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Items: 1 to 50 of 65

1.

The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039.

Lamichhane B, Chua EG, Wise MJ, Laming C, Marshall BJ, Tay CY.

Gut Pathog. 2019 Feb 20;11:7. doi: 10.1186/s13099-019-0284-y. eCollection 2019.

2.

Analysis of core protein clusters identifies candidate variable sites conferring metronidazole resistance in Helicobacter pylori.

Chua EG, Debowski AW, Webberley KM, Peters F, Lamichhane B, Loke MF, Vadivelu J, Tay CY, Marshall BJ, Wise MJ.

Gastroenterol Rep (Oxf). 2019 Feb;7(1):42-49. doi: 10.1093/gastro/goy048. Epub 2019 Jan 2.

3.

Gastric Helicobacter pylori infection perturbs human oral microbiota.

Chua EG, Chong JY, Lamichhane B, Webberley KM, Marshall BJ, Wise MJ, Tay CY.

PeerJ. 2019 Jan 28;7:e6336. doi: 10.7717/peerj.6336. eCollection 2019.

4.

Bioinformatics Analysis of Metabolism Pathways of Archaeal Energy Reserves.

Wang L, Liu Q, Wu X, Huang Y, Wise MJ, Liu Z, Wang W, Hu J, Wang C.

Sci Rep. 2019 Jan 31;9(1):1034. doi: 10.1038/s41598-018-37768-0.

5.

Structure and Evolution of Glycogen Branching Enzyme N-Termini From Bacteria.

Wang L, Liu Q, Hu J, Asenso J, Wise MJ, Wu X, Ma C, Chen X, Yang J, Tang D.

Front Microbiol. 2019 Jan 14;9:3354. doi: 10.3389/fmicb.2018.03354. eCollection 2018.

6.

Defense with benefits? Ducking plants outperformed erect plants in the goldenrod Solidago gigantea in the absence of herbivory.

Wise MJ.

Am J Bot. 2018 Jun;105(6):1096-1103. doi: 10.1002/ajb2.1105. Epub 2018 Jun 24.

PMID:
29936699
7.

Distribution Patterns of Polyphosphate Metabolism Pathway and Its Relationships With Bacterial Durability and Virulence.

Wang L, Yan J, Wise MJ, Liu Q, Asenso J, Huang Y, Dai S, Liu Z, Du Y, Tang D.

Front Microbiol. 2018 Apr 24;9:782. doi: 10.3389/fmicb.2018.00782. eCollection 2018.

8.

Genomic epidemiology and population structure of Neisseria gonorrhoeae from remote highly endemic Western Australian populations.

Al Suwayyid BA, Coombs GW, Speers DJ, Pearson J, Wise MJ, Kahler CM.

BMC Genomics. 2018 Feb 27;19(1):165. doi: 10.1186/s12864-018-4557-5.

9.

The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence.

Wang L, Liu Z, Dai S, Yan J, Wise MJ.

Front Microbiol. 2017 Nov 3;8:2167. doi: 10.3389/fmicb.2017.02167. eCollection 2017.

10.

Constraints on the evolution of resistance to gall flies in Solidago altissima: resistance sometimes costs more than it is worth.

Wise MJ, Abrahamson WG.

New Phytol. 2017 Jul;215(1):423-433. doi: 10.1111/nph.14583. Epub 2017 May 8.

11.

dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees.

Wise MJ.

PLoS One. 2016 Nov 29;11(11):e0166991. doi: 10.1371/journal.pone.0166991. eCollection 2016.

12.

Quantum changes in Helicobacter pylori gene expression accompany host-adaptation.

Chua EG, Wise MJ, Khosravi Y, Seow SW, Amoyo AA, Pettersson S, Peters F, Tay CY, Perkins TT, Loke MF, Marshall BJ, Vadivelu J.

DNA Res. 2017 Feb 1;24(1):37-49. doi: 10.1093/dnares/dsw046.

13.

Costs of resistance and correlational selection in the multiple-herbivore community of Solanum carolinense.

Wise MJ, Rausher MD.

Evolution. 2016 Oct;70(10):2411-2420. doi: 10.1111/evo.13035. Epub 2016 Aug 24. No abstract available.

PMID:
27501350
14.

Consistent gene expression profiles in MexTAg transgenic mouse and wild type mouse asbestos-induced mesothelioma.

