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Epidemiological Study of Mycobacterium bovis Infection in Buffalo and Cattle in Amazonas, Brazil.

Carneiro PAM, Takatani H, Pasquatti TN, Silva CBDG, Norby B, Wilkins MJ, Zumárraga MJ, Araujo FR, Kaneene JB.

Front Vet Sci. 2019 Dec 10;6:434. doi: 10.3389/fvets.2019.00434. eCollection 2019.


Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface.

Nixon SL, Daly RA, Borton MA, Solden LM, Welch SA, Cole DR, Mouser PJ, Wilkins MJ, Wrighton KC.

mSphere. 2019 Dec 18;4(6). pii: e00613-19. doi: 10.1128/mSphere.00613-19.


Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wilkins MJ.

PLoS One. 2019 Sep 6;14(9):e0221694. doi: 10.1371/journal.pone.0221694. eCollection 2019.


Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site.

Heavner GLW, Mansfeldt CB, Wilkins MJ, Nicora CD, Debs GE, Edwards EA, Richardson RE.

Front Microbiol. 2019 Jun 27;10:1433. doi: 10.3389/fmicb.2019.01433. eCollection 2019.


In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing.

Evans MV, Getzinger G, Luek JL, Hanson AJ, McLaughlin MC, Blotevogel J, Welch SA, Nicora CD, Purvine SO, Xu C, Cole DR, Darrah TH, Hoyt DW, Metz TO, Lee Ferguson P, Lipton MS, Wilkins MJ, Mouser PJ.

ISME J. 2019 Nov;13(11):2690-2700. doi: 10.1038/s41396-019-0466-0. Epub 2019 Jun 26.


Wetland Sediments Host Diverse Microbial Taxa Capable of Cycling Alcohols.

Dalcin Martins P, Frank J, Mitchell H, Markillie LM, Wilkins MJ.

Appl Environ Microbiol. 2019 May 30;85(12). pii: e00189-19. doi: 10.1128/AEM.00189-19. Print 2019 Jun 15.


Deep-Subsurface Pressure Stimulates Metabolic Plasticity in Shale-Colonizing Halanaerobium spp.

Booker AE, Hoyt DW, Meulia T, Eder E, Nicora CD, Purvine SO, Daly RA, Moore JD, Wunch K, Pfiffner SM, Lipton MS, Mouser PJ, Wrighton KC, Wilkins MJ.

Appl Environ Microbiol. 2019 May 30;85(12). pii: e00018-19. doi: 10.1128/AEM.00018-19. Print 2019 Jun 15.


Demographic and urban environmental variables associated with dog bites in Detroit.

Reese LA, Vertalka JJ, Wilkins MJ, Pizarro JM.

J Am Vet Med Assoc. 2019 Apr 15;254(8):986-990. doi: 10.2460/javma.254.8.986.


Effects of Fe/S ratio on the kinetics and microbial ecology of an Fe(III)-dosed anaerobic wastewater treatment system.

Ahmed M, Lin O, Saup CM, Wilkins MJ, Lin LS.

J Hazard Mater. 2019 May 5;369:593-600. doi: 10.1016/j.jhazmat.2019.02.062. Epub 2019 Feb 19.


Prevalence of Bovine Leukemia Virus Antibodies in US Dairy Cattle.

LaDronka RM, Ainsworth S, Wilkins MJ, Norby B, Byrem TM, Bartlett PC.

Vet Med Int. 2018 Nov 11;2018:5831278. doi: 10.1155/2018/5831278. eCollection 2018.


Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing.

Daly RA, Roux S, Borton MA, Morgan DM, Johnston MD, Booker AE, Hoyt DW, Meulia T, Wolfe RA, Hanson AJ, Mouser PJ, Moore JD, Wunch K, Sullivan MB, Wrighton KC, Wilkins MJ.

Nat Microbiol. 2019 Feb;4(2):352-361. doi: 10.1038/s41564-018-0312-6. Epub 2018 Dec 3.


Members of Marinobacter and Arcobacter Influence System Biogeochemistry During Early Production of Hydraulically Fractured Natural Gas Wells in the Appalachian Basin.

