Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 37

1.

Large-Scale Whole-Genome Sequencing of Three Diverse Asian Populations in Singapore.

Wu D, Dou J, Chai X, Bellis C, Wilm A, Shih CC, Soon WWJ, Bertin N, Lin CB, Khor CC, DeGiorgio M, Cheng S, Bao L, Karnani N, Hwang WYK, Davila S, Tan P, Shabbir A, Moh A, Tan EK, Foo JN, Goh LL, Leong KP, Foo RSY, Lam CSP, Richards AM, Cheng CY, Aung T, Wong TY, Ng HH; SG10K Consortium, Liu J, Wang C.

Cell. 2019 Oct 17;179(3):736-749.e15. doi: 10.1016/j.cell.2019.09.019.

PMID:
31626772
2.

Skin Doctor: Machine Learning Models for Skin Sensitization Prediction that Provide Estimates and Indicators of Prediction Reliability.

Wilm A, Stork C, Bauer C, Schepky A, Kühnl J, Kirchmair J.

Int J Mol Sci. 2019 Sep 28;20(19). pii: E4833. doi: 10.3390/ijms20194833.

3.

Structure mapping of dengue and Zika viruses reveals functional long-range interactions.

Huber RG, Lim XN, Ng WC, Sim AYL, Poh HX, Shen Y, Lim SY, Sundstrom KB, Sun X, Aw JG, Too HK, Boey PH, Wilm A, Chawla T, Choy MM, Jiang L, de Sessions PF, Loh XJ, Alonso S, Hibberd M, Nagarajan N, Ooi EE, Bond PJ, Sessions OM, Wan Y.

Nat Commun. 2019 Mar 29;10(1):1408. doi: 10.1038/s41467-019-09391-8.

4.

Computational approaches for skin sensitization prediction.

Wilm A, Kühnl J, Kirchmair J.

Crit Rev Toxicol. 2018 Oct;48(9):738-760. doi: 10.1080/10408444.2018.1528207. Epub 2018 Nov 29. Review.

PMID:
30488745
5.

Human pharyngeal microbiota in age-related macular degeneration.

Ho EXP, Cheung CMG, Sim S, Chu CW, Wilm A, Lin CB, Mathur R, Wong D, Chan CM, Bhagarva M, Laude A, Lim TH, Wong TY, Cheng CY, Davila S, Hibberd M.

PLoS One. 2018 Aug 8;13(8):e0201768. doi: 10.1371/journal.pone.0201768. eCollection 2018.

6.

Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history.

Zhu YO, Aw PPK, de Sessions PF, Hong S, See LX, Hong LZ, Wilm A, Li CH, Hue S, Lim SG, Nagarajan N, Burkholder WF, Hibberd M.

BMC Genomics. 2017 Oct 27;18(1):829. doi: 10.1186/s12864-017-4217-1.

7.

Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare.

Chng KR, Tay AS, Li C, Ng AH, Wang J, Suri BK, Matta SA, McGovern N, Janela B, Wong XF, Sio YY, Au BV, Wilm A, De Sessions PF, Lim TC, Tang MB, Ginhoux F, Connolly JE, Lane EB, Chew FT, Common JE, Nagarajan N.

Nat Microbiol. 2016 Jul 11;1(9):16106. doi: 10.1038/nmicrobiol.2016.106.

PMID:
27562258
8.

INC-Seq: accurate single molecule reads using nanopore sequencing.

Li C, Chng KR, Boey EJ, Ng AH, Wilm A, Nagarajan N.

Gigascience. 2016 Aug 2;5(1):34. doi: 10.1186/s13742-016-0140-7.

9.

Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma.

Chng KR, Chan SH, Ng AHQ, Li C, Jusakul A, Bertrand D, Wilm A, Choo SP, Tan DMY, Lim KH, Soetinko R, Ong CK, Duda DG, Dima S, Popescu I, Wongkham C, Feng Z, Yeoh KG, Teh BT, Yongvanit P, Wongkham S, Bhudhisawasdi V, Khuntikeo N, Tan P, Pairojkul C, Ngeow J, Nagarajan N.

EBioMedicine. 2016 Jun;8:195-202. doi: 10.1016/j.ebiom.2016.04.034. Epub 2016 May 6.