Robinson C, Dick IM, Wise MJ, Holloway A, Diyagama D, Robinson BW, Creaney J, Lake RA.

BMC Cancer. 2015 Dec 18;15:983. doi: 10.1186/s12885-015-1953-y.

15.

Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity.

Ariff A, Wise MJ, Kahler CM, Tay CY, Peters F, Perkins TT, Chang BJ.

BMC Genomics. 2015 Oct 24;16:860. doi: 10.1186/s12864-015-2104-1.

16.

Influence of in situ progressive N-terminal is still controversial truncation of glycogen branching enzyme in Escherichia coli DH5α on glycogen structure, accumulation, and bacterial viability.

Wang L, Regina A, Butardo VM Jr, Kosar-Hashemi B, Larroque O, Kahler CM, Wise MJ.

BMC Microbiol. 2015 May 7;15:96. doi: 10.1186/s12866-015-0421-9.

17.

Comparative analysis of the full genome of Helicobacter pylori isolate Sahul64 identifies genes of high divergence.

Lu W, Wise MJ, Tay CY, Windsor HM, Marshall BJ, Peacock C, Perkins T.

J Bacteriol. 2014 Mar;196(5):1073-83. doi: 10.1128/JB.01021-13. Epub 2013 Dec 27.

18.
19.

Mean protein evolutionary distance: a method for comparative protein evolution and its application.

Wise MJ.

PLoS One. 2013 Apr 15;8(4):e61276. doi: 10.1371/journal.pone.0061276. Print 2013.

20.

Predicting pseudoknotted structures across two RNA sequences.

Sperschneider J, Datta A, Wise MJ.

Bioinformatics. 2012 Dec 1;28(23):3058-65. doi: 10.1093/bioinformatics/bts575. Epub 2012 Oct 8.

21.

Coexpression of nuclear receptors and histone methylation modifying genes in the testis: implications for endocrine disruptor modes of action.

Anderson AM, Carter KW, Anderson D, Wise MJ.

PLoS One. 2012;7(4):e34158. doi: 10.1371/journal.pone.0034158. Epub 2012 Apr 4.

22.

Role of pro-oncogenic protein disulfide isomerase (PDI) family member anterior gradient 2 (AGR2) in the control of endoplasmic reticulum homeostasis.

Higa A, Mulot A, Delom F, Bouchecareilh M, Nguyên DT, Boismenu D, Wise MJ, Chevet E.

J Biol Chem. 2011 Dec 30;286(52):44855-68. doi: 10.1074/jbc.M111.275529. Epub 2011 Oct 24.

23.

Intrinsically disordered proteins as molecular shields.

Chakrabortee S, Tripathi R, Watson M, Schierle GS, Kurniawan DP, Kaminski CF, Wise MJ, Tunnacliffe A.

Mol Biosyst. 2012 Jan;8(1):210-9. doi: 10.1039/c1mb05263b. Epub 2011 Sep 9.

24.

Glycogen with short average chain length enhances bacterial durability.

Wang L, Wise MJ.

Naturwissenschaften. 2011 Sep;98(9):719-29. doi: 10.1007/s00114-011-0832-x. Epub 2011 Aug 2. Review.

PMID:
21808975
25.

Welcome to microbial informatics and experimentation.

Wise MJ, Wanner BL.

Microb Inform Exp. 2011 Jun 14;1(1):1. doi: 10.1186/2042-5783-1-1. No abstract available.

26.

Efficient funding: a path to improving Aboriginal healthcare in Australia?

Lloyd JE, Wise MJ.

Aust Health Rev. 2010 Nov;34(4):430-4. doi: 10.1071/AH09760.

PMID:
21108903
27.

Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.

Sperschneider J, Datta A, Wise MJ.

RNA. 2011 Jan;17(1):27-38. doi: 10.1261/rna.2394511. Epub 2010 Nov 22.

28.
29.

The role of nodding stems in the goldenrod-gall-fly interaction: A test of the "ducking" hypothesis.

Wise MJ, Abrahamson WG, Cole JA.

Am J Bot. 2010 Mar;97(3):525-9. doi: 10.3732/ajb.0900227. Epub 2010 Feb 19.

30.

Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae.

Reardon W, Chakrabortee S, Pereira TC, Tyson T, Banton MC, Dolan KM, Culleton BA, Wise MJ, Burnell AM, Tunnacliffe A.

BMC Mol Biol. 2010 Jan 19;11:6. doi: 10.1186/1471-2199-11-6.