Evans MV, Panescu J, Hanson AJ, Welch SA, Sheets JM, Nastasi N, Daly RA, Cole DR, Darrah TH, Wilkins MJ, Wrighton KC, Mouser PJ.

Front Microbiol. 2018 Nov 15;9:2646. doi: 10.3389/fmicb.2018.02646. eCollection 2018.


Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale.

Borton MA, Daly RA, O'Banion B, Hoyt DW, Marcus DN, Welch S, Hastings SS, Meulia T, Wolfe RA, Booker AE, Sharma S, Cole DR, Wunch K, Moore JD, Darrah TH, Wilkins MJ, Wrighton KC.

Environ Microbiol. 2018 Dec;20(12):4596-4611. doi: 10.1111/1462-2920.14467.


Characterizing the Deep Terrestrial Subsurface Microbiome.

Daly RA, Wrighton KC, Wilkins MJ.

Methods Mol Biol. 2018;1849:1-15. doi: 10.1007/978-1-4939-8728-3_1.


Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems.

Dalcin Martins P, Danczak RE, Roux S, Frank J, Borton MA, Wolfe RA, Burris MN, Wilkins MJ.

Microbiome. 2018 Aug 7;6(1):138. doi: 10.1186/s40168-018-0522-4.


Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wilkins MJ.

mSystems. 2018 Jul 3;3(4). pii: e00066-18. doi: 10.1128/mSystems.00066-18. eCollection 2018 Jul-Aug.


Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales.

Borton MA, Hoyt DW, Roux S, Daly RA, Welch SA, Nicora CD, Purvine S, Eder EK, Hanson AJ, Sheets JM, Morgan DM, Wolfe RA, Sharma S, Carr TR, Cole DR, Mouser PJ, Lipton MS, Wilkins MJ, Wrighton KC.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6585-E6594. doi: 10.1073/pnas.1800155115. Epub 2018 Jun 25.


Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Mar 7;9(1):1034. doi: 10.1038/s41467-018-03572-7.


Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Feb 8;9(1):585. doi: 10.1038/s41467-018-02922-9. Erratum in: Nat Commun. 2018 Mar 7;9(1):1034.


Coral physiology and microbiome dynamics under combined warming and ocean acidification.

Grottoli AG, Dalcin Martins P, Wilkins MJ, Johnston MD, Warner ME, Cai WJ, Melman TF, Hoadley KD, Pettay DT, Levas S, Schoepf V.

PLoS One. 2018 Jan 16;13(1):e0191156. doi: 10.1371/journal.pone.0191156. eCollection 2018.


Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wrighton KC, Wilkins MJ.

Microbiome. 2017 Sep 2;5(1):112. doi: 10.1186/s40168-017-0331-1.


Draft Genome Sequences of Multiple Frackibacter Strains Isolated from Hydraulically Fractured Shale Environments.

Booker AE, Johnston MD, Daly RA, Wrighton KC, Wilkins MJ.

Genome Announc. 2017 Aug 10;5(32). pii: e00608-17. doi: 10.1128/genomeA.00608-17.


Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales.

Booker AE, Borton MA, Daly RA, Welch SA, Nicora CD, Hoyt DW, Wilson T, Purvine SO, Wolfe RA, Sharma S, Mouser PJ, Cole DR, Lipton MS, Wrighton KC, Wilkins MJ.

mSphere. 2017 Jul 5;2(4). pii: e00257-17. doi: 10.1128/mSphereDirect.00257-17. eCollection 2017 Jul-Aug.


Anoxia stimulates microbially catalyzed metal release from Animas River sediments.

Saup CM, Williams KH, Rodríguez-Freire L, Cerrato JM, Johnston MD, Wilkins MJ.

Environ Sci Process Impacts. 2017 Apr 19;19(4):578-585. doi: 10.1039/c7em00036g.


Water Table Dynamics and Biogeochemical Cycling in a Shallow, Variably-Saturated Floodplain.

