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Items: 1 to 50 of 198

1.

Near full-length genomic sequencing and molecular analysis of HIV-infected individuals in a network-based intervention (TRIP) in Athens, Greece: Evidence that transmissions occur more frequently from those with high HIV-RNA.

Kostaki EG, Frampton D, Paraskevis D, Pantavou K, Ferns B, Raffle J, Grant P, Kozlakidis Z, Hadjikou A, Pavlitina E, Williams LD, Hatzakis A, Friedman SR, Nastouli E, Nikolopoulos GK.

Curr HIV Res. 2019 Jan 30. doi: 10.2174/1570162X17666190130120757. [Epub ahead of print]

PMID:
30706819
2.

Experiences of Stigma and Support Reported by Participants in a Network Intervention to Reduce HIV Transmission in Athens, Greece; Odessa, Ukraine; and Chicago, Illinois.

Williams LD, Korobchuk A, Pavlitina E, Nikolopoulos GK, Skaathun B, Schneider J, Kostaki EG, Smyrnov P, Vasylyeva TI, Psichogiou M, Paraskevis D, Morgan E, Hadjikou A, Downing MJ Jr, Hatzakis A, Friedman SR.

AIDS Behav. 2019 Jan 24. doi: 10.1007/s10461-019-02402-1. [Epub ahead of print]

PMID:
30680540
3.

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design.

Bricault CA, Yusim K, Seaman MS, Yoon H, Theiler J, Giorgi EE, Wagh K, Theiler M, Hraber P, Macke JP, Kreider EF, Learn GH, Hahn BH, Scheid JF, Kovacs JM, Shields JL, Lavine CL, Ghantous F, Rist M, Bayne MG, Neubauer GH, McMahan K, Peng H, Chéneau C, Jones JJ, Zeng J, Ochsenbauer C, Nkolola JP, Stephenson KE, Chen B, Gnanakaran S, Bonsignori M, Williams LD, Haynes BF, Doria-Rose N, Mascola JR, Montefiori DC, Barouch DH, Korber B.

Cell Host Microbe. 2019 Jan 9;25(1):59-72.e8. doi: 10.1016/j.chom.2018.12.001.

4.

Folding, Assembly, and Persistence: The Essential Nature and Origins of Biopolymers.

Runnels CM, Lanier KA, Williams JK, Bowman JC, Petrov AS, Hud NV, Williams LD.

J Mol Evol. 2018 Dec;86(9):598-610. doi: 10.1007/s00239-018-9876-2. Epub 2018 Nov 19.

5.

Multiple prebiotic metals mediate translation.

Bray MS, Lenz TK, Haynes JW, Bowman JC, Petrov AS, Reddi AR, Hud NV, Williams LD, Glass JB.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):12164-12169. doi: 10.1073/pnas.1803636115. Epub 2018 Nov 9.

6.

The Multilevel Relationships of HIV-Related Stigma to Child and Caregiver Mental Health among HIV-Affected Households in South Africa.

Williams LD, Aber JL; SIZE Research Group.

Am J Community Psychol. 2018 Oct 28. doi: 10.1002/ajcp.12280. [Epub ahead of print]

PMID:
30368830
7.

Circular Permutation Obscures Universality of a Ribosomal Protein.

Kovacs NA, Penev PI, Venapally A, Petrov AS, Williams LD.

J Mol Evol. 2018 Oct;86(8):581-592. doi: 10.1007/s00239-018-9869-1. Epub 2018 Oct 10.

PMID:
30306205
8.

Pockets of HIV Non-infection Within Highly-Infected Risk Networks in Athens, Greece.

Williams LD, Kostaki EG, Pavlitina E, Paraskevis D, Hatzakis A, Schneider J, Smyrnov P, Hadjikou A, Nikolopoulos GK, Psichogiou M, Friedman SR.

Front Microbiol. 2018 Aug 24;9:1825. doi: 10.3389/fmicb.2018.01825. eCollection 2018.

9.