31.

To duck or not to duck: resistance advantages and disadvantages of the candy-cane stem phenotype in tall goldenrod, Solidago altissima.

Wise MJ.

New Phytol. 2009 Aug;183(3):900-7. doi: 10.1111/j.1469-8137.2009.02879.x. Epub 2009 May 28.

32.

Ducking as a means of resistance to herbivory in tall goldenrod, Solidago altissima.

Wise MJ, Abrahamson WG.

Ecology. 2008 Dec;89(12):3275-81.

PMID:
19137934
33.

Bioinformatics and protein expression analyses implicate LEA proteins in the drought response of Collembola.

Bahrndorff S, Tunnacliffe A, Wise MJ, McGee B, Holmstrup M, Loeschcke V.

J Insect Physiol. 2009 Mar;55(3):210-7. doi: 10.1016/j.jinsphys.2008.11.010. Epub 2009 Jan 4.

PMID:
19100270
34.

Applying the limiting resource model to plant tolerance of apical meristem damage.

Wise MJ, Abrahamson WG.

Am Nat. 2008 Nov;172(5):635-47. doi: 10.1086/591691.

PMID:
18840070
35.

Nutrient stress and gall flies interact to affect floral-sex ratio in gynomonoecious Solidago altissima (Asteraceae).

Wise MJ, Coffey LE, Abrahamson WG.

Am J Bot. 2008 Oct;95(10):1233-9. doi: 10.3732/ajb.0800033.

36.

On quantifying tolerance of herbivory for comparative analyses.

Wise MJ, Carr DE.

Evolution. 2008 Sep;62(9):2429-34. doi: 10.1111/j.1558-5646.2008.00458.x. Epub 2008 Jul 14.

PMID:
18637836
37.

Changing shape: workforce and the implementation of Aboriginal health policy.

Lloyd JE, Wise MJ, Weeramanthri T.

Aust Health Rev. 2008 Feb;32(1):174-85.

PMID:
18241162
38.

Good mothers, bad mothers, and the nature of resistance to herbivory in Solidago altissima.

Wise MJ, Partelow JM, Everson KJ, Anselmo MK, Abrahamson WG.

Oecologia. 2008 Mar;155(2):257-66. Epub 2007 Nov 11.

PMID:
17994301
39.

Mind the gaps: evidence of bias in estimates of multiple sequence alignments.

Golubchik T, Wise MJ, Easteal S, Jermiin LS.

Mol Biol Evol. 2007 Nov;24(11):2433-42. Epub 2007 Aug 20.

PMID:
17709332
41.

The continuing conundrum of the LEA proteins.

Tunnacliffe A, Wise MJ.

Naturwissenschaften. 2007 Oct;94(10):791-812. Epub 2007 May 4. Review.

PMID:
17479232
42.
43.

Analysis of high throughput protein expression in Escherichia coli.

Benita Y, Wise MJ, Lok MC, Humphery-Smith I, Oosting RS.

Mol Cell Proteomics. 2006 Sep;5(9):1567-80. Epub 2006 Jul 4.

44.

Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria.

Telford MJ, Wise MJ, Gowri-Shankar V.

Mol Biol Evol. 2005 Apr;22(4):1129-36. Epub 2005 Feb 2.

PMID:
15689526
45.

Australian engagement: workshop recommendations.

Adams AI, Baume PE, Wise MJ, Ingram S, Macdonald HB, Reid EA, Reid MA.

Med J Aust. 2004 Feb 16;180(4):166-7. No abstract available.

PMID:
14960135
46.

POPP the question: what do LEA proteins do?

Wise MJ, Tunnacliffe A.

Trends Plant Sci. 2004 Jan;9(1):13-7. Review.

PMID:
14729214
48.

Regionalized GC content of template DNA as a predictor of PCR success.

Benita Y, Oosting RS, Lok MC, Wise MJ, Humphery-Smith I.

Nucleic Acids Res. 2003 Aug 15;31(16):e99.

49.

DiMSim: a discrete-event simulator of metabolic networks.

Xia XQ, Wise MJ.

J Chem Inf Comput Sci. 2003 May-Jun;43(3):1011-9.

PMID:
12767160
50.

Amyloidogenic nature of spider silk.

Kenney JM, Knight D, Wise MJ, Vollrath F.

Eur J Biochem. 2002 Aug;269(16):4159-63.

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