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Items: 1 to 50 of 803

1.

Fast Short Read De-novo Assembly Using Overlap-Layout-Consensus Approach.

Bayat A, Deshpande NP, Wilkins MR, Parameswaran S.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Oct 11. doi: 10.1109/TCBB.2018.2875479. [Epub ahead of print]

PMID:
30307874
2.

Characterizing the Deep Terrestrial Subsurface Microbiome.

Daly RA, Wrighton KC, Wilkins MJ.

Methods Mol Biol. 2018;1849:1-15. doi: 10.1007/978-1-4939-8728-3_1.

PMID:
30298244
3.

Molecular Phenotyping of Telomerized Human Bone Marrow Skeletal Stem Cells Reveals a Genetic Program of Enhanced Proliferation and Maintenance of Differentiation Responses.

Twine NA, Harkness L, Adjaye J, Aldahmash A, Wilkins MR, Kassem M.

JBMR Plus. 2018 May 24;2(5):257-267. doi: 10.1002/jbm4.10050. eCollection 2018 Sep.

4.

Knockout of the Hmt1p arginine methyltransferase in Saccharomyces cerevisiae leads to the dysregulation of phosphate-associated genes and processes.

Chia SZ, Lai YW, Yagoub D, Lev S, Hamey JJ, Pang CNI, Desmarini D, Chen Z, Djordjevic JT, Erce MA, Hart-Smith G, Wilkins MR.

Mol Cell Proteomics. 2018 Sep 11. pii: mcp.RA117.000214. doi: 10.1074/mcp.RA117.000214. [Epub ahead of print]

5.

Differential Ion Mobility-Mass Spectrometry for Detailed Analysis of the Proteome.

Winter DL, Wilkins MR, Donald WA.

Trends Biotechnol. 2018 Sep 4. pii: S0167-7799(18)30209-9. doi: 10.1016/j.tibtech.2018.07.018. [Epub ahead of print] Review.

PMID:
30193737
6.

MT-MAMS: Protein Methyltransferase Motif Analysis by Mass Spectrometry.

Hamey JJ, Separovich RJ, Wilkins MR.

J Proteome Res. 2018 Oct 5;17(10):3485-3491. doi: 10.1021/acs.jproteome.8b00396. Epub 2018 Sep 6.

PMID:
30156103
7.

Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains.

Varela C, Schmidt SA, Borneman AR, Pang CNI, Krömerx JO, Khan A, Song X, Hodson MP, Solomon M, Mayr CM, Hines W, Pretorius IS, Baker MS, Roessner U, Mercurio M, Henschke PA, Wilkins MR, Chambers PJ.

Metab Eng. 2018 Aug 20;49:178-191. doi: 10.1016/j.ymben.2018.08.006. [Epub ahead of print]

PMID:
30138679
8.

Draft genome assembly of the invasive cane toad, Rhinella marina.

Edwards RJ, Tuipulotu DE, Amos TG, O'Meally D, Richardson MF, Russell TL, Vallinoto M, Carneiro M, Ferrand N, Wilkins MR, Sequeira F, Rollins LA, Holmes EC, Shine R, White PA.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy095.

9.

Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems.

Dalcin Martins P, Danczak RE, Roux S, Frank J, Borton MA, Wolfe RA, Burris MN, Wilkins MJ.

Microbiome. 2018 Aug 7;6(1):138. doi: 10.1186/s40168-018-0522-4.

10.

Recent advances in pulmonary arterial hypertension.

Wilkins MR, Aman J, Harbaum L, Ulrich A, Wharton J, Rhodes CJ.

F1000Res. 2018 Jul 24;7. pii: F1000 Faculty Rev-1128. doi: 10.12688/f1000research.14984.1. eCollection 2018. Review.

11.

Characterization of the Interaction between Arginine Methyltransferase Hmt1 and Its Substrate Npl3: Use of Multiple Cross-Linkers, Mass Spectrometric Approaches, and Software Platforms.

Smith DL, Götze M, Bartolec TK, Hart-Smith G, Wilkins MR.

