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Meningococcal Disease Associated prophage-like elements are present in Neisseria gonorrhoeae and some commensal Neisseria species.

Al Suwayyid BA, Rankine-Wilson L, Speers DJ, Wise MJ, Coombs GW, Kahler CM.

Genome Biol Evol. 2020 Feb 7. pii: evaa023. doi: 10.1093/gbe/evaa023. [Epub ahead of print]


A novel taxon selection method, aimed at minimizing recombination, clarifies the discovery of a new sub-population of Helicobacter pylori from Australia.

Lamichhane B, Wise MJ, Chua EG, Marshall BJ, Tay CY.

Evol Appl. 2019 Sep 18;13(2):278-289. doi: 10.1111/eva.12864. eCollection 2020 Feb.


Recent progress in the structure of glycogen serving as a durable energy reserve in bacteria.

Wang L, Wang M, Wise MJ, Liu Q, Yang T, Zhu Z, Li C, Tan X, Tang D, Wang W.

World J Microbiol Biotechnol. 2020 Jan 2;36(1):14. doi: 10.1007/s11274-019-2795-6. Review.


A Longitudinal, Population-Level, Big-Data Study of Helicobacter pylori-Related Disease across Western Australia.

Wise MJ, Lamichhane B, Webberley KM.

J Clin Med. 2019 Nov 1;8(11). pii: E1821. doi: 10.3390/jcm8111821.


Structural, biomechanical and hemodynamic assessment of the bladder wall in healthy subjects.

Volikova AI, Marshall BJ, Yin JMA, Goodwin R, Chow PE, Wise MJ.

Res Rep Urol. 2019 Sep 3;11:233-245. doi: 10.2147/RRU.S205383. eCollection 2019.


Adhesive latching and legless leaping in small, worm-like insect larvae.

Farley GM, Wise MJ, Harrison JS, Sutton GP, Kuo C, Patek SN.

J Exp Biol. 2019 Aug 8;222(Pt 15). pii: jeb201129. doi: 10.1242/jeb.201129.


Molecular Structure of Glycogen in Escherichia coli.

Wang L, Liu Q, Tan X, Wang Z, Wang M, Wise MJ, Li C, Ma C, Li E, Deng B, Du Y, Tang D, Gilbert RG.

Biomacromolecules. 2019 Jul 8;20(7):2821-2829. doi: 10.1021/acs.biomac.9b00586. Epub 2019 Jun 18.


Systematic Analysis of Metabolic Pathway Distributions of Bacterial Energy Reserves.

Wang L, Yang J, Huang Y, Liu Q, Xu Y, Piao X, Wise MJ.

G3 (Bethesda). 2019 Aug 8;9(8):2489-2496. doi: 10.1534/g3.119.400123.


The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039.

Lamichhane B, Chua EG, Wise MJ, Laming C, Marshall BJ, Tay CY.

Gut Pathog. 2019 Feb 20;11:7. doi: 10.1186/s13099-019-0284-y. eCollection 2019.


Analysis of core protein clusters identifies candidate variable sites conferring metronidazole resistance in Helicobacter pylori.

Chua EG, Debowski AW, Webberley KM, Peters F, Lamichhane B, Loke MF, Vadivelu J, Tay CY, Marshall BJ, Wise MJ.

Gastroenterol Rep (Oxf). 2019 Feb;7(1):42-49. doi: 10.1093/gastro/goy048. Epub 2019 Jan 2.


Gastric Helicobacter pylori infection perturbs human oral microbiota.

Chua EG, Chong JY, Lamichhane B, Webberley KM, Marshall BJ, Wise MJ, Tay CY.

PeerJ. 2019 Jan 28;7:e6336. doi: 10.7717/peerj.6336. eCollection 2019.


Bioinformatics Analysis of Metabolism Pathways of Archaeal Energy Reserves.

Wang L, Liu Q, Wu X, Huang Y, Wise MJ, Liu Z, Wang W, Hu J, Wang C.

Sci Rep. 2019 Jan 31;9(1):1034. doi: 10.1038/s41598-018-37768-0.


Structure and Evolution of Glycogen Branching Enzyme N-Termini From Bacteria.

Wang L, Liu Q, Hu J, Asenso J, Wise MJ, Wu X, Ma C, Chen X, Yang J, Tang D.

Front Microbiol. 2019 Jan 14;9:3354. doi: 10.3389/fmicb.2018.03354. eCollection 2018.


