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Discovering Precise Temporal Patterns in Large-Scale Neural Recordings through Robust and Interpretable Time Warping.

Williams AH, Poole B, Maheswaranathan N, Dhawale AK, Fisher T, Wilson CD, Brann DH, Trautmann EM, Ryu S, Shusterman R, Rinberg D, Ölveczky BP, Shenoy KV, Ganguli S.

Neuron. 2020 Jan 22;105(2):246-259.e8. doi: 10.1016/j.neuron.2019.10.020. Epub 2019 Nov 27.


Soft dendritic microparticles with unusual adhesion and structuring properties.

Roh S, Williams AH, Bang RS, Stoyanov SD, Velev OD.

Nat Mater. 2019 Dec;18(12):1315-1320. doi: 10.1038/s41563-019-0508-z. Epub 2019 Oct 14.


Identification of a Polyketide Synthase Gene Responsible for Ascochitine Biosynthesis in Ascochyta fabae and Its Abrogation in Sister Taxa.

Kim W, Lichtenzveig J, Syme RA, Williams AH, Peever TL, Chen W.

mSphere. 2019 Sep 25;4(5). pii: e00622-19. doi: 10.1128/mSphere.00622-19.


The cryo-electron microscopy supramolecular structure of the bacterial stressosome unveils its mechanism of activation.

Williams AH, Redzej A, Rolhion N, Costa TRD, Rifflet A, Waksman G, Cossart P.

Nat Commun. 2019 Jul 8;10(1):3005. doi: 10.1038/s41467-019-10782-0.


Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.

Young KA, Palmer ND, Fingerlin TE, Langefeld CD, Norris JM, Wang N, Xiang AH, Guo X, Williams AH, Chen YI, Taylor KD, Rotter JI, Raffel LJ, Goodarzi MO, Watanabe RM, Wagenknecht LE.

Obesity (Silver Spring). 2019 Aug;27(8):1331-1337. doi: 10.1002/oby.22527. Epub 2019 Jun 20.


Structure guided design of an antibacterial peptide that targets UDP-N-acetylglucosamine acyltransferase.

Dangkulwanich M, Raetz CRH, Williams AH.

Sci Rep. 2019 Mar 8;9(1):3947. doi: 10.1038/s41598-019-40418-8.


Unsupervised discovery of temporal sequences in high-dimensional datasets, with applications to neuroscience.

Mackevicius EL, Bahle AH, Williams AH, Gu S, Denisenko NI, Goldman MS, Fee MS.

Elife. 2019 Feb 5;8. pii: e38471. doi: 10.7554/eLife.38471.


Author Correction: N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes.

Impens F, Rolhion N, Radoshevich L, Bécavin C, Duval M, Mellin J, García Del Portillo F, Pucciarelli MG, Williams AH, Cossart P.

Nat Microbiol. 2018 Aug;3(8):962. doi: 10.1038/s41564-018-0197-4.


A plausibly causal functional lupus-associated risk variant in the STAT1-STAT4 locus.

Patel ZH, Lu X, Miller D, Forney CR, Lee J, Lynch A, Schroeder C, Parks L, Magnusen AF, Chen X, Pujato M, Maddox A, Zoller EE, Namjou B, Brunner HI, Henrickson M, Huggins JL, Williams AH, Ziegler JT, Comeau ME, Marion MC, Glenn SB, Adler A, Shen N, Nath SK, Stevens AM, Freedman BI, Pons-Estel BA, Tsao BP, Jacob CO, Kamen DL, Brown EE, Gilkeson GS, Alarcón GS, Martin J, Reveille JD, Anaya JM, James JA, Sivils KL, Criswell LA, Vilá LM, Petri M, Scofield RH, Kimberly RP, Edberg JC, Ramsey-Goldman R, Bang SY, Lee HS, Bae SC, Boackle SA, Cunninghame Graham D, Vyse TJ, Merrill JT, Niewold TB, Ainsworth HC, Silverman ED, Weisman MH, Wallace DJ, Raj P, Guthridge JM, Gaffney PM, Kelly JA, Alarcón-Riquelme ME, Langefeld CD, Wakeland EK, Kaufman KM, Weirauch MT, Harley JB, Kottyan LC.