10.

In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation.

Aw JG, Shen Y, Wilm A, Sun M, Lim XN, Boon KL, Tapsin S, Chan YS, Tan CP, Sim AY, Zhang T, Susanto TT, Fu Z, Nagarajan N, Wan Y.

Mol Cell. 2016 May 19;62(4):603-17. doi: 10.1016/j.molcel.2016.04.028. Epub 2016 May 12.

11.

Fast and sensitive mapping of nanopore sequencing reads with GraphMap.

Sović I, Šikić M, Wilm A, Fenlon SN, Chen S, Nagarajan N.

Nat Commun. 2016 Apr 15;7:11307. doi: 10.1038/ncomms11307.

12.

Direct whole-genome deep-sequencing of human respiratory syncytial virus A and B from Vietnamese children identifies distinct patterns of inter- and intra-host evolution.

Do LA, Wilm A, Van Doorn HR, Lam HM, Sim S, Sukumaran R, Tran AT, Nguyen BH, Tran TT, Tran QH, Vo QB, Dac NA, Trinh HN, Nguyen TT, Binh BT, Le K, Nguyen MT, Thai QT, Vo TV, Ngo NQ, Dang TK, Cao NH, Tran TV, Ho LV, Farrar J, Jong Md, Chen S, Nagarajan N, Bryant JE, Hibberd ML.

J Gen Virol. 2015 Dec;96(12):3470-83.

13.

Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints.

Sessions OM, Wilm A, Kamaraj US, Choy MM, Chow A, Chong Y, Ong XM, Nagarajan N, Cook AR, Ooi EE.

PLoS Negl Trop Dis. 2015 Sep 1;9(9):e0004044. doi: 10.1371/journal.pntd.0004044. eCollection 2015.

14.

Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission.

Sim S, Aw PP, Wilm A, Teoh G, Hue KD, Nguyen NM, Nagarajan N, Simmons CP, Hibberd ML.

PLoS Negl Trop Dis. 2015 Sep 1;9(9):e0004052. doi: 10.1371/journal.pntd.0004052. eCollection 2015.

15.

Photoallergy.

Wilm A, Berneburg M.

J Dtsch Dermatol Ges. 2015 Jan;13(1):7-12; quiz 13. doi: 10.1111/ddg.12535. English, German.

PMID:
25640484
16.

BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads.

Hong LZ, Hong S, Wong HT, Aw PP, Cheng Y, Wilm A, de Sessions PF, Lim SG, Nagarajan N, Hibberd ML, Quake SR, Burkholder WF.

Genome Biol. 2014;15(11):517.

17.

Draft Genome Sequence of Polychlorinated Biphenyl-Dechlorinating Dehalococcoides mccartyi Strain SG1, Which Carries a Circular Putative Plasmid.

Wang S, Chng KR, Wu C, Wilm A, Nagarajan N, He J.

Genome Announc. 2014 Oct 2;2(5). pii: e00901-14. doi: 10.1128/genomeA.00901-14.

18.

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls.

Wang S, Chng KR, Wilm A, Zhao S, Yang KL, Nagarajan N, He J.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12103-8. doi: 10.1073/pnas.1404845111. Epub 2014 Jul 15.

19.

Next-generation whole genome sequencing of dengue virus.

Aw PP, de Sessions PF, Wilm A, Hoang LT, Nagarajan N, Sessions OM, Hibberd ML.

Methods Mol Biol. 2014;1138:175-95. doi: 10.1007/978-1-4939-0348-1_12.

PMID:
24696338
20.

Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences.

Ong SH, Kukkillaya VU, Wilm A, Lay C, Ho EX, Low L, Hibberd ML, Nagarajan N.

PLoS One. 2013 Apr 8;8(4):e60811. doi: 10.1371/journal.pone.0060811. Print 2013.

21.

Making automated multiple alignments of very large numbers of protein sequences.

Sievers F, Dineen D, Wilm A, Higgins DG.

Bioinformatics. 2013 Apr 15;29(8):989-95. doi: 10.1093/bioinformatics/btt093. Epub 2013 Feb 21.

PMID:
23428640
22.

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets.

Wilm A, Aw PP, Bertrand D, Yeo GH, Ong SH, Wong CH, Khor CC, Petric R, Hibberd ML, Nagarajan N.

Nucleic Acids Res. 2012 Dec;40(22):11189-201. doi: 10.1093/nar/gks918. Epub 2012 Oct 12.

23.

A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients.

Nguyen NM, Tran CN, Phung LK, Duong KT, Huynh Hle A, Farrar J, Nguyen QT, Tran HT, Nguyen CV, Merson L, Hoang LT, Hibberd ML, Aw PP, Wilm A, Nagarajan N, Nguyen DT, Pham MP, Nguyen TT, Javanbakht H, Klumpp K, Hammond J, Petric R, Wolbers M, Nguyen CT, Simmons CP.

J Infect Dis. 2013 May 1;207(9):1442-50. doi: 10.1093/infdis/jis470. Epub 2012 Jul 17.

24.

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG.

Mol Syst Biol. 2011 Oct 11;7:539. doi: 10.1038/msb.2011.75.

25.

BlastR--fast and accurate database searches for non-coding RNAs.

Bussotti G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C.

Nucleic Acids Res. 2011 Sep 1;39(16):6886-95. doi: 10.1093/nar/gkr335. Epub 2011 May 30.

26.

Sequence embedding for fast construction of guide trees for multiple sequence alignment.

Blackshields G, Sievers F, Shi W, Wilm A, Higgins DG.

Algorithms Mol Biol. 2010 May 14;5:21. doi: 10.1186/1748-7188-5-21.

27.

High DNA melting temperature predicts transcription start site location in human and mouse.

Dineen DG, Wilm A, Cunningham P, Higgins DG.

Nucleic Acids Res. 2009 Dec;37(22):7360-7. doi: 10.1093/nar/gkp821.

28.

R-Coffee: a web server for accurately aligning noncoding RNA sequences.

Moretti S, Wilm A, Higgins DG, Xenarios I, Notredame C.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W10-3. doi: 10.1093/nar/gkn278. Epub 2008 May 15.

29.

Fast embedding methods for clustering tens of thousands of sequences.

Blackshields G, Larkin M, Wallace IM, Wilm A, Higgins DG.

Comput Biol Chem. 2008 Aug;32(4):282-6. doi: 10.1016/j.compbiolchem.2008.03.005. Epub 2008 Mar 26.

PMID:
18450519
30.

ConStruct: Improved construction of RNA consensus structures.

Wilm A, Linnenbrink K, Steger G.

BMC Bioinformatics. 2008 Apr 28;9:219. doi: 10.1186/1471-2105-9-219.

31.

R-Coffee: a method for multiple alignment of non-coding RNA.

Wilm A, Higgins DG, Notredame C.

Nucleic Acids Res. 2008 May;36(9):e52. doi: 10.1093/nar/gkn174. Epub 2008 Apr 17.

32.

Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.

Bioinformatics. 2007 Nov 1;23(21):2947-8. Epub 2007 Sep 10.

PMID:
17846036
33.

An enhanced RNA alignment benchmark for sequence alignment programs.

Wilm A, Mainz I, Steger G.

Algorithms Mol Biol. 2006 Oct 24;1:19.

34.

STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.

Dalli D, Wilm A, Mainz I, Steger G.

Bioinformatics. 2006 Jul 1;22(13):1593-9. Epub 2006 Apr 13.

PMID:
16613908
35.

A benchmark of multiple sequence alignment programs upon structural RNAs.

Gardner PP, Wilm A, Washietl S.

Nucleic Acids Res. 2005 Apr 28;33(8):2433-9. Print 2005.

36.

Health circles for teleworkers: selective results on stress, strain and coping styles.

Konradt U, Schmook R, Wilm A, Hertel G.

Health Educ Res. 2000 Jun;15(3):327-38.

PMID:
10977380
37.

[Use of blood transfusion in the late treatment of Ancistrodon envenomization].

WILM A, LABEGORRE J, UNG-POLENG, CHUOP-PEOU.

Presse Med. 1962 Jun 9;70:1396-7. French. No abstract available.

PMID:
14007295

Supplemental Content

Support Center