Anal Chem. 2018 Aug 7;90(15):9101-9108. doi: 10.1021/acs.analchem.8b01525. Epub 2018 Jul 25.

PMID:
30004689
12.

Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wilkins MJ.

mSystems. 2018 Jul 3;3(4). pii: e00066-18. doi: 10.1128/mSystems.00066-18. eCollection 2018 Jul-Aug.

13.

Adaptation and conservation insights from the koala genome.

Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, Alquezar-Planas DE, Attenbrow V, Bragg JG, Brandies PA, Chong AY, Deakin JE, Di Palma F, Duda Z, Eldridge MDB, Ewart KM, Hogg CJ, Frankham GJ, Georges A, Gillett AK, Govendir M, Greenwood AD, Hayakawa T, Helgen KM, Hobbs M, Holleley CE, Heider TN, Jones EA, King A, Madden D, Graves JAM, Morris KM, Neaves LE, Patel HR, Polkinghorne A, Renfree MB, Robin C, Salinas R, Tsangaras K, Waters PD, Waters SA, Wright B, Wilkins MR, Timms P, Belov K.

Nat Genet. 2018 Aug;50(8):1102-1111. doi: 10.1038/s41588-018-0153-5. Epub 2018 Jul 2.

PMID:
29967444
14.

Biological Roles of Protein-Coding Tandem Repeats in the Yeast Candida Albicans.

Wilkins M, Zhang N, Schmid J.

J Fungi (Basel). 2018 Jun 29;4(3). pii: E78. doi: 10.3390/jof4030078.

15.

Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales.

Borton MA, Hoyt DW, Roux S, Daly RA, Welch SA, Nicora CD, Purvine S, Eder EK, Hanson AJ, Sheets JM, Morgan DM, Wolfe RA, Sharma S, Carr TR, Cole DR, Mouser PJ, Lipton MS, Wilkins MJ, Wrighton KC.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6585-E6594. doi: 10.1073/pnas.1800155115. Epub 2018 Jun 25.

16.

Short-Term Hemodynamic Effects of Apelin in Patients With Pulmonary Arterial Hypertension.

Brash L, Barnes GD, Brewis MJ, Church AC, Gibbs SJ, Howard LSGE, Jayasekera G, Johnson MK, McGlinchey N, Onorato J, Simpson J, Stirrat C, Thomson S, Watson G, Wilkins MR, Xu C, Welsh DJ, Newby DE, Peacock AJ.

JACC Basic Transl Sci. 2018 Mar 28;3(2):176-186. doi: 10.1016/j.jacbts.2018.01.013. eCollection 2018 Apr.

17.

Fractal Analysis of Right Ventricular Trabeculae in Pulmonary Hypertension.

Dawes TJW, Cai J, Quinlan M, de Marvao A, Ostrowski PJ, Tokarczuk PF, Watson GMJ, Wharton J, Howard LSGE, Gibbs JSR, Cook SA, Wilkins MR, O'Regan DP.

Radiology. 2018 Aug;288(2):386-395. doi: 10.1148/radiol.2018172821. Epub 2018 Jun 5.

18.

New Therapeutic Approaches in Pulmonary Arterial Hypertension: The Pantheon Is Getting Crowded.

White RJ, Wilkins MR.

Circulation. 2018 May 29;137(22):2390-2392. doi: 10.1161/CIRCULATIONAHA.118.032700. No abstract available.

PMID:
29844072
19.

Transfusion Rates and the Utility of Type and Screen for Pelvic Organ Prolapse Surgery.

Brueseke TJ, Wilkins MF, Willis-Gray MG, Husk KE, Peedin AR, Geller EJ, Wu JM.

Female Pelvic Med Reconstr Surg. 2018 Apr 20. doi: 10.1097/SPV.0000000000000589. [Epub ahead of print]

PMID:
29683888
20.

Identification of rare sequence variation underlying heritable pulmonary arterial hypertension.