Yabusaki SB, Wilkins MJ, Fang Y, Williams KH, Arora B, Bargar J, Beller HR, Bouskill NJ, Brodie EL, Christensen JN, Conrad ME, Danczak RE, King E, Soltanian MR, Spycher NF, Steefel CI, Tokunaga TK, Versteeg R, Waichler SR, Wainwright HM.

Environ Sci Technol. 2017 Mar 21;51(6):3307-3317. doi: 10.1021/acs.est.6b04873. Epub 2017 Mar 7.


Abundant carbon substrates drive extremely high sulfate reduction rates and methane fluxes in Prairie Pothole Wetlands.

Dalcin Martins P, Hoyt DW, Bansal S, Mills CT, Tfaily M, Tangen BA, Finocchiaro RG, Johnston MD, McAdams BC, Solensky MJ, Smith GJ, Chin YP, Wilkins MJ.

Glob Chang Biol. 2017 Aug;23(8):3107-3120. doi: 10.1111/gcb.13633. Epub 2017 Feb 23.


RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria.

Wrighton KC, Castelle CJ, Varaljay VA, Satagopan S, Brown CT, Wilkins MJ, Thomas BC, Sharon I, Williams KH, Tabita FR, Banfield JF.

ISME J. 2016 Nov;10(11):2702-2714. doi: 10.1038/ismej.2016.53. Epub 2016 May 3.


Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF.

Nat Commun. 2016 Oct 24;7:13219. doi: 10.1038/ncomms13219.


Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales.

Daly RA, Borton MA, Wilkins MJ, Hoyt DW, Kountz DJ, Wolfe RA, Welch SA, Marcus DN, Trexler RV, MacRae JD, Krzycki JA, Cole DR, Mouser PJ, Wrighton KC.

Nat Microbiol. 2016 Sep 5;1:16146. doi: 10.1038/nmicrobiol.2016.146.


Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover.

Stegen JC, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Danczak RE, Fansler SJ, Kennedy DW, Resch CT, Tfaily M.

Nat Commun. 2016 Apr 7;7:11237. doi: 10.1038/ncomms11237.


Identification of Bacteria Synthesizing Ribosomal RNA in Response to Uranium Addition During Biostimulation at the Rifle, CO Integrated Field Research Site.

McGuinness LR, Wilkins MJ, Williams KH, Long PE, Kerkhof LJ.

PLoS One. 2015 Sep 18;10(9):e0137270. doi: 10.1371/journal.pone.0137270. eCollection 2015.


Unusual biology across a group comprising more than 15% of domain Bacteria.

Brown CT, Hug LA, Thomas BC, Sharon I, Castelle CJ, Singh A, Wilkins MJ, Wrighton KC, Williams KH, Banfield JF.

Nature. 2015 Jul 9;523(7559):208-11. doi: 10.1038/nature14486. Epub 2015 Jun 15.


Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages.

Hug LA, Thomas BC, Sharon I, Brown CT, Sharma R, Hettich RL, Wilkins MJ, Williams KH, Singh A, Banfield JF.

Environ Microbiol. 2016 Jan;18(1):159-73. doi: 10.1111/1462-2920.12930. Epub 2015 Jul 22.


Alexa fluor-labeled fluorescent cellulose nanocrystals for bioimaging solid cellulose in spatially structured microenvironments.

Grate JW, Mo KF, Shin Y, Vasdekis A, Warner MG, Kelly RT, Orr G, Hu D, Dehoff KJ, Brockman FJ, Wilkins MJ.

Bioconjug Chem. 2015 Mar 18;26(3):593-601. doi: 10.1021/acs.bioconjchem.5b00048. Epub 2015 Mar 2.


Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.

Castelle CJ, Wrighton KC, Thomas BC, Hug LA, Brown CT, Wilkins MJ, Frischkorn KR, Tringe SG, Singh A, Markillie LM, Taylor RC, Williams KH, Banfield JF.

Curr Biol. 2015 Mar 16;25(6):690-701. doi: 10.1016/j.cub.2015.01.014. Epub 2015 Feb 19.


Changes in protein expression across laboratory and field experiments in Geobacter bemidjiensis.

