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Murine colitis reveals a disease-associated bacteriophage community.

Duerkop BA, Kleiner M, Paez-Espino D, Zhu W, Bushnell B, Hassell B, Winter SE, Kyrpides NC, Hooper LV.

Nat Microbiol. 2018 Jul 23. doi: 10.1038/s41564-018-0210-y. [Epub ahead of print]


Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth.

Gillis CC, Hughes ER, Spiga L, Winter MG, Zhu W, Furtado de Carvalho T, Chanin RB, Behrendt CL, Hooper LV, Santos RL, Winter SE.

Cell Host Microbe. 2018 Apr 11;23(4):570. doi: 10.1016/j.chom.2018.03.013. No abstract available.


Precision editing of the gut microbiota ameliorates colitis.

Zhu W, Winter MG, Byndloss MX, Spiga L, Duerkop BA, Hughes ER, Büttner L, de Lima Romão E, Behrendt CL, Lopez CA, Sifuentes-Dominguez L, Huff-Hardy K, Wilson RP, Gillis CC, Tükel Ç, Koh AY, Burstein E, Hooper LV, Bäumler AJ, Winter SE.

Nature. 2018 Jan 11;553(7687):208-211. doi: 10.1038/nature25172. Epub 2018 Jan 3.


Bacteria Facilitate Enteric Virus Co-infection of Mammalian Cells and Promote Genetic Recombination.

Erickson AK, Jesudhasan PR, Mayer MJ, Narbad A, Winter SE, Pfeiffer JK.

Cell Host Microbe. 2018 Jan 10;23(1):77-88.e5. doi: 10.1016/j.chom.2017.11.007. Epub 2017 Dec 28.


Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth.

Gillis CC, Hughes ER, Spiga L, Winter MG, Zhu W, Furtado de Carvalho T, Chanin RB, Behrendt CL, Hooper LV, Santos RL, Winter SE.

Cell Host Microbe. 2018 Jan 10;23(1):54-64.e6. doi: 10.1016/j.chom.2017.11.006. Epub 2017 Dec 21. Erratum in: Cell Host Microbe. 2018 Apr 11;23 (4):570.


Utilization of host polyamines in alternatively activated macrophages promotes chronic infection by Brucella abortus.

Kerrinnes T, Winter MG, Young BM, Diaz-Ochoa VE, Winter SE, Tsolis RM.

Infect Immun. 2017 Dec 4. pii: IAI.00458-17. doi: 10.1128/IAI.00458-17. [Epub ahead of print]


An Oxidative Central Metabolism Enables Salmonella to Utilize Microbiota-Derived Succinate.

Spiga L, Winter MG, Furtado de Carvalho T, Zhu W, Hughes ER, Gillis CC, Behrendt CL, Kim J, Chessa D, Andrews-Polymenis HL, Beiting DP, Santos RL, Hooper LV, Winter SE.

Cell Host Microbe. 2017 Sep 13;22(3):291-301.e6. doi: 10.1016/j.chom.2017.07.018. Epub 2017 Aug 24.


Paneth cells secrete lysozyme via secretory autophagy during bacterial infection of the intestine.

Bel S, Pendse M, Wang Y, Li Y, Ruhn KA, Hassell B, Leal T, Winter SE, Xavier RJ, Hooper LV.

Science. 2017 Sep 8;357(6355):1047-1052. doi: 10.1126/science.aal4677. Epub 2017 Jul 27.


Microbiota-Derived Short-Chain Fatty Acids Modulate Expression of Campylobacter jejuni Determinants Required for Commensalism and Virulence.

Luethy PM, Huynh S, Ribardo DA, Winter SE, Parker CT, Hendrixson DR.

MBio. 2017 May 9;8(3). pii: e00407-17. doi: 10.1128/mBio.00407-17.


Microbial Respiration and Formate Oxidation as Metabolic Signatures of Inflammation-Associated Dysbiosis.

Hughes ER, Winter MG, Duerkop BA, Spiga L, Furtado de Carvalho T, Zhu W, Gillis CC, Büttner L, Smoot MP, Behrendt CL, Cherry S, Santos RL, Hooper LV, Winter SE.

Cell Host Microbe. 2017 Feb 8;21(2):208-219. doi: 10.1016/j.chom.2017.01.005.


Respiration of Microbiota-Derived 1,2-propanediol Drives Salmonella Expansion during Colitis.

Faber F, Thiennimitr P, Spiga L, Byndloss MX, Litvak Y, Lawhon S, Andrews-Polymenis HL, Winter SE, Bäumler AJ.

PLoS Pathog. 2017 Jan 5;13(1):e1006129. doi: 10.1371/journal.ppat.1006129. eCollection 2017 Jan.


Enterococcus faecalis: E. coli's Siderophore-Inducing Sidekick.