Gräf S, Haimel M, Bleda M, Hadinnapola C, Southgate L, Li W, Hodgson J, Liu B, Salmon RM, Southwood M, Machado RD, Martin JM, Treacy CM, Yates K, Daugherty LC, Shamardina O, Whitehorn D, Holden S, Aldred M, Bogaard HJ, Church C, Coghlan G, Condliffe R, Corris PA, Danesino C, Eyries M, Gall H, Ghio S, Ghofrani HA, Gibbs JSR, Girerd B, Houweling AC, Howard L, Humbert M, Kiely DG, Kovacs G, MacKenzie Ross RV, Moledina S, Montani D, Newnham M, Olschewski A, Olschewski H, Peacock AJ, Pepke-Zaba J, Prokopenko I, Rhodes CJ, Scelsi L, Seeger W, Soubrier F, Stein DF, Suntharalingam J, Swietlik EM, Toshner MR, van Heel DA, Vonk Noordegraaf A, Waisfisz Q, Wharton J, Wort SJ, Ouwehand WH, Soranzo N, Lawrie A, Upton PD, Wilkins MR, Trembath RC, Morrell NW.

Nat Commun. 2018 Apr 12;9(1):1416. doi: 10.1038/s41467-018-03672-4.

21.

Pulmonary vascular endothelium: the orchestra conductor in respiratory diseases: Highlights from basic research to therapy.

Huertas A, Guignabert C, Barberà JA, Bärtsch P, Bhattacharya J, Bhattacharya S, Bonsignore MR, Dewachter L, Dinh-Xuan AT, Dorfmüller P, Gladwin MT, Humbert M, Kotsimbos T, Vassilakopoulos T, Sanchez O, Savale L, Testa U, Wilkins MR.

Eur Respir J. 2018 Apr 4;51(4). pii: 1700745. doi: 10.1183/13993003.00745-2017. Print 2018 Apr. Review.

PMID:
29545281
22.

Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Mar 7;9(1):1034. doi: 10.1038/s41467-018-03572-7.

23.

STAT3 regulates cytotoxicity of human CD57+ CD4+ T cells in blood and lymphoid follicles.

Alshekaili J, Chand R, Lee CE, Corley S, Kwong K, Papa I, Fulcher DA, Randall KL, Leiding JW, Ma CS, Wilkins MR, Uzel G, Goodnow CC, Vinuesa CG, Tangye SG, Cook MC.

Sci Rep. 2018 Feb 23;8(1):3529. doi: 10.1038/s41598-018-21389-8.

24.

Dynamic changes in display architecture and function across environments revealed by a systems approach to animal communication.

Rosenthal MF, Wilkins MR, Shizuka D, Hebets EA.

Evolution. 2018 May;72(5):1134-1145. doi: 10.1111/evo.13448. Epub 2018 Mar 12.

PMID:
29461638
25.

An experimental study on the impact of clinical interruptions on simulated trainee performances of central venous catheterization.

Jones J, Wilkins M, Caird J, Kaba A, Cheng A, Ma IWY.

Adv Simul (Lond). 2017 Feb 14;2:5. doi: 10.1186/s41077-017-0038-1. eCollection 2017.

26.

Boston keratoprosthesis type 1: outcomes of the first 38 cases performed at Moorfields Eye Hospital.

Samarawickrama C, Strouthidis N, Wilkins MR.

Eye (Lond). 2018 Jun;32(6):1087-1092. doi: 10.1038/s41433-018-0016-4. Epub 2018 Feb 14.

PMID:
29440740
27.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Feb 8;9(1):585. doi: 10.1038/s41467-018-02922-9. Erratum in: Nat Commun. 2018 Mar 7;9(1):1034.

28.

Continuous aryl alcohol oxidase production under growth-limited conditions using a trickle bed reactor.

Pardo-Planas O, Atiyeh HK, Prade RA, Müller M, Wilkins MR.

Bioresour Technol. 2018 May;255:149-155. doi: 10.1016/j.biortech.2018.01.098. Epub 2018 Feb 4.

PMID:
29414160
29.

Methylation of Elongation Factor 1A: Where, Who, and Why?

Hamey JJ, Wilkins MR.

Trends Biochem Sci. 2018 Mar;43(3):211-223. doi: 10.1016/j.tibs.2018.01.004. Epub 2018 Feb 1. Review.