Merkley ED, Wrighton KC, Castelle CJ, Anderson BJ, Wilkins MJ, Shah V, Arbour T, Brown JN, Singer SW, Smith RD, Lipton MS.

J Proteome Res. 2015 Mar 6;14(3):1361-75. doi: 10.1021/pr500983v. Epub 2015 Feb 3.


CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough.

Wilkins MJ, Hoyt DW, Marshall MJ, Alderson PA, Plymale AE, Markillie LM, Tucker AE, Walter ED, Linggi BE, Dohnalkova AC, Taylor RC.

Front Microbiol. 2014 Sep 25;5:507. doi: 10.3389/fmicb.2014.00507. eCollection 2014.


Trends and future challenges in sampling the deep terrestrial biosphere.

Wilkins MJ, Daly RA, Mouser PJ, Trexler R, Sharma S, Cole DR, Wrighton KC, Biddle JF, Denis EH, Fredrickson JK, Kieft TL, Onstott TC, Peterson L, Pfiffner SM, Phelps TJ, Schrenk MO.

Front Microbiol. 2014 Sep 12;5:481. doi: 10.3389/fmicb.2014.00481. eCollection 2014.


Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.

Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.

ISME J. 2015 Feb;9(2):333-46. doi: 10.1038/ismej.2014.128. Epub 2014 Aug 1.


Solvent immersion imprint lithography.

Vasdekis AE, Wilkins MJ, Grate JW, Kelly RT, Konopka AE, Xantheas SS, Chang TM.

Lab Chip. 2014 Jun 21;14(12):2072-80. doi: 10.1039/c4lc00226a. Epub 2014 May 2.


Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.

Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF.

Environ Microbiol. 2015 Mar;17(3):622-36. doi: 10.1111/1462-2920.12467. Epub 2014 Apr 18.


Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.

Wrighton KC, Castelle CJ, Wilkins MJ, Hug LA, Sharon I, Thomas BC, Handley KM, Mullin SW, Nicora CD, Singh A, Lipton MS, Long PE, Williams KH, Banfield JF.

ISME J. 2014 Jul;8(7):1452-63. doi: 10.1038/ismej.2013.249. Epub 2014 Mar 13.


Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.

Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE.

Microbiology. 2014 Feb;160(2):362-372. doi: 10.1099/mic.0.073965-0.


Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.

Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE.

Microbiology. 2014 Feb;160(Pt 2):362-72. doi: 10.1099/mic.0.073965-0. Epub 2013 Dec 9.


Survival of HIV-positive individuals with hepatitis B and C infection in Michigan.

Butt ZA, Wilkins MJ, Hamilton E, Todem D, Gardiner JC, Saeed M.

Epidemiol Infect. 2014 Oct;142(10):2131-9. doi: 10.1017/S0950268813003038. Epub 2013 Nov 29.


Field evidence of selenium bioreduction in a uranium-contaminated aquifer.

Williams KH, Wilkins MJ, N'Guessan AL, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE.

Environ Microbiol Rep. 2013 Jun;5(3):444-52.


Hepatitis B and C co-infection in HIV/AIDS population in the state of Michigan.

Butt ZA, Wilkins MJ, Hamilton E, Todem D, Gardiner JC, Saeed M.

Epidemiol Infect. 2013 Dec;141(12):2604-11. doi: 10.1017/S0950268813000538. Epub 2013 Mar 12.


Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.

Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS.

PLoS One. 2013;8(3):e57819. doi: 10.1371/journal.pone.0057819. Epub 2013 Mar 5.


Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.

Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.

ISME J. 2013 Jul;7(7):1286-98. doi: 10.1038/ismej.2013.20. Epub 2013 Feb 28.


Suite of activity-based probes for cellulose-degrading enzymes.

Chauvigné-Hines LM, Anderson LN, Weaver HM, Brown JN, Koech PK, Nicora CD, Hofstad BA, Smith RD, Wilkins MJ, Callister SJ, Wright AT.

J Am Chem Soc. 2012 Dec 19;134(50):20521-32. doi: 10.1021/ja309790w. Epub 2012 Dec 6.

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