Distribution Patterns of Polyphosphate Metabolism Pathway and Its Relationships With Bacterial Durability and Virulence.

Wang L, Yan J, Wise MJ, Liu Q, Asenso J, Huang Y, Dai S, Liu Z, Du Y, Tang D.

Front Microbiol. 2018 Apr 24;9:782. doi: 10.3389/fmicb.2018.00782. eCollection 2018.


Genomic epidemiology and population structure of Neisseria gonorrhoeae from remote highly endemic Western Australian populations.

Al Suwayyid BA, Coombs GW, Speers DJ, Pearson J, Wise MJ, Kahler CM.

BMC Genomics. 2018 Feb 27;19(1):165. doi: 10.1186/s12864-018-4557-5.


The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence.

Wang L, Liu Z, Dai S, Yan J, Wise MJ.

Front Microbiol. 2017 Nov 3;8:2167. doi: 10.3389/fmicb.2017.02167. eCollection 2017.


Constraints on the evolution of resistance to gall flies in Solidago altissima: resistance sometimes costs more than it is worth.

Wise MJ, Abrahamson WG.

New Phytol. 2017 Jul;215(1):423-433. doi: 10.1111/nph.14583. Epub 2017 May 8.


dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees.

Wise MJ.

PLoS One. 2016 Nov 29;11(11):e0166991. doi: 10.1371/journal.pone.0166991. eCollection 2016.


Quantum changes in Helicobacter pylori gene expression accompany host-adaptation.

Chua EG, Wise MJ, Khosravi Y, Seow SW, Amoyo AA, Pettersson S, Peters F, Tay CY, Perkins TT, Loke MF, Marshall BJ, Vadivelu J.

DNA Res. 2017 Feb 1;24(1):37-49. doi: 10.1093/dnares/dsw046.


Costs of resistance and correlational selection in the multiple-herbivore community of Solanum carolinense.

Wise MJ, Rausher MD.

Evolution. 2016 Oct;70(10):2411-2420. doi: 10.1111/evo.13035. Epub 2016 Aug 24. No abstract available.


Consistent gene expression profiles in MexTAg transgenic mouse and wild type mouse asbestos-induced mesothelioma.

Robinson C, Dick IM, Wise MJ, Holloway A, Diyagama D, Robinson BW, Creaney J, Lake RA.

BMC Cancer. 2015 Dec 18;15:983. doi: 10.1186/s12885-015-1953-y.


Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity.

Ariff A, Wise MJ, Kahler CM, Tay CY, Peters F, Perkins TT, Chang BJ.

BMC Genomics. 2015 Oct 24;16:860. doi: 10.1186/s12864-015-2104-1.


Influence of in situ progressive N-terminal is still controversial truncation of glycogen branching enzyme in Escherichia coli DH5α on glycogen structure, accumulation, and bacterial viability.

Wang L, Regina A, Butardo VM Jr, Kosar-Hashemi B, Larroque O, Kahler CM, Wise MJ.

BMC Microbiol. 2015 May 7;15:96. doi: 10.1186/s12866-015-0421-9.


Comparative analysis of the full genome of Helicobacter pylori isolate Sahul64 identifies genes of high divergence.

Lu W, Wise MJ, Tay CY, Windsor HM, Marshall BJ, Peacock C, Perkins T.

J Bacteriol. 2014 Mar;196(5):1073-83. doi: 10.1128/JB.01021-13. Epub 2013 Dec 27.


Mean protein evolutionary distance: a method for comparative protein evolution and its application.

Wise MJ.

PLoS One. 2013 Apr 15;8(4):e61276. doi: 10.1371/journal.pone.0061276. Print 2013.


Predicting pseudoknotted structures across two RNA sequences.

Sperschneider J, Datta A, Wise MJ.

Bioinformatics. 2012 Dec 1;28(23):3058-65. doi: 10.1093/bioinformatics/bts575. Epub 2012 Oct 8.


Coexpression of nuclear receptors and histone methylation modifying genes in the testis: implications for endocrine disruptor modes of action.

Anderson AM, Carter KW, Anderson D, Wise MJ.

PLoS One. 2012;7(4):e34158. doi: 10.1371/journal.pone.0034158. Epub 2012 Apr 4.


Role of pro-oncogenic protein disulfide isomerase (PDI) family member anterior gradient 2 (AGR2) in the control of endoplasmic reticulum homeostasis.

Higa A, Mulot A, Delom F, Bouchecareilh M, Nguyên DT, Boismenu D, Wise MJ, Chevet E.