Hum Mol Genet. 2018 Jul 1;27(13):2392-2404. doi: 10.1093/hmg/ddy140.


Unsupervised Discovery of Demixed, Low-Dimensional Neural Dynamics across Multiple Timescales through Tensor Component Analysis.

Williams AH, Kim TH, Wang F, Vyas S, Ryu SI, Shenoy KV, Schnitzer M, Kolda TG, Ganguli S.

Neuron. 2018 Jun 27;98(6):1099-1115.e8. doi: 10.1016/j.neuron.2018.05.015. Epub 2018 Jun 7.


Accessories Make the Outfit: Accessory Chromosomes and Other Dispensable DNA Regions in Plant-Pathogenic Fungi.

Bertazzoni S, Williams AH, Jones DA, Syme RA, Tan KC, Hane JK.

Mol Plant Microbe Interact. 2018 Aug;31(8):779-788. doi: 10.1094/MPMI-06-17-0135-FI. Epub 2018 Jun 28. Review.


A step-by-step in crystallo guide to bond cleavage and 1,6-anhydro-sugar product synthesis by a peptidoglycan-degrading lytic transglycosylase.

Williams AH, Wheeler R, Rateau L, Malosse C, Chamot-Rooke J, Haouz A, Taha MK, Boneca IG.

J Biol Chem. 2018 Apr 20;293(16):6000-6010. doi: 10.1074/jbc.RA117.001095. Epub 2018 Feb 26.


Tetrahydrocannabinol (THC) impairs encoding but not retrieval of verbal information.

Ranganathan M, Radhakrishnan R, Addy PH, Schnakenberg-Martin AM, Williams AH, Carbuto M, Elander J, Pittman B, Andrew Sewell R, Skosnik PD, D'Souza DC.

Prog Neuropsychopharmacol Biol Psychiatry. 2017 Oct 3;79(Pt B):176-183. doi: 10.1016/j.pnpbp.2017.06.019. Epub 2017 Jun 20.


Bulgecin A: The Key to a Broad-Spectrum Inhibitor  That Targets Lytic Transglycosylases.

Williams AH, Wheeler R, Thiriau C, Haouz A, Taha MK, Boneca IG.

Antibiotics (Basel). 2017 Feb 22;6(1). pii: E8. doi: 10.3390/antibiotics6010008.


N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes.

Impens F, Rolhion N, Radoshevich L, Bécavin C, Duval M, Mellin J, García Del Portillo F, Pucciarelli MG, Williams AH, Cossart P.

Nat Microbiol. 2017 Feb 13;2:17005. doi: 10.1038/nmicrobiol.2017.5. Erratum in: Nat Microbiol. 2018 Aug;3(8):962.


Dendritic trafficking faces physiologically critical speed-precision tradeoffs.

Williams AH, O'Donnell C, Sejnowski TJ, O'Leary T.

Elife. 2016 Dec 30;5. pii: e20556. doi: 10.7554/eLife.20556.


Data Makes a Difference.

Williams AH.

JEMS. 2016 May;41(5):suppl 4-7. No abstract available.


Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

Williams AH, Sharma M, Thatcher LF, Azam S, Hane JK, Sperschneider J, Kidd BN, Anderson JP, Ghosh R, Garg G, Lichtenzveig J, Kistler HC, Shea T, Young S, Buck SA, Kamphuis LG, Saxena R, Pande S, Ma LJ, Varshney RK, Singh KB.

BMC Genomics. 2016 Mar 5;17:191. doi: 10.1186/s12864-016-2486-8.


Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics.

Syme RA, Tan KC, Hane JK, Dodhia K, Stoll T, Hastie M, Furuki E, Ellwood SR, Williams AH, Tan YF, Testa AC, Gorman JJ, Oliver RP.

