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Items: 24

1.

Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development.

Pawlak M, Kedzierska KZ, Migdal M, Nahia KA, Ramilowski JA, Bugajski L, Hashimoto K, Marconi A, Piwocka K, Carninci P, Winata CL.

Genome Res. 2019 Mar;29(3):506-519. doi: 10.1101/gr.244491.118. Epub 2019 Feb 13.

2.

The translational regulation of maternal mRNAs in time and space.

Winata CL, Korzh V.

FEBS Lett. 2018 Sep;592(17):3007-3023. doi: 10.1002/1873-3468.13183. Epub 2018 Jul 12. Review.

3.

Decoding the Heart through Next Generation Sequencing Approaches.

Pawlak M, Niescierowicz K, Winata CL.

Genes (Basel). 2018 Jun 7;9(6). pii: E289. doi: 10.3390/genes9060289. Review.

4.

Zebrafish Zic Genes Mediate Developmental Signaling.

Winata CL, Korzh V.

Adv Exp Med Biol. 2018;1046:157-177. doi: 10.1007/978-981-10-7311-3_9. Review.

PMID:
29442322
5.

Cytoplasmic polyadenylation-mediated translational control of maternal mRNAs directs maternal-to-zygotic transition.

Winata CL, Łapiński M, Pryszcz L, Vaz C, Bin Ismail MH, Nama S, Hajan HS, Lee SGP, Korzh V, Sampath P, Tanavde V, Mathavan S.

Development. 2018 Jan 8;145(1). pii: dev159566. doi: 10.1242/dev.159566.

6.

The canonical way to make a heart: β-catenin and plakoglobin in heart development and remodeling.

Piven OO, Winata CL.

Exp Biol Med (Maywood). 2017 Dec;242(18):1735-1745. doi: 10.1177/1535370217732737. Epub 2017 Sep 18. Review.

7.

Personalized genome sequencing coupled with iPSC technology identifies GTDC1 as a gene involved in neurodevelopmental disorders.

Aksoy I, Utami KH, Winata CL, Hillmer AM, Rouam SL, Briault S, Davila S, Stanton LW, Cacheux V.

Hum Mol Genet. 2017 Jan 15;26(2):367-382. doi: 10.1093/hmg/ddw393.

PMID:
28365779
8.

DANIO-CODE: Toward an Encyclopedia of DNA Elements in Zebrafish.

Tan H, Onichtchouk D, Winata C.

Zebrafish. 2016 Feb;13(1):54-60. doi: 10.1089/zeb.2015.1179. Epub 2015 Dec 15.

9.

Changing Faces of Transcriptional Regulation Reflected by Zic3.

Winata CL, Kondrychyn I, Korzh V.

Curr Genomics. 2015 Apr;16(2):117-27. doi: 10.2174/1389202916666150205124519.

10.

BAC transgenic zebrafish for transcriptional promoter and enhancer studies.

Kraus P, Winata CL, Lufkin T.

Methods Mol Biol. 2015;1227:245-58. doi: 10.1007/978-1-4939-1652-8_12.

PMID:
25239750
11.

Impaired development of neural-crest cell-derived organs and intellectual disability caused by MED13L haploinsufficiency.

Utami KH, Winata CL, Hillmer AM, Aksoy I, Long HT, Liany H, Chew EG, Mathavan S, Tay SK, Korzh V, Sarda P, Davila S, Cacheux V.

Hum Mutat. 2014 Nov;35(11):1311-20. doi: 10.1002/humu.22636. Epub 2014 Sep 23. Review.

PMID:
25137640
12.

Normalization of RNA-sequencing data from samples with varying mRNA levels.

Aanes H, Winata C, Moen LF, Østrup O, Mathavan S, Collas P, Rognes T, Aleström P.

PLoS One. 2014 Feb 25;9(2):e89158. doi: 10.1371/journal.pone.0089158. eCollection 2014.

13.

Genome wide analysis reveals Zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish.