Hughes ER, Winter SE.

Cell Host Microbe. 2016 Oct 12;20(4):411-412. doi: 10.1016/j.chom.2016.09.018.


Virulence factors enhance Citrobacter rodentium expansion through aerobic respiration.

Lopez CA, Miller BM, Rivera-Chávez F, Velazquez EM, Byndloss MX, Chávez-Arroyo A, Lokken KL, Tsolis RM, Winter SE, Bäumler AJ.

Science. 2016 Sep 16;353(6305):1249-53. doi: 10.1126/science.aag3042. Epub 2016 Sep 15.


Energy Taxis toward Host-Derived Nitrate Supports a Salmonella Pathogenicity Island 1-Independent Mechanism of Invasion.

Rivera-Chávez F, Lopez CA, Zhang LF, García-Pastor L, Chávez-Arroyo A, Lokken KL, Tsolis RM, Winter SE, Bäumler AJ.

MBio. 2016 Jul 19;7(4). pii: e00960-16. doi: 10.1128/mBio.00960-16.


Bacterial Adrenergic Sensors Regulate Virulence of Enteric Pathogens in the Gut.

Moreira CG, Russell R, Mishra AA, Narayanan S, Ritchie JM, Waldor MK, Curtis MM, Winter SE, Weinshenker D, Sperandio V.

MBio. 2016 Jun 7;7(3). pii: e00826-16. doi: 10.1128/mBio.00826-16.


Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella.

Rivera-Chávez F, Zhang LF, Faber F, Lopez CA, Byndloss MX, Olsan EE, Xu G, Velazquez EM, Lebrilla CB, Winter SE, Bäumler AJ.

Cell Host Microbe. 2016 Apr 13;19(4):443-54. doi: 10.1016/j.chom.2016.03.004.


The flagellar regulator TviA reduces pyroptosis by Salmonella enterica serovar Typhi.

Winter SE, Winter MG, Atluri V, Poon V, Romão EL, Tsolis RM, Bäumler AJ.

Infect Immun. 2015 Apr;83(4):1546-55. doi: 10.1128/IAI.02803-14. Epub 2015 Feb 2.


The Vi capsular polysaccharide enables Salmonella enterica serovar typhi to evade microbe-guided neutrophil chemotaxis.

Wangdi T, Lee CY, Spees AM, Yu C, Kingsbury DD, Winter SE, Hastey CJ, Wilson RP, Heinrich V, Bäumler AJ.

PLoS Pathog. 2014 Aug 7;10(8):e1004306. doi: 10.1371/journal.ppat.1004306. eCollection 2014 Aug.


Salmonella enterica Serovar Typhi conceals the invasion-associated type three secretion system from the innate immune system by gene regulation.

Winter SE, Winter MG, Poon V, Keestra AM, Sterzenbach T, Faber F, Costa LF, Cassou F, Costa EA, Alves GE, Paixão TA, Santos RL, Bäumler AJ.

PLoS Pathog. 2014 Jul 3;10(7):e1004207. doi: 10.1371/journal.ppat.1004207. eCollection 2014 Jul.


Salmonella enterica serovar Typhi impairs CD4 T cell responses by reducing antigen availability.

Atif SM, Winter SE, Winter MG, McSorley SJ, Bäumler AJ.

Infect Immun. 2014 Jun;82(6):2247-54. doi: 10.1128/IAI.00020-14. Epub 2014 Mar 18.


Dysbiosis in the inflamed intestine: chance favors the prepared microbe.

Winter SE, Bäumler AJ.

Gut Microbes. 2014 Jan-Feb;5(1):71-3. doi: 10.4161/gmic.27129. Epub 2014 Jan 29.


Why related bacterial species bloom simultaneously in the gut: principles underlying the 'Like will to like' concept.

Winter SE, Bäumler AJ.

Cell Microbiol. 2014 Feb;16(2):179-84. doi: 10.1111/cmi.12245. Epub 2013 Dec 16. Review.


Colonization resistance: battle of the bugs or Ménage à Trois with the host?

Spees AM, Lopez CA, Kingsbury DD, Winter SE, Bäumler AJ.

PLoS Pathog. 2013;9(11):e1003730. doi: 10.1371/journal.ppat.1003730. Epub 2013 Nov 21. Review. No abstract available.


Should treatment for depression be based more on patient preference?

Winter SE, Barber JP.

Patient Prefer Adherence. 2013 Oct 9;7:1047-57. doi: 10.2147/PPA.S52746. eCollection 2013. Review.


Streptomycin-induced inflammation enhances Escherichia coli gut colonization through nitrate respiration.

Spees AM, Wangdi T, Lopez CA, Kingsbury DD, Xavier MN, Winter SE, Tsolis RM, Bäumler AJ.

MBio. 2013 Jul 2;4(4). pii: e00430-13. doi: 10.1128/mBio.00430-13.


