel H, Durand S, Egert B, Ferrario PG, Feskens EJM, Franceschi P, Garcia-Aloy M, Giacomoni F, Giesbertz P, González-Domínguez R, Hanhineva K, Hemeryck LY, Kopka J, Kulling SE, Llorach R, Manach C, Mattivi F, Migné C, Münger LH, Ott B, Picone G, Pimentel G, Pujos-Guillot E, Riccadonna S, Rist MJ, Rombouts C, Rubert J, Skurk T, Sri Harsha PSC, Van Meulebroek L, Vanhaecke L, Vázquez-Fresno R, Wishart D, Vergères G.

Mol Nutr Food Res. 2019 Jan;63(1):e1800384. doi: 10.1002/mnfr.201800384. Epub 2018 Oct 11. Review.

PMID:
30176196
45.

Erratum to Residue-specific mobility changes in soluble oligomers of the prion protein define regions involved in aggregation, BBAPAP (2018) 982-988.

Glaves JP, Ladner-Keay CL, Bjorndahl TC, Wishart DS, Sykes BD.

Biochim Biophys Acta Proteins Proteom. 2018 Nov;1866(11):1199-1200. doi: 10.1016/j.bbapap.2018.07.008. Epub 2018 Aug 1. No abstract available.

PMID:
30077003
46.

A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database.

Karu N, Deng L, Slae M, Guo AC, Sajed T, Huynh H, Wine E, Wishart DS.

Anal Chim Acta. 2018 Nov 7;1030:1-24. doi: 10.1016/j.aca.2018.05.031. Epub 2018 May 12. Review.

PMID:
30032758
47.

Residue-specific mobility changes in soluble oligomers of the prion protein define regions involved in aggregation.

Glaves JP, Ladner-Keay CL, Bjorndahl TC, Wishart DS, Sykes BD.

Biochim Biophys Acta Proteins Proteom. 2018 Jun 21. pii: S1570-9639(18)30096-7. doi: 10.1016/j.bbapap.2018.06.005. [Epub ahead of print] Erratum in: Biochim Biophys Acta Proteins Proteom. 2018 Nov;1866(11):1199-1200.

PMID:
29935976
48.

Fecal transplant from resveratrol-fed donors improves glycaemia and cardiovascular features of the metabolic syndrome in mice.

Kim TT, Parajuli N, Sung MM, Bairwa SC, Levasseur J, Soltys CM, Wishart DS, Madsen K, Schertzer JD, Dyck JRB.

Am J Physiol Endocrinol Metab. 2018 Oct 1;315(4):E511-E519. doi: 10.1152/ajpendo.00471.2017. Epub 2018 Jun 5.

49.

Validation of biomarkers of food intake-critical assessment of candidate biomarkers.

Dragsted LO, Gao Q, Scalbert A, Vergères G, Kolehmainen M, Manach C, Brennan L, Afman LA, Wishart DS, Andres Lacueva C, Garcia-Aloy M, Verhagen H, Feskens EJM, Praticò G.

Genes Nutr. 2018 May 30;13:14. doi: 10.1186/s12263-018-0603-9. eCollection 2018. Review.

50.

Non-invasive staging of chronic kidney allograft damage using urine metabolomic profiling.

Landsberg A, Sharma A, Gibson IW, Rush D, Wishart DS, Blydt-Hansen TD.

Pediatr Transplant. 2018 Aug;22(5):e13226. doi: 10.1111/petr.13226. Epub 2018 May 31.

PMID:
29855144

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