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Items: 24

1.

Genome Sequence of a Single-Stranded DNA Virus Identified in Gila Monster Feces.

Somayaji V, DeNardo D, Wilson Sayres MA, Blake M, Waits K, Fontenele RS, Kraberger S, Varsani A.

Microbiol Resour Announc. 2018 Aug 23;7(7). pii: e00925-18. doi: 10.1128/MRA.00925-18. eCollection 2018 Aug.

2.

The synthetic histone-binding regulator protein PcTF activates interferon genes in breast cancer cells.

Olney KC, Nyer DB, Vargas DA, Wilson Sayres MA, Haynes KA.

BMC Syst Biol. 2018 Sep 25;12(1):83. doi: 10.1186/s12918-018-0608-4.

3.

Author Correction: 137 ancient human genomes from across the Eurasian steppes.

de Barros Damgaard P, Marchi N, Rasmussen S, Peyrot M, Renaud G, Korneliussen T, Moreno-Mayar JV, Pedersen MW, Goldberg A, Usmanova E, Baimukhanov N, Loman V, Hedeager L, Pedersen AG, Nielsen K, Afanasiev G, Akmatov K, Aldashev A, Alpaslan A, Baimbetov G, Bazaliiskii VI, Beisenov A, Boldbaatar B, Boldgiv B, Dorzhu C, Ellingvag S, Erdenebaatar D, Dajani R, Dmitriev E, Evdokimov V, Frei KM, Gromov A, Goryachev A, Hakonarson H, Hegay T, Khachatryan Z, Khaskhanov R, Kitov E, Kolbina A, Kubatbek T, Kukushkin A, Kukushkin I, Lau N, Margaryan A, Merkyte I, Mertz IV, Mertz VK, Mijiddorj E, Moiyesev V, Mukhtarova G, Nurmukhanbetov B, Orozbekova Z, Panyushkina I, Pieta K, Smrčka V, Shevnina I, Logvin A, Sjogren KG, Štolcova T, Taravella AM, Tashbaeva K, Tkachev A, Tulegenov T, Voyakin D, Yepiskoposyan L, Undrakhbold S, Varfolomeev V, Weber A, Wilson Sayres MA, Kradin N, Allentoft ME, Orlando L, Nielsen R, Sikora M, Heyer E, Kristiansen K, Willerslev E.

Nature. 2018 Nov;563(7729):E16. doi: 10.1038/s41586-018-0488-1.

PMID:
30166629
4.

Human Papilloma Virus Specific Immunogenicity and Dysfunction of CD8+ T Cells in Head and Neck Cancer.

Krishna S, Ulrich P, Wilson E, Parikh F, Narang P, Yang S, Read AK, Kim-Schulze S, Park JG, Posner M, Wilson Sayres MA, Sikora A, Anderson KS.

Cancer Res. 2018 Nov 1;78(21):6159-6170. doi: 10.1158/0008-5472.CAN-18-0163. Epub 2018 Aug 28.

PMID:
30154146
5.

The association of genomic lesions and PD-1/PD-L1 expression in resected triple-negative breast cancers.

Barrett MT, Lenkiewicz E, Malasi S, Basu A, Yearley JH, Annamalai L, McCullough AE, Kosiorek HE, Narang P, Wilson Sayres MA, Chen M, Anderson KS, Pockaj BA.

Breast Cancer Res. 2018 Jul 11;20(1):71. doi: 10.1186/s13058-018-1004-0.

6.

Bioinformatics core competencies for undergraduate life sciences education.

Wilson Sayres MA, Hauser C, Sierk M, Robic S, Rosenwald AG, Smith TM, Triplett EW, Williams JJ, Dinsdale E, Morgan WR, Burnette JM 3rd, Donovan SS, Drew JC, Elgin SCR, Fowlks ER, Galindo-Gonzalez S, Goodman AL, Grandgenett NF, Goller CC, Jungck JR, Newman JD, Pearson W, Ryder EF, Tosado-Acevedo R, Tapprich W, Tobin TC, Toro-Martínez A, Welch LR, Wright R, Barone L, Ebenbach D, McWilliams M, Olney KC, Pauley MA.