Salmonella uses energy taxis to benefit from intestinal inflammation.

Rivera-Chávez F, Winter SE, Lopez CA, Xavier MN, Winter MG, Nuccio SP, Russell JM, Laughlin RC, Lawhon SD, Sterzenbach T, Bevins CL, Tsolis RM, Harshey R, Adams LG, Bäumler AJ.

PLoS Pathog. 2013;9(4):e1003267. doi: 10.1371/journal.ppat.1003267. Epub 2013 Apr 18.


Manipulation of small Rho GTPases is a pathogen-induced process detected by NOD1.

Keestra AM, Winter MG, Auburger JJ, Frässle SP, Xavier MN, Winter SE, Kim A, Poon V, Ravesloot MM, Waldenmaier JF, Tsolis RM, Eigenheer RA, Bäumler AJ.

Nature. 2013 Apr 11;496(7444):233-7. doi: 10.1038/nature12025. Epub 2013 Mar 31.


The dynamics of gut-associated microbial communities during inflammation.

Winter SE, Lopez CA, Bäumler AJ.

EMBO Rep. 2013 Apr;14(4):319-27. doi: 10.1038/embor.2013.27. Epub 2013 Mar 12. Review.


Host-derived nitrate boosts growth of E. coli in the inflamed gut.

Winter SE, Winter MG, Xavier MN, Thiennimitr P, Poon V, Keestra AM, Laughlin RC, Gomez G, Wu J, Lawhon SD, Popova IE, Parikh SJ, Adams LG, Tsolis RM, Stewart VJ, Bäumler AJ.

Science. 2013 Feb 8;339(6120):708-11. doi: 10.1126/science.1232467.


Very long O-antigen chains enhance fitness during Salmonella-induced colitis by increasing bile resistance.

Crawford RW, Keestra AM, Winter SE, Xavier MN, Tsolis RM, Tolstikov V, Bäumler AJ.

PLoS Pathog. 2012 Sep;8(9):e1002918. doi: 10.1371/journal.ppat.1002918. Epub 2012 Sep 20.


Human α-defensin 6 promotes mucosal innate immunity through self-assembled peptide nanonets.

Chu H, Pazgier M, Jung G, Nuccio SP, Castillo PA, de Jong MF, Winter MG, Winter SE, Wehkamp J, Shen B, Salzman NH, Underwood MA, Tsolis RM, Young GM, Lu W, Lehrer RI, Bäumler AJ, Bevins CL.

Science. 2012 Jul 27;337(6093):477-81. doi: 10.1126/science.1218831. Epub 2012 Jun 21.


Phage-mediated acquisition of a type III secreted effector protein boosts growth of salmonella by nitrate respiration.

Lopez CA, Winter SE, Rivera-Chávez F, Xavier MN, Poon V, Nuccio SP, Tsolis RM, Bäumler AJ.

MBio. 2012 Jun 12;3(3). pii: e00143-12. doi: 10.1128/mBio.00143-12. Print 2012.


Temporal expression of bacterial proteins instructs host CD4 T cell expansion and Th17 development.

Lee SJ, McLachlan JB, Kurtz JR, Fan D, Winter SE, Baumler AJ, Jenkins MK, McSorley SJ.

PLoS Pathog. 2012 Jan;8(1):e1002499. doi: 10.1371/journal.ppat.1002499. Epub 2012 Jan 19.


A Salmonella virulence factor activates the NOD1/NOD2 signaling pathway.

Keestra AM, Winter MG, Klein-Douwel D, Xavier MN, Winter SE, Kim A, Tsolis RM, Bäumler AJ.

MBio. 2011 Dec 20;2(6). pii: e00266-11. doi: 10.1128/mBio.00266-11. Print 2011.


Typhoid fever: "you can't hit what you can't see".

Wangdi T, Winter SE, Bäumler AJ.

Gut Microbes. 2012 Mar-Apr;3(2):88-92. doi: 10.4161/gmic.18602. Epub 2012 Mar 1. Review.


Salmonella, the host and its microbiota.

Thiennimitr P, Winter SE, Bäumler AJ.

Curr Opin Microbiol. 2012 Feb;15(1):108-14. doi: 10.1016/j.mib.2011.10.002. Epub 2011 Oct 24. Review.


Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota.

Thiennimitr P, Winter SE, Winter MG, Xavier MN, Tolstikov V, Huseby DL, Sterzenbach T, Tsolis RM, Roth JR, Bäumler AJ.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17480-5. doi: 10.1073/pnas.1107857108. Epub 2011 Oct 3.


Intestinal and chronic infections: Salmonella lifestyles in hostile environments.

Bäumler AJ, Winter SE, Thiennimitr P, Casadesús J.