PMID:
29398204
30.

Investigating the Network Basis of Negative Genetic Interactions in Saccharomyces cerevisiae with Integrated Biological Networks and Triplet Motif Analysis.

Ignatius Pang CN, Goel A, Wilkins MR.

J Proteome Res. 2018 Mar 2;17(3):1014-1030. doi: 10.1021/acs.jproteome.7b00649. Epub 2018 Feb 8.

PMID:
29392949
31.

Coral physiology and microbiome dynamics under combined warming and ocean acidification.

Grottoli AG, Dalcin Martins P, Wilkins MJ, Johnston MD, Warner ME, Cai WJ, Melman TF, Hoadley KD, Pettay DT, Levas S, Schoepf V.

PLoS One. 2018 Jan 16;13(1):e0191156. doi: 10.1371/journal.pone.0191156. eCollection 2018.

32.

RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients.

You J, Corley SM, Wen L, Hodge C, Höllhumer R, Madigan MC, Wilkins MR, Sutton G.

Sci Rep. 2018 Jan 10;8(1):389. doi: 10.1038/s41598-017-18480-x.

33.

Characterization of Protein Methyltransferases Rkm1, Rkm4, Efm4, Efm7, Set5 and Hmt1 Reveals Extensive Post-Translational Modification.

Winter DL, Hart-Smith G, Wilkins MR.

J Mol Biol. 2018 Jan 5;430(1):102-118. doi: 10.1016/j.jmb.2017.11.009. Epub 2017 Nov 26.

PMID:
29183786
34.

Long-read genome sequence assembly provides insight into ongoing retroviral invasion of the koala germline.

Hobbs M, King A, Salinas R, Chen Z, Tsangaras K, Greenwood AD, Johnson RN, Belov K, Wilkins MR, Timms P.

Sci Rep. 2017 Nov 20;7(1):15838. doi: 10.1038/s41598-017-16171-1.

35.

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

Schneider MV, Griffin PC, Tyagi S, Flannery M, Dayalan S, Gladman S, Watson-Haigh N, Bayer PE, Charleston M, Cooke I, Cook R, Edwards RJ, Edwards D, Gorse D, McConville M, Powell D, Wilkins MR, Lonie A.

Brief Bioinform. 2017 Jun 30. doi: 10.1093/bib/bbx071. [Epub ahead of print]

PMID:
29106479
36.

Pyomelanin produced by Vibrio cholerae confers resistance to predation by Acanthamoeba castellanii.

Noorian P, Hu J, Chen Z, Kjelleberg S, Wilkins MR, Sun S, McDougald D.

FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix147.

37.

Mobile femtosecond laser platform for pediatric cataract surgery.

Fung SSM, Brookes J, Wilkins MR, Adams GGW.

Eur J Ophthalmol. 2018 Mar;28(2):246-250. doi: 10.5301/ejo.5001055. Epub 2017 Oct 26.

PMID:
29077177
38.

Inhibition of pyruvate dehydrogenase kinase improves pulmonary arterial hypertension in genetically susceptible patients.

Michelakis ED, Gurtu V, Webster L, Barnes G, Watson G, Howard L, Cupitt J, Paterson I, Thompson RB, Chow K, O'Regan DP, Zhao L, Wharton J, Kiely DG, Kinnaird A, Boukouris AE, White C, Nagendran J, Freed DH, Wort SJ, Gibbs JSR, Wilkins MR.

Sci Transl Med. 2017 Oct 25;9(413). pii: eaao4583. doi: 10.1126/scitranslmed.aao4583.

39.

MethylQuant: A Tool for Sensitive Validation of Enzyme-Mediated Protein Methylation Sites from Heavy-Methyl SILAC Data.

Tay AP, Geoghegan V, Yagoub D, Wilkins MR, Hart-Smith G.

J Proteome Res. 2018 Jan 5;17(1):359-373. doi: 10.1021/acs.jproteome.7b00601. Epub 2017 Nov 3.

PMID:
29057651
40.

Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition.

Hart-Smith G, Reis RS, Waterhouse PM, Wilkins MR.