PLoS One. 2018 Jun 5;13(6):e0196878. doi: 10.1371/journal.pone.0196878. eCollection 2018.

7.

137 ancient human genomes from across the Eurasian steppes.

Damgaard PB, Marchi N, Rasmussen S, Peyrot M, Renaud G, Korneliussen T, Moreno-Mayar JV, Pedersen MW, Goldberg A, Usmanova E, Baimukhanov N, Loman V, Hedeager L, Pedersen AG, Nielsen K, Afanasiev G, Akmatov K, Aldashev A, Alpaslan A, Baimbetov G, Bazaliiskii VI, Beisenov A, Boldbaatar B, Boldgiv B, Dorzhu C, Ellingvag S, Erdenebaatar D, Dajani R, Dmitriev E, Evdokimov V, Frei KM, Gromov A, Goryachev A, Hakonarson H, Hegay T, Khachatryan Z, Khaskhanov R, Kitov E, Kolbina A, Kubatbek T, Kukushkin A, Kukushkin I, Lau N, Margaryan A, Merkyte I, Mertz IV, Mertz VK, Mijiddorj E, Moiyesev V, Mukhtarova G, Nurmukhanbetov B, Orozbekova Z, Panyushkina I, Pieta K, Smrčka V, Shevnina I, Logvin A, Sjögren KG, Štolcová T, Taravella AM, Tashbaeva K, Tkachev A, Tulegenov T, Voyakin D, Yepiskoposyan L, Undrakhbold S, Varfolomeev V, Weber A, Wilson Sayres MA, Kradin N, Allentoft ME, Orlando L, Nielsen R, Sikora M, Heyer E, Kristiansen K, Willerslev E.

Nature. 2018 May;557(7705):369-374. doi: 10.1038/s41586-018-0094-2. Epub 2018 May 9. Erratum in: Nature. 2018 Aug 30;:.

PMID:
29743675
8.

Genetic Diversity on the Sex Chromosomes.

Wilson Sayres MA.

Genome Biol Evol. 2018 Apr 1;10(4):1064-1078. doi: 10.1093/gbe/evy039. Review.

9.

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards.

Tollis M, Hutchins ED, Stapley J, Rupp SM, Eckalbar WL, Maayan I, Lasku E, Infante CR, Dennis SR, Robertson JA, May CM, Crusoe MR, Bermingham E, DeNardo DF, Hsieh ST, Kulathinal RJ, McMillan WO, Menke DB, Pratt SC, Rawls JA, Sanjur O, Wilson-Rawls J, Wilson Sayres MA, Fisher RE, Kusumi K.

Genome Biol Evol. 2018 Feb 1;10(2):489-506. doi: 10.1093/gbe/evy013.

10.

EvSex16: Evolutionary Genomics of Sex.

Olney KC, Narang P, Taravella AM, Webster TH, Wilson Sayres MA.

J Hered. 2017 Oct 30;108(7):707-708. doi: 10.1093/jhered/esx084. No abstract available.

PMID:
29096011
11.

Evolution of Dosage Compensation in Anolis carolinensis, a Reptile with XX/XY Chromosomal Sex Determination.

Rupp SM, Webster TH, Olney KC, Hutchins ED, Kusumi K, Wilson Sayres MA.

Genome Biol Evol. 2017 Jan 1;9(1):231-240. doi: 10.1093/gbe/evw263.

12.

Variable Autosomal and X Divergence Near and Far from Genes Affects Estimates of Male Mutation Bias in Great Apes.

Narang P, Wilson Sayres MA.

Genome Biol Evol. 2016 Dec 31;8(11):3393-3405. doi: 10.1093/gbe/evw232.