Winata CL, Kondrychyn I, Kumar V, Srinivasan KG, Orlov Y, Ravishankar A, Prabhakar S, Stanton LW, Korzh V, Mathavan S.

PLoS Genet. 2013 Oct;9(10):e1003852. doi: 10.1371/journal.pgen.1003852. Epub 2013 Oct 31.

14.

Prepatterning of developmental gene expression by modified histones before zygotic genome activation.

Lindeman LC, Andersen IS, Reiner AH, Li N, Aanes H, Østrup O, Winata C, Mathavan S, Müller F, Aleström P, Collas P.

Dev Cell. 2011 Dec 13;21(6):993-1004. doi: 10.1016/j.devcel.2011.10.008. Epub 2011 Dec 1.

15.

The interaction of epithelial Ihha and mesenchymal Fgf10 in zebrafish esophageal and swimbladder development.

Korzh S, Winata CL, Zheng W, Yang S, Yin A, Ingham P, Korzh V, Gong Z.

Dev Biol. 2011 Nov 15;359(2):262-76. doi: 10.1016/j.ydbio.2011.08.024. Epub 2011 Sep 7.

16.

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition.

Aanes H, Winata CL, Lin CH, Chen JP, Srinivasan KG, Lee SG, Lim AY, Hajan HS, Collas P, Bourque G, Gong Z, Korzh V, Aleström P, Mathavan S.

Genome Res. 2011 Aug;21(8):1328-38. doi: 10.1101/gr.116012.110. Epub 2011 May 9.

17.

Wnt signaling is required for early development of zebrafish swimbladder.

Yin A, Korzh S, Winata CL, Korzh V, Gong Z.

PLoS One. 2011 Mar 30;6(3):e18431. doi: 10.1371/journal.pone.0018431.

18.

Expression of components of Wnt and Hedgehog pathways in different tissue layers during lung development in Xenopus laevis.

Yin A, Winata CL, Korzh S, Korzh V, Gong Z.

Gene Expr Patterns. 2010 Oct-Dec;10(7-8):338-44. doi: 10.1016/j.gep.2010.07.005. Epub 2010 Aug 1.

PMID:
20682360
19.

Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation.

Ung CY, Lam SH, Hlaing MM, Winata CL, Korzh S, Mathavan S, Gong Z.

BMC Genomics. 2010 Mar 30;11:212. doi: 10.1186/1471-2164-11-212.

20.

Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.

Lindeman LC, Winata CL, Aanes H, Mathavan S, Alestrom P, Collas P.

Int J Dev Biol. 2010;54(5):803-13. doi: 10.1387/ijdb.103081ll.

21.

The role of vasculature and blood circulation in zebrafish swimbladder development.

Winata CL, Korzh S, Kondrychyn I, Korzh V, Gong Z.

BMC Dev Biol. 2010 Jan 14;10:3. doi: 10.1186/1471-213X-10-3.

22.

Development of zebrafish swimbladder: The requirement of Hedgehog signaling in specification and organization of the three tissue layers.

Winata CL, Korzh S, Kondrychyn I, Zheng W, Korzh V, Gong Z.

Dev Biol. 2009 Jul 15;331(2):222-36. doi: 10.1016/j.ydbio.2009.04.035. Epub 2009 May 5.

23.

Requirement of vasculogenesis and blood circulation in late stages of liver growth in zebrafish.

Korzh S, Pan X, Garcia-Lecea M, Winata CL, Pan X, Wohland T, Korzh V, Gong Z.

BMC Dev Biol. 2008 Sep 16;8:84. doi: 10.1186/1471-213X-8-84.

24.

Transcriptome kinetics of arsenic-induced adaptive response in zebrafish liver.

Lam SH, Winata CL, Tong Y, Korzh S, Lim WS, Korzh V, Spitsbergen J, Mathavan S, Miller LD, Liu ET, Gong Z.

Physiol Genomics. 2006 Nov 27;27(3):351-61. Epub 2006 Aug 1.

PMID:
16882884

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