Front Plant Sci. 2017 Sep 27;8:1669. doi: 10.3389/fpls.2017.01669. eCollection 2017.

41.

Phenotypic Characterization of EIF2AK4 Mutation Carriers in a Large Cohort of Patients Diagnosed Clinically With Pulmonary Arterial Hypertension.

Hadinnapola C, Bleda M, Haimel M, Screaton N, Swift A, Dorfmüller P, Preston SD, Southwood M, Hernandez-Sanchez J, Martin J, Treacy C, Yates K, Bogaard H, Church C, Coghlan G, Condliffe R, Corris PA, Gibbs S, Girerd B, Holden S, Humbert M, Kiely DG, Lawrie A, Machado R, MacKenzie Ross R, Moledina S, Montani D, Newnham M, Peacock A, Pepke-Zaba J, Rayner-Matthews P, Shamardina O, Soubrier F, Southgate L, Suntharalingam J, Toshner M, Trembath R, Vonk Noordegraaf A, Wilkins MR, Wort SJ, Wharton J; NIHR BioResource–Rare Diseases Consortium; UK National Cohort Study of Idiopathic and Heritable PAH, Gräf S, Morrell NW.

Circulation. 2017 Nov 21;136(21):2022-2033. doi: 10.1161/CIRCULATIONAHA.117.028351. Epub 2017 Sep 28.

42.

Paediatric advance care planning survey: a cross-sectional examination of congruence and discordance between adolescents with HIV/AIDS and their families.

Lyon ME, Dallas RH, Garvie PA, Wilkins ML, Garcia A, Cheng YI, Wang J; Adolescent Palliative Care Consortium.

BMJ Support Palliat Care. 2017 Sep 21. pii: bmjspcare-2016-001224. doi: 10.1136/bmjspcare-2016-001224. [Epub ahead of print]

PMID:
28935629
43.

Apoptosis Signal-Regulating Kinase 1 Inhibition in Pulmonary Hypertension. Too Much to ASK?

Wilkins MR.

Am J Respir Crit Care Med. 2018 Feb 1;197(3):286-288. doi: 10.1164/rccm.201709-1814ED. No abstract available.

44.

Impact of type I Boston keratoprosthesis implantation on vision-related quality of life.

Ang M, Man R, Fenwick E, Lamoureux E, Wilkins M.

Br J Ophthalmol. 2018 Jul;102(7):878-881. doi: 10.1136/bjophthalmol-2017-310745. Epub 2017 Sep 19.

PMID:
28928267
45.

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wrighton KC, Wilkins MJ.

Microbiome. 2017 Sep 2;5(1):112. doi: 10.1186/s40168-017-0331-1.

46.

Atrioventricular block masked by posteroseptal bypass tract located in coronary sinus aneurysm.

Nam MCY, Wilkins M, Harris A, Dayananda N.

J Electrocardiol. 2017 Nov - Dec;50(6):978-980. doi: 10.1016/j.jelectrocard.2017.07.002. Epub 2017 Jul 12.

PMID:
28821328
47.

Draft Genome Sequences of Multiple Frackibacter Strains Isolated from Hydraulically Fractured Shale Environments.

Booker AE, Johnston MD, Daly RA, Wrighton KC, Wilkins MJ.

Genome Announc. 2017 Aug 10;5(32). pii: e00608-17. doi: 10.1128/genomeA.00608-17.

48.

Procedure to decouple reflectance and down-shifting effects in luminescent down-shifting enhanced photovoltaics.

Gabr AM, Walker AW, Wilkins MM, Kleiman R, Hinzer K.

Opt Express. 2017 Jun 12;25(12):A530-A538. doi: 10.1364/OE.25.00A530.

PMID:
28788883
49.

Genomic variation across two barn swallow hybrid zones reveals traits associated with divergence in sympatry and allopatry.

Scordato ESC, Wilkins MR, Semenov G, Rubtsov AS, Kane NC, Safran RJ.

Mol Ecol. 2017 Oct;26(20):5676-5691. doi: 10.1111/mec.14276. Epub 2017 Sep 5.

PMID:
28777875
50.

Prevention of melanin formation