PLoS One. 2016 Feb 3;11(2):e0147221. doi: 10.1371/journal.pone.0147221. eCollection 2016.


Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici.

McDonald MC, McGinness L, Hane JK, Williams AH, Milgate A, Solomon PS.

G3 (Bethesda). 2016 Apr 7;6(4):779-91. doi: 10.1534/g3.115.025197.


Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

Sperschneider J, Williams AH, Hane JK, Singh KB, Taylor JM.

Front Plant Sci. 2015 Dec 23;6:1168. doi: 10.3389/fpls.2015.01168. eCollection 2015.


Cell Types, Network Homeostasis, and Pathological Compensation from a Biologically Plausible Ion Channel Expression Model.

O'Leary T, Williams AH, Franci A, Marder E.

Neuron. 2015 Dec 16;88(6):1308. doi: 10.1016/j.neuron.2015.12.002. Epub 2015 Dec 17. No abstract available.


Distinct or shared actions of peptide family isoforms: II. Multiple pyrokinins exert similar effects in the lobster stomatogastric nervous system.

Dickinson PS, Kurland SC, Qu X, Parker BO, Sreekrishnan A, Kwiatkowski MA, Williams AH, Ysasi AB, Christie AE.

J Exp Biol. 2015 Sep;218(Pt 18):2905-17. doi: 10.1242/jeb.124818. Epub 2015 Jul 23.


Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici.

McDonald MC, Williams AH, Milgate A, Pattemore JA, Solomon PS, Hane JK.

Fungal Genet Biol. 2015 Jun;79:71-5. doi: 10.1016/j.fgb.2015.04.012.


Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Karr JR, Williams AH, Zucker JD, Raue A, Steiert B, Timmer J, Kreutz C; DREAM8 Parameter Estimation Challenge Consortium, Wilkinson S, Allgood BA, Bot BM, Hoff BR, Kellen MR, Covert MW, Stolovitzky GA, Meyer P.

PLoS Comput Biol. 2015 May 28;11(5):e1004096. doi: 10.1371/journal.pcbi.1004096. eCollection 2015 May.


Lupus Risk Variant Increases pSTAT1 Binding and Decreases ETS1 Expression.

Lu X, Zoller EE, Weirauch MT, Wu Z, Namjou B, Williams AH, Ziegler JT, Comeau ME, Marion MC, Glenn SB, Adler A, Shen N, Nath SK, Stevens AM, Freedman BI, Tsao BP, Jacob CO, Kamen DL, Brown EE, Gilkeson GS, Alarcón GS, Reveille JD, Anaya JM, James JA, Sivils KL, Criswell LA, Vilá LM, Alarcón-Riquelme ME, Petri M, Scofield RH, Kimberly RP, Ramsey-Goldman R, Joo YB, Choi J, Bae SC, Boackle SA, Graham DC, Vyse TJ, Guthridge JM, Gaffney PM, Langefeld CD, Kelly JA, Greis KD, Kaufman KM, Harley JB, Kottyan LC.

Am J Hum Genet. 2015 May 7;96(5):731-9. doi: 10.1016/j.ajhg.2015.03.002. Epub 2015 Apr 9.


Perioperative management for patients with hereditary angioedema.

Williams AH, Craig TJ.

Allergy Rhinol (Providence). 2015 Jan;6(1):50-5. doi: 10.2500/ar.2015.6.0112.


Lupus risk variants in the PXK locus alter B-cell receptor internalization.

Vaughn SE, Foley C, Lu X, Patel ZH, Zoller EE, Magnusen AF, Williams AH, Ziegler JT, Comeau ME, Marion MC, Glenn SB, Adler A, Shen N, Nath S, Stevens AM, Freedman BI, Tsao BP, Jacob CO, Kamen DL, Brown EE, Gilkeson GS, Alarcón GS, Reveille JD, Anaya JM, James JA, Moser KL, Criswell LA, Vilá LM, Alarcón-Riquelme ME, Petri M, Scofield RH, Kimberly RP, Ramsey-Goldman R, Binjoo Y, Choi J, Bae SC, Boackle SA, Vyse TJ, Guthridge JM, Namjou B, Gaffney PM, Langefeld CD, Kaufman KM, Kelly JA, Harley IT, Harley JB, Kottyan LC.