13.

Genomic analyses inform on migration events during the peopling of Eurasia.

Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Wilson Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GNN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Skaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JTS, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanović D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M.

Nature. 2016 Oct 13;538(7624):238-242. doi: 10.1038/nature19792. Epub 2016 Sep 21.

14.

Genomic signatures of sex-biased demography: progress and prospects.

Webster TH, Wilson Sayres MA.

Curr Opin Genet Dev. 2016 Dec;41:62-71. doi: 10.1016/j.gde.2016.08.002. Epub 2016 Sep 5. Review.

PMID:
27599147
15.

Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.

Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, Gymrek M, Malhotra A, Louzada S, Desalle R, Ritchie GR, Cerveira E, Fitzgerald TW, Garrison E, Marcketta A, Mittelman D, Romanovitch M, Zhang C, Zheng-Bradley X, Abecasis GR, McCarroll SA, Flicek P, Underhill PA, Coin L, Zerbino DR, Yang F, Lee C, Clarke L, Auton A, Erlich Y, Handsaker RE; 1000 Genomes Project Consortium, Bustamante CD, Tyler-Smith C.

Nat Genet. 2016 Jun;48(6):593-9. doi: 10.1038/ng.3559. Epub 2016 Apr 25. Review.

16.

Genetic Diversity on the Human X Chromosome Does Not Support a Strict Pseudoautosomal Boundary.

Cotter DJ, Brotman SM, Wilson Sayres MA.

Genetics. 2016 May;203(1):485-92. doi: 10.1534/genetics.114.172692. Epub 2016 Mar 23.

17.

A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T.

Genome Res. 2015 Apr;25(4):459-66. doi: 10.1101/gr.186684.114. Epub 2015 Mar 13.

18.

Natural selection reduced diversity on human y chromosomes.

Wilson Sayres MA, Lohmueller KE, Nielsen R.

PLoS Genet. 2014 Jan;10(1):e1004064. doi: 10.1371/journal.pgen.1004064. Epub 2014 Jan 9.

19.

Detecting evolutionary strata on the human x chromosome in the absence of gametologous y-linked sequences.

Pandey RS, Wilson Sayres MA, Azad RK.

Genome Biol Evol. 2013;5(10):1863-71. doi: 10.1093/gbe/evt139.

20.

A scan for human-specific relaxation of negative selection reveals unexpected polymorphism in proteasome genes.

Somel M, Wilson Sayres MA, Jordan G, Huerta-Sanchez E, Fumagalli M, Ferrer-Admetlla A, Nielsen R.

Mol Biol Evol. 2013 Aug;30(8):1808-15. doi: 10.1093/molbev/mst098. Epub 2013 May 22.

21.

Gene survival and death on the human Y chromosome.

Wilson Sayres MA, Makova KD.

Mol Biol Evol. 2013 Apr;30(4):781-7. doi: 10.1093/molbev/mss267. Epub 2012 Dec 4.

22.

HGV2011: personalized genomic medicine meets the incidentalome.

Wilson Sayres MA, Brookes AJ, Chanock SJ, Cheung VG, Goldstein DB, Jin L, Kwok PY.

Hum Mutat. 2012 Mar;33(3):582-5. doi: 10.1002/humu.22008. Epub 2012 Jan 17.

23.

Genome analyses substantiate male mutation bias in many species.

Wilson Sayres MA, Makova KD.

Bioessays. 2011 Dec;33(12):938-45. doi: 10.1002/bies.201100091. Epub 2011 Oct 18. Review.

24.

Do variations in substitution rates and male mutation bias correlate with life-history traits? A study of 32 mammalian genomes.

Wilson Sayres MA, Venditti C, Pagel M, Makova KD.

Evolution. 2011 Oct;65(10):2800-15. doi: 10.1111/j.1558-5646.2011.01337.x. Epub 2011 Jun 20.

PMID:
21967423

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