J Biol Chem. 2011 Dec 30;286(52):44855-68. doi: 10.1074/jbc.M111.275529. Epub 2011 Oct 24.


Intrinsically disordered proteins as molecular shields.

Chakrabortee S, Tripathi R, Watson M, Schierle GS, Kurniawan DP, Kaminski CF, Wise MJ, Tunnacliffe A.

Mol Biosyst. 2012 Jan;8(1):210-9. doi: 10.1039/c1mb05263b. Epub 2011 Sep 9.


Glycogen with short average chain length enhances bacterial durability.

Wang L, Wise MJ.

Naturwissenschaften. 2011 Sep;98(9):719-29. doi: 10.1007/s00114-011-0832-x. Epub 2011 Aug 2. Review.


Welcome to microbial informatics and experimentation.

Wise MJ, Wanner BL.

Microb Inform Exp. 2011 Jun 14;1(1):1. doi: 10.1186/2042-5783-1-1. No abstract available.


Efficient funding: a path to improving Aboriginal healthcare in Australia?

Lloyd JE, Wise MJ.

Aust Health Rev. 2010 Nov;34(4):430-4. doi: 10.1071/AH09760.


Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.

Sperschneider J, Datta A, Wise MJ.

RNA. 2011 Jan;17(1):27-38. doi: 10.1261/rna.2394511. Epub 2010 Nov 22.


The role of nodding stems in the goldenrod-gall-fly interaction: A test of the "ducking" hypothesis.

Wise MJ, Abrahamson WG, Cole JA.

Am J Bot. 2010 Mar;97(3):525-9. doi: 10.3732/ajb.0900227. Epub 2010 Feb 19.


Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae.

Reardon W, Chakrabortee S, Pereira TC, Tyson T, Banton MC, Dolan KM, Culleton BA, Wise MJ, Burnell AM, Tunnacliffe A.

BMC Mol Biol. 2010 Jan 19;11:6. doi: 10.1186/1471-2199-11-6.


To duck or not to duck: resistance advantages and disadvantages of the candy-cane stem phenotype in tall goldenrod, Solidago altissima.

Wise MJ.

New Phytol. 2009 Aug;183(3):900-7. doi: 10.1111/j.1469-8137.2009.02879.x. Epub 2009 May 28.


Ducking as a means of resistance to herbivory in tall goldenrod, Solidago altissima.

Wise MJ, Abrahamson WG.

Ecology. 2008 Dec;89(12):3275-81.


Bioinformatics and protein expression analyses implicate LEA proteins in the drought response of Collembola.

Bahrndorff S, Tunnacliffe A, Wise MJ, McGee B, Holmstrup M, Loeschcke V.

J Insect Physiol. 2009 Mar;55(3):210-7. doi: 10.1016/j.jinsphys.2008.11.010. Epub 2009 Jan 4.


Applying the limiting resource model to plant tolerance of apical meristem damage.

Wise MJ, Abrahamson WG.

Am Nat. 2008 Nov;172(5):635-47. doi: 10.1086/591691.


Nutrient stress and gall flies interact to affect floral-sex ratio in gynomonoecious Solidago altissima (Asteraceae).

Wise MJ, Coffey LE, Abrahamson WG.

Am J Bot. 2008 Oct;95(10):1233-9. doi: 10.3732/ajb.0800033.


On quantifying tolerance of herbivory for comparative analyses.

Wise MJ, Carr DE.

Evolution. 2008 Sep;62(9):2429-34. doi: 10.1111/j.1558-5646.2008.00458.x. Epub 2008 Jul 14.


Changing shape: workforce and the implementation of Aboriginal health policy.

Lloyd JE, Wise MJ, Weeramanthri T.

Aust Health Rev. 2008 Feb;32(1):174-85.


Good mothers, bad mothers, and the nature of resistance to herbivory in Solidago altissima.

Wise MJ, Partelow JM, Everson KJ, Anselmo MK, Abrahamson WG.

Oecologia. 2008 Mar;155(2):257-66. Epub 2007 Nov 11.


Mind the gaps: evidence of bias in estimates of multiple sequence alignments.

Golubchik T, Wise MJ, Easteal S, Jermiin LS.

Mol Biol Evol. 2007 Nov;24(11):2433-42. Epub 2007 Aug 20.


The continuing conundrum of the LEA proteins.

Tunnacliffe A, Wise MJ.

Naturwissenschaften. 2007 Oct;94(10):791-812. Epub 2007 May 4. Review.


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