Front Genet. 2015 Jan 8;5:450. doi: 10.3389/fgene.2014.00450. eCollection 2014.


Styrofoam-and-Velcro: An Alternative to Ball-and-Stick Models.

Masonjones SR, Masonjones HD, Malone MC, Williams AH, Beemer MM, Waggett RJ.

J Microbiol Biol Educ. 2014 Dec 15;15(2):295-6. doi: 10.1128/jmbe.v15i2.651. eCollection 2014 Dec. No abstract available.


Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study.

Martins M, Williams AH, Comeau M, Marion M, Ziegler JT, Freedman BI, Merrill JT, Glenn SB, Kelly JA, Sivils KM, James JA, Guthridge JM, Alarcón-Riquelme ME, Bae SC, Kim JH, Kim D, Anaya JM, Boackle SA, Criswell LA, Kimberly RP, Alarcón GS, Brown EE, Vilá LM, Petri MA, Ramsey-Goldman R, Niewold TB, Tsao BP, Gilkeson GS, Kamen DL, Jacob CO, Stevens AM, Gaffney PM, Harley JB, Langefeld CD, Fesel C.

Genes Immun. 2015 Mar;16(2):142-50. doi: 10.1038/gene.2014.73. Epub 2015 Jan 8.


Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.

Palmer ND, Goodarzi MO, Langefeld CD, Wang N, Guo X, Taylor KD, Fingerlin TE, Norris JM, Buchanan TA, Xiang AH, Haritunians T, Ziegler JT, Williams AH, Stefanovski D, Cui J, Mackay AW, Henkin LF, Bergman RN, Gao X, Gauderman J, Varma R, Hanis CL, Cox NJ, Highland HM, Below JE, Williams AL, Burtt NP, Aguilar-Salinas CA, Huerta-Chagoya A, Gonzalez-Villalpando C, Orozco L, Haiman CA, Tsai MY, Johnson WC, Yao J, Rasmussen-Torvik L, Pankow J, Snively B, Jackson RD, Liu S, Nadler JL, Kandeel F, Chen YD, Bowden DW, Rich SS, Raffel LJ, Rotter JI, Watanabe RM, Wagenknecht LE.

Diabetes. 2015 May;64(5):1853-66. doi: 10.2337/db14-0732. Epub 2014 Dec 18.


Visualization of a substrate-induced productive conformation of the catalytic triad of the Neisseria meningitidis peptidoglycan O-acetylesterase reveals mechanistic conservation in SGNH esterase family members.

Williams AH, Veyrier FJ, Bonis M, Michaud Y, Raynal B, Taha MK, White SW, Haouz A, Boneca IG.

Acta Crystallogr D Biol Crystallogr. 2014 Oct;70(Pt 10):2631-9. doi: 10.1107/S1399004714016770. Epub 2014 Sep 27.


Preferential association of a functional variant in complement receptor 2 with antibodies to double-stranded DNA.

Zhao J, Giles BM, Taylor RL, Yette GA, Lough KM, Ng HL, Abraham LJ, Wu H, Kelly JA, Glenn SB, Adler AJ, Williams AH, Comeau ME, Ziegler JT, Marion M, Alarcón-Riquelme ME; BIOLUPUS and GENLES Networks, Alarcón GS, Anaya JM, Bae SC, Kim D, Lee HS, Criswell LA, Freedman BI, Gilkeson GS, Guthridge JM, Jacob CO, James JA, Kamen DL, Merrill JT, Sivils KM, Niewold TB, Petri MA, Ramsey-Goldman R, Reveille JD, Scofield RH, Stevens AM, Vilá LM, Vyse TJ, Kaufman KM, Harley JB, Langefeld CD, Gaffney PM, Brown EE, Edberg JC, Kimberly RP, Ulgiati D, Tsao BP, Boackle SA.