Environ Microbiol Rep. 2011 Oct;3(5):508-17. doi: 10.1111/j.1758-2229.2011.00242.x. Epub 2011 Feb 17.


Salmonella exploits suicidal behavior of epithelial cells.

Winter SE, Bäumler AJ.

Front Microbiol. 2011 Mar 18;2:48. doi: 10.3389/fmicb.2011.00048. eCollection 2011. No abstract available.


Early MyD88-dependent induction of interleukin-17A expression during Salmonella colitis.

Keestra AM, Godinez I, Xavier MN, Winter MG, Winter SE, Tsolis RM, Bäumler AJ.

Infect Immun. 2011 Aug;79(8):3131-40. doi: 10.1128/IAI.00018-11. Epub 2011 May 16.


The Vi capsular polysaccharide prevents complement receptor 3-mediated clearance of Salmonella enterica serotype Typhi.

Wilson RP, Winter SE, Spees AM, Winter MG, Nishimori JH, Sanchez JF, Nuccio SP, Crawford RW, Tükel Ç, Bäumler AJ.

Infect Immun. 2011 Feb;79(2):830-7. doi: 10.1128/IAI.00961-10. Epub 2010 Nov 22.


Alternative endogenous protein processing via an autophagy-dependent pathway compensates for Yersinia-mediated inhibition of endosomal major histocompatibility complex class II antigen presentation.

Rüssmann H, Panthel K, Köhn B, Jellbauer S, Winter SE, Garbom S, Wolf-Watz H, Hoffmann S, Grauling-Halama S, Geginat G.

Infect Immun. 2010 Dec;78(12):5138-50. doi: 10.1128/IAI.00155-10. Epub 2010 Sep 27.


Gut inflammation provides a respiratory electron acceptor for Salmonella.

Winter SE, Thiennimitr P, Winter MG, Butler BP, Huseby DL, Crawford RW, Russell JM, Bevins CL, Adams LG, Tsolis RM, Roth JR, Bäumler AJ.

Nature. 2010 Sep 23;467(7314):426-9. doi: 10.1038/nature09415.


A rapid change in virulence gene expression during the transition from the intestinal lumen into tissue promotes systemic dissemination of Salmonella.

Winter SE, Winter MG, Godinez I, Yang HJ, Rüssmann H, Andrews-Polymenis HL, Bäumler AJ.

PLoS Pathog. 2010 Aug 19;6(8):e1001060. doi: 10.1371/journal.ppat.1001060.


The blessings and curses of intestinal inflammation.

Winter SE, Keestra AM, Tsolis RM, Bäumler AJ.

Cell Host Microbe. 2010 Jul 22;8(1):36-43. doi: 10.1016/j.chom.2010.06.003. Review.


A breathtaking feat: to compete with the gut microbiota, Salmonella drives its host to provide a respiratory electron acceptor.

Winter SE, Bäumler AJ.

Gut Microbes. 2011 Jan-Feb;2(1):58-60. doi: 10.4161/gmic.2.1.14911.


The TviA auxiliary protein renders the Salmonella enterica serotype Typhi RcsB regulon responsive to changes in osmolarity.

Winter SE, Winter MG, Thiennimitr P, Gerriets VA, Nuccio SP, Rüssmann H, Bäumler AJ.

Mol Microbiol. 2009 Oct;74(1):175-193. doi: 10.1111/j.1365-2958.2009.06859.x. Epub 2009 Aug 24.


The capsule-encoding viaB locus reduces intestinal inflammation by a Salmonella pathogenicity island 1-independent mechanism.

Haneda T, Winter SE, Butler BP, Wilson RP, Tükel C, Winter MG, Godinez I, Tsolis RM, Bäumler AJ.

Infect Immun. 2009 Jul;77(7):2932-42. doi: 10.1128/IAI.00172-09. Epub 2009 May 18.


Contribution of flagellin pattern recognition to intestinal inflammation during Salmonella enterica serotype typhimurium infection.

Winter SE, Thiennimitr P, Nuccio SP, Haneda T, Winter MG, Wilson RP, Russell JM, Henry T, Tran QT, Lawhon SD, Gomez G, Bevins CL, Rüssmann H, Monack DM, Adams LG, Bäumler AJ.

Infect Immun. 2009 May;77(5):1904-16. doi: 10.1128/IAI.01341-08. Epub 2009 Feb 23.


Simian immunodeficiency virus-induced mucosal interleukin-17 deficiency promotes Salmonella dissemination from the gut.

Raffatellu M, Santos RL, Verhoeven DE, George MD, Wilson RP, Winter SE, Godinez I, Sankaran S, Paixao TA, Gordon MA, Kolls JK, Dandekar S, Bäumler AJ.

Nat Med. 2008 Apr;14(4):421-8. doi: 10.1038/nm1743. Epub 2008 Mar 23.

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