An Innovative Study Design to Assess the Community Effect of Interventions to Mitigate HIV Epidemics Using Transmission-Chain Phylodynamics.

Magiorkinis G, Karamitros T, Vasylyeva TI, Williams LD, Mbisa JL, Hatzakis A, Paraskevis D, Friedman SR.

Am J Epidemiol. 2018 Dec 1;187(12):2615-2622. doi: 10.1093/aje/kwy160.

PMID:
30101288
10.

Change and variability in drug treatment coverage among people who inject drugs in 90 large metropolitan areas in the USA, 1993-2007.

Tempalski B, Cleland CM, Williams LD, Cooper HLF, Friedman SR.

Subst Abuse Treat Prev Policy. 2018 Aug 9;13(1):28. doi: 10.1186/s13011-018-0165-2.

11.

Identifying Which Place Characteristics are Associated with the Odds of Recent HIV Testing in a Large Sample of People Who Inject Drugs in 19 US Metropolitan Areas.

Tempalski B, Cooper HLF, Kelley ME, Linton SL, Wolfe ME, Chen YT, Ross Z, Des Jarlais DC, Friedman SR, Williams LD, Semaan S, DiNenno E, Wejnert C, Broz D, Paz-Bailey G; National HIV Behavioral Surveillance Study Group.

AIDS Behav. 2019 Feb;23(2):318-335. doi: 10.1007/s10461-018-2217-z.

PMID:
29971735
12.

Multi-laboratory validation of a Δ9-tetrahydrocannabinol LC-MS/MS test kit designed for quantifying THC and marijuana metabolites in blood.

Patton AL, Jones JO, Nord A, Eversole DW, Feazell EE, Mauldin K, Li L, Williams LD, Bai S, Channell K, Endres G, Gamette M, Moran JH.

Forensic Sci Criminol. 2018;3(1). doi: 10.15761/FSC.1000125. Epub 2018 Mar 28.

PMID:
29955732
13.

A Network Intervention to Locate Newly HIV Infected Persons Within MSM Networks in Chicago.

Morgan E, Skaathun B, Nikolopoulos GK, Paraskevis D, Williams LD, Smyrnov P, Friedman SR, Schneider JA.

AIDS Behav. 2019 Jan;23(1):15-20. doi: 10.1007/s10461-018-2202-6.

PMID:
29951972
14.

Translation: The Universal Structural Core of Life.

Bernier CR, Petrov AS, Kovacs NA, Penev PI, Williams LD.

Mol Biol Evol. 2018 Aug 1;35(8):2065-2076. doi: 10.1093/molbev/msy101.

15.

The South Asian Origins of the Global Network to Eradicate Blindness: WHO, NGOs, and Decentralization.

Williams LDA.

Endeavour. 2018 Mar;42(1):27-41. doi: 10.1016/j.endeavour.2018.03.001. Epub 2018 Mar 23.

PMID:
29580798
16.

Amount of naloxone used to reverse opioid overdoses outside of medical practice in a city with increasing illicitly manufactured fentanyl in illicit drug supply.

Bell A, Bennett AS, Jones TS, Doe-Simkins M, Williams LD.

Subst Abus. 2018 Mar 20:1-4. doi: 10.1080/08897077.2018.1449053. [Epub ahead of print]

PMID:
29558283
17.

Risk network approaches to locating undiagnosed HIV cases in Odessa, Ukraine.

Smyrnov P, Williams LD, Korobchuk A, Sazonova Y, Nikolopoulos GK, Skaathun B, Morgan E, Schneider J, Vasylyeva TI, Friedman SR.

J Int AIDS Soc. 2018 Jan;21(1). doi: 10.1002/jia2.25040.

18.

Knowledge, Normative Beliefs and Attitudes Related to Recent HIV Infection among People who Inject Drugs in Athens, Greece.

Giannou F, Nikolopoulos GK, Pantavou K, Benetou V, Kantzanou M, Sypsa V, Williams LD, Friedman SR, Hatzakis A.

Curr HIV Res. 2017;15(6):386-395. doi: 10.2174/1570162X15666171122165636.