Ann Rheum Dis. 2016 Jan;75(1):242-52. doi: 10.1136/annrheumdis-2014-205584. Epub 2014 Sep 1.


The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species.

Pattemore JA, Hane JK, Williams AH, Wilson BA, Stodart BJ, Ash GJ.

BMC Genomics. 2014 Aug 7;15:660. doi: 10.1186/1471-2164-15-660.


Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.

Chung SA, Brown EE, Williams AH, Ramos PS, Berthier CC, Bhangale T, Alarcon-Riquelme ME, Behrens TW, Criswell LA, Graham DC, Demirci FY, Edberg JC, Gaffney PM, Harley JB, Jacob CO, Kamboh MI, Kelly JA, Manzi S, Moser-Sivils KL, Russell LP, Petri M, Tsao BP, Vyse TJ, Zidovetzki R, Kretzler M, Kimberly RP, Freedman BI, Graham RR, Langefeld CD; International Consortium for Systemic Lupus Erythematosus Genetics.

J Am Soc Nephrol. 2014 Dec;25(12):2859-70. doi: 10.1681/ASN.2013050446. Epub 2014 Jun 12.


Cell types, network homeostasis, and pathological compensation from a biologically plausible ion channel expression model.

O'Leary T, Williams AH, Franci A, Marder E.

Neuron. 2014 May 21;82(4):809-21. doi: 10.1016/j.neuron.2014.04.002. Erratum in: Neuron. 2015 Dec 16;88(6):1308. Erratum in: Neuron. 2015 Dec 16;88(6):1308.


Molecular twister: a game for exploring solution chemistry.

Masonjones SR, Masonjones HD, Malone MC, Williams AH, Beemer MM, Waggett RJ.

J Microbiol Biol Educ. 2014 May 1;15(1):43-4. doi: 10.1128/jmbe.v15i1.652. eCollection 2014 May. No abstract available.


Hook students with the super bowl and a protein modeling activity to teach genetic concepts.

Williams AH, Malone M, Masonjones HD, Waggett RJ.

J Microbiol Biol Educ. 2014 May 1;15(1):41-2. doi: 10.1128/jmbe.v15i1.650. eCollection 2014 May. No abstract available.


Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.

Hane JK, Anderson JP, Williams AH, Sperschneider J, Singh KB.

PLoS Genet. 2014 May 8;10(5):e1004281. doi: 10.1371/journal.pgen.1004281. eCollection 2014 May.


Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations.

Caplan JS, Williams AH, Marder E.

J Neurosci. 2014 Apr 2;34(14):4963-75. doi: 10.1523/JNEUROSCI.0280-14.2014.


End-stage renal disease in African Americans with lupus nephritis is associated with APOL1.

Freedman BI, Langefeld CD, Andringa KK, Croker JA, Williams AH, Garner NE, Birmingham DJ, Hebert LA, Hicks PJ, Segal MS, Edberg JC, Brown EE, Alarcón GS, Costenbader KH, Comeau ME, Criswell LA, Harley JB, James JA, Kamen DL, Lim SS, Merrill JT, Sivils KL, Niewold TB, Patel NM, Petri M, Ramsey-Goldman R, Reveille JD, Salmon JE, Tsao BP, Gibson KL, Byers JR, Vinnikova AK, Lea JP, Julian BA, Kimberly RP; Lupus Nephritis–End‐Stage Renal Disease Consortium.

Arthritis Rheumatol. 2014 Feb;66(2):390-6. doi: 10.1002/art.38220.


The dynamics of peptidoglycan structure and function: conference report on the 3rd Great Wall Symposium.

Williams AH, Boneca IG, Burrows LL, Bugg TD.

