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Items: 9

1.

Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloƫ festucae.

Winter DJ, Ganley ARD, Young CA, Liachko I, Schardl CL, Dupont PY, Berry D, Ram A, Scott B, Cox MP.

PLoS Genet. 2018 Oct 24;14(10):e1007467. doi: 10.1371/journal.pgen.1007467. eCollection 2018 Oct.

2.

accuMUlate: a mutation caller designed for mutation accumulation experiments.

Winter DJ, Wu SH, Howell AA, Azevedo RBR, Zufall RA, Cartwright RA.

Bioinformatics. 2018 Aug 1;34(15):2659-2660. doi: 10.1093/bioinformatics/bty165.

PMID:
29566129
3.

Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions.

Wu SH, Schwartz RS, Winter DJ, Conrad DF, Cartwright RA.

Bioinformatics. 2017 Aug 1;33(15):2322-2329. doi: 10.1093/bioinformatics/btx133.

4.

Interspecific hybridization causes long-term phylogenetic discordance between nuclear and mitochondrial genomes in freshwater fishes.

Wallis GP, Cameron-Christie SR, Kennedy HL, Palmer G, Sanders TR, Winter DJ.

Mol Ecol. 2017 Jun;26(12):3116-3127. doi: 10.1111/mec.14096. Epub 2017 Apr 12. Review.

PMID:
28295830
5.

Low Base-Substitution Mutation Rate in the Germline Genome of the Ciliate Tetrahymena thermophil.

Long H, Winter DJ, Chang AY, Sung W, Wu SH, Balboa M, Azevedo RBR, Cartwright RA, Lynch M, Zufall RA.

Genome Biol Evol. 2016 Dec 1;8(12):3629-3639. doi: 10.1093/gbe/evw223.

6.

Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia.

Winter DJ, Pacheco MA, Vallejo AF, Schwartz RS, Arevalo-Herrera M, Herrera S, Cartwright RA, Escalante AA.

PLoS Negl Trop Dis. 2015 Dec 28;9(12):e0004252. doi: 10.1371/journal.pntd.0004252. eCollection 2015 Dec.

7.

MMOD: an R library for the calculation of population differentiation statistics.

Winter DJ.

Mol Ecol Resour. 2012 Nov;12(6):1158-60. doi: 10.1111/j.1755-0998.2012.03174.x. Epub 2012 Aug 8.

PMID:
22883857
8.

Phylomineralogy of the coralline red algae: correlation of skeletal mineralogy with molecular phylogeny.

Smith AM, Sutherland JE, Kregting L, Farr TJ, Winter DJ.

Phytochemistry. 2012 Sep;81:97-108. doi: 10.1016/j.phytochem.2012.06.003. Epub 2012 Jul 13.

PMID:
22795764
9.

Multigene phylogeny of the southern bull-kelp genus Durvillaea (Phaeophyceae: Fucales).

Fraser CI, Winter DJ, Spencer HG, Waters JM.

Mol Phylogenet Evol. 2010 Dec;57(3):1301-11. doi: 10.1016/j.ympev.2010.10.011. Epub 2010 Oct 28.

PMID:
20971197

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