PMID:
29173178
19.

Eukaryotic Ribosomal Expansion Segments as Antimicrobial Targets.

Gómez Ramos LM, Degtyareva NN, Kovacs NA, Holguin SY, Jiang L, Petrov AS, Biesiada M, Hu MY, Purzycka KJ, Arya DP, Williams LD.

Biochemistry. 2017 Oct 10;56(40):5288-5299. doi: 10.1021/acs.biochem.7b00703. Epub 2017 Sep 26.

PMID:
28895721
20.

The Central Symbiosis of Molecular Biology: Molecules in Mutualism.

Lanier KA, Petrov AS, Williams LD.

J Mol Evol. 2017 Aug;85(1-2):8-13. doi: 10.1007/s00239-017-9804-x. Epub 2017 Aug 7. Review.

21.

Potent and broad HIV-neutralizing antibodies in memory B cells and plasma.

Williams LD, Ofek G, Schätzle S, McDaniel JR, Lu X, Nicely NI, Wu L, Lougheed CS, Bradley T, Louder MK, McKee K, Bailer RT, O'Dell S, Georgiev IS, Seaman MS, Parks RJ, Marshall DJ, Anasti K, Yang G, Nie X, Tumba NL, Wiehe K, Wagh K, Korber B, Kepler TB, Munir Alam S, Morris L, Kamanga G, Cohen MS, Bonsignori M, Xia SM, Montefiori DC, Kelsoe G, Gao F, Mascola JR, Moody MA, Saunders KO, Liao HX, Tomaras GD, Georgiou G, Haynes BF.

Sci Immunol. 2017 Jan 27;2(7). pii: eaal2200. doi: 10.1126/sciimmunol.aal2200.

22.

A Doppler Echocardiographic Study of the Myocardial Inotropic Response to Peak Semisupine Exercise in Healthy Children: Development of a Simplified Index of Myocardial Reserve.

Cote AT, Duff DK, Escudero CA, De Souza AM, Williams LD, Gill R, Zadorsky MT, Harris KC, Potts JE, Sandor GGS.

J Am Soc Echocardiogr. 2017 Aug;30(8):790-796. doi: 10.1016/j.echo.2017.04.008. Epub 2017 Jun 7.

PMID:
28599828
23.

Ancestral Interactions of Ribosomal RNA and Ribosomal Proteins.

Lanier KA, Roy P, Schneider DM, Williams LD.

Biophys J. 2017 Jul 25;113(2):268-276. doi: 10.1016/j.bpj.2017.04.007. Epub 2017 May 12.

24.

Iron mediates catalysis of nucleic acid processing enzymes: support for Fe(II) as a cofactor before the great oxidation event.

Okafor CD, Lanier KA, Petrov AS, Athavale SS, Bowman JC, Hud NV, Williams LD.

Nucleic Acids Res. 2017 Apr 20;45(7):3634-3642. doi: 10.1093/nar/gkx171.

25.

Conservation of estrogen receptor function in invertebrate reproduction.

Jones BL, Walker C, Azizi B, Tolbert L, Williams LD, Snell TW.

BMC Evol Biol. 2017 Mar 4;17(1):65. doi: 10.1186/s12862-017-0909-z.

26.

The Origin of Life: Models and Data.

Lanier KA, Williams LD.

J Mol Evol. 2017 Mar;84(2-3):85-92. doi: 10.1007/s00239-017-9783-y. Epub 2017 Feb 27.

27.

Frozen in Time: The History of Proteins.

Kovacs NA, Petrov AS, Lanier KA, Williams LD.

Mol Biol Evol. 2017 May 1;34(5):1252-1260. doi: 10.1093/molbev/msx086.

28.

A network intervention that locates and intervenes with recently HIV-infected persons: The Transmission Reduction Intervention Project (TRIP).

Nikolopoulos GK, Pavlitina E, Muth SQ, Schneider J, Psichogiou M, Williams LD, Paraskevis D, Sypsa V, Magiorkinis G, Smyrnov P, Korobchuk A, Vasylyeva TI, Skaathun B, Malliori M, Kafetzopoulos E, Hatzakis A, Friedman SR.

Sci Rep. 2016 Dec 5;6:38100. doi: 10.1038/srep38100.

29.

Functional RNAs: combined assembly and packaging in VLPs.

Fang PY, Gómez Ramos LM, Holguin SY, Hsiao C, Bowman JC, Yang HW, Williams LD.

Nucleic Acids Res. 2017 Apr 7;45(6):3519-3527. doi: 10.1093/nar/gkw1154.

30.

Proteopedia entry: G-protein coupled receptors.

Jeremy Johnson R, Applegarth J, Bennett S, Caskey S, Coatney C, Corsbie K, Cotter A, Cotter D, Coulis A, Hansen H, Hart W, Koehler C, Koelper A, Kuhlman S, Mitchell C, Moskal B, Murfield O, Paton A, Schemenauer D, Stankavich B, Taylor C, Waibel B, Williams LD.

Biochem Mol Biol Educ. 2017 May;45(3):277-278. doi: 10.1002/bmb.21026. Epub 2016 Sep 28. No abstract available.

PMID:
27677420
31.

Antibody-Mediated Internalization of Infectious HIV-1 Virions Differs among Antibody Isotypes and Subclasses.

Tay MZ, Liu P, Williams LD, McRaven MD, Sawant S, Gurley TC, Xu TT, Dennison SM, Liao HX, Chenine AL, Alam SM, Moody MA, Hope TJ, Haynes BF, Tomaras GD.

PLoS Pathog. 2016 Aug 31;12(8):e1005817. doi: 10.1371/journal.ppat.1005817. eCollection 2016 Aug.

32.

Yeast rRNA Expansion Segments: Folding and Function.

Gómez Ramos LM, Smeekens JM, Kovacs NA, Bowman JC, Wartell RM, Wu R, Williams LD.

J Mol Biol. 2016 Oct 9;428(20):4048-4059. doi: 10.1016/j.jmb.2016.08.008. Epub 2016 Aug 10.

PMID:
27521697
33.

Imprint of Ancient Evolution on rRNA Folding.

Lanier KA, Athavale SS, Petrov AS, Wartell R, Williams LD.

Biochemistry. 2016 Aug 23;55(33):4603-13. doi: 10.1021/acs.biochem.6b00168. Epub 2016 Aug 10.

PMID:
27428664
34.

Income inequality, drug-related arrests, and the health of people who inject drugs: Reflections on seventeen years of research.

Friedman SR, Tempalski B, Brady JE, West BS, Pouget ER, Williams LD, Des Jarlais DC, Cooper HL.

Int J Drug Policy. 2016 Jun;32:11-6. doi: 10.1016/j.drugpo.2016.03.003. Epub 2016 Mar 11.

35.

Ribosomal small subunit domains radiate from a central core.

Gulen B, Petrov AS, Okafor CD, Vander Wood D, O'Neill EB, Hud NV, Williams LD.

Sci Rep. 2016 Feb 15;6:20885. doi: 10.1038/srep20885.

36.

History of the ribosome and the origin of translation.

Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD.

Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):15396-401. doi: 10.1073/pnas.1509761112. Epub 2015 Nov 30.

37.

Carbon storage potential by four macrophytes as affected by planting diversity in a created wetland.

Means MM, Ahn C, Korol AR, Williams LD.

J Environ Manage. 2016 Jan 1;165:133-139. doi: 10.1016/j.jenvman.2015.09.016. Epub 2015 Sep 29.

PMID:
26431640
38.

Testing for Plausibly Causal Links Between Parental Bereavement and Child Socio-Emotional and Academic Outcomes: A Propensity-Score Matching Model.

Williams LD, Aber JL.

J Abnorm Child Psychol. 2016 May;44(4):705-18. doi: 10.1007/s10802-015-0069-9.

PMID:
26340883
39.

The ancient heart of the ribosomal large subunit: a response to Caetano-Anolles.

Petrov AS, Williams LD.

J Mol Evol. 2015 Apr;80(3-4):166-70. doi: 10.1007/s00239-015-9678-8. Epub 2015 Apr 16.

PMID:
25877522
40.

The ribosome challenge to the RNA world.

Bowman JC, Hud NV, Williams LD.

J Mol Evol. 2015 Apr;80(3-4):143-61. doi: 10.1007/s00239-015-9669-9. Epub 2015 Mar 5. Review.

PMID:
25739364
41.

A randomized, double blind pilot study to assess the effects of losartan vs. atenolol on the biophysical properties of the aorta in patients with Marfan and Loeys-Dietz syndromes.

Sandor GG, Alghamdi MH, Raffin LA, Potts MT, Williams LD, Potts JE, Kiess M, van Breemen C.

Int J Cardiol. 2015 Jan 20;179:470-5. doi: 10.1016/j.ijcard.2014.11.082. Epub 2014 Nov 8.

PMID:
25465809
42.

Specific minor groove solvation is a crucial determinant of DNA binding site recognition.

Harris LA, Williams LD, Koudelka GB.

Nucleic Acids Res. 2014 Dec 16;42(22):14053-9. doi: 10.1093/nar/gku1259. Epub 2014 Nov 27.

43.

RiboVision suite for visualization and analysis of ribosomes.

Bernier CR, Petrov AS, Waterbury CC, Jett J, Li F, Freil LE, Xiong X, Wang L, Migliozzi BL, Hershkovits E, Xue Y, Hsiao C, Bowman JC, Harvey SC, Grover MA, Wartell ZJ, Williams LD.

Faraday Discuss. 2014;169:195-207. doi: 10.1039/c3fd00126a. Epub 2014 May 28.

PMID:
25340471
44.

Evolution of the ribosome at atomic resolution.

Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10251-6. doi: 10.1073/pnas.1407205111. Epub 2014 Jun 30.

45.

Immune activation is associated with CD8 T cell interleukin-21 production in HIV-1-infected individuals.

Williams LD, Amatya N, Bansal A, Sabbaj S, Heath SL, Sereti I, Goepfert PA.

J Virol. 2014 Sep 1;88(17):10259-63. doi: 10.1128/JVI.00764-14. Epub 2014 Jun 18.

46.

Capacity for infectious HIV-1 virion capture differs by envelope antibody specificity.

Liu P, Williams LD, Shen X, Bonsignori M, Vandergrift NA, Overman RG, Moody MA, Liao HX, Stieh DJ, McCotter KL, French AL, Hope TJ, Shattock R, Haynes BF, Tomaras GD.

J Virol. 2014 May;88(9):5165-70. doi: 10.1128/JVI.03765-13. Epub 2014 Feb 19.

47.

Secondary structures of rRNAs from all three domains of life.

Petrov AS, Bernier CR, Gulen B, Waterbury CC, Hershkovits E, Hsiao C, Harvey SC, Hud NV, Fox GE, Wartell RM, Williams LD.

PLoS One. 2014 Feb 5;9(2):e88222. doi: 10.1371/journal.pone.0088222. eCollection 2014.

49.

Selectivity of binding of PEGs and PEG-like oligomers to anti-PEG antibodies induced by methoxyPEG-proteins.

Saifer MG, Williams LD, Sobczyk MA, Michaels SJ, Sherman MR.

Mol Immunol. 2014 Feb;57(2):236-46. doi: 10.1016/j.molimm.2013.07.014. Epub 2013 Nov 5.

50.

Stress granules form in Brachionus manjavacas (Rotifera) in response to a variety of stressors.

Jones BL, VanLoozen J, Kim MH, Miles SJ, Dunham CM, Williams LD, Snell TW.

Comp Biochem Physiol A Mol Integr Physiol. 2013 Oct;166(2):375-84. doi: 10.1016/j.cbpa.2013.07.009. Epub 2013 Jul 12.

PMID:
23856158

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