Res Microbiol. 2014 Jan;165(1):60-7. doi: 10.1016/j.resmic.2013.11.002. Epub 2013 Nov 15. No abstract available.


The neuromuscular transform of the lobster cardiac system explains the opposing effects of a neuromodulator on muscle output.

Williams AH, Calkins A, O'Leary T, Symonds R, Marder E, Dickinson PS.

J Neurosci. 2013 Oct 16;33(42):16565-75. doi: 10.1523/JNEUROSCI.2903-13.2013.


Correlations in ion channel expression emerge from homeostatic tuning rules.

O'Leary T, Williams AH, Caplan JS, Marder E.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):E2645-54. doi: 10.1073/pnas.1309966110. Epub 2013 Jun 24.


Variable association of reactive intermediate genes with systemic lupus erythematosus in populations with different African ancestry.

Ramos PS, Oates JC, Kamen DL, Williams AH, Gaffney PM, Kelly JA, Kaufman KM, Kimberly RP, Niewold TB, Jacob CO, Tsao BP, Alarcón GS, Brown EE, Edberg JC, Petri MA, Ramsey-Goldman R, Reveille JD, Vilá LM, James JA, Guthridge JM, Merrill JT, Boackle SA, Freedman BI, Scofield RH, Stevens AM, Vyse TJ, Criswell LA, Moser KL, Alarcón-Riquelme ME, Langefeld CD, Harley JB, Gilkeson GS.

J Rheumatol. 2013 Jun;40(6):842-9. doi: 10.3899/jrheum.120989. Epub 2013 May 1. Erratum in: J Rheumatol. 2013 Jul;40(7):1240.


Animal-to-animal variability in the phasing of the crustacean cardiac motor pattern: an experimental and computational analysis.

Williams AH, Kwiatkowski MA, Mortimer AL, Marder E, Zeeman ML, Dickinson PS.

J Neurophysiol. 2013 May;109(10):2451-65. doi: 10.1152/jn.01010.2012. Epub 2013 Feb 27. Erratum in: J Neurophysiol. 2013 Aug;110(4):1036.


De-O-acetylation of peptidoglycan regulates glycan chain extension and affects in vivo survival of Neisseria meningitidis.

Veyrier FJ, Williams AH, Mesnage S, Schmitt C, Taha MK, Boneca IG.

Mol Microbiol. 2013 Mar;87(5):1100-12. doi: 10.1111/mmi.12153. Epub 2013 Feb 3.


Control of mitochondrial metabolism and systemic energy homeostasis by microRNAs 378 and 378*.

Carrer M, Liu N, Grueter CE, Williams AH, Frisard MI, Hulver MW, Bassel-Duby R, Olson EN.

Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15330-5. Epub 2012 Sep 4.


Fine mapping of Xq28: both MECP2 and IRAK1 contribute to risk for systemic lupus erythematosus in multiple ancestral groups.

Kaufman KM, Zhao J, Kelly JA, Hughes T, Adler A, Sanchez E, Ojwang JO, Langefeld CD, Ziegler JT, Williams AH, Comeau ME, Marion MC, Glenn SB, Cantor RM, Grossman JM, Hahn BH, Song YW, Yu CY, James JA, Guthridge JM, Brown EE, Alarcón GS, Kimberly RP, Edberg JC, Ramsey-Goldman R, Petri MA, Reveille JD, Vilá LM, Anaya JM, Boackle SA, Stevens AM, Freedman BI, Criswell LA, Pons Estel BA; Argentine Collaborative Group, Lee JH, Lee JS, Chang DM, Scofield RH, Gilkeson GS, Merrill JT, Niewold TB, Vyse TJ, Bae SC, Alarcón-Riquelme ME; BIOLUPUS network, Jacob CO, Moser Sivils K, Gaffney PM, Harley JB, Sawalha AH, Tsao BP.

Ann Rheum Dis. 2013 Mar;72(3):437-44. doi: 10.1136/annrheumdis-2012-201851. Epub 2012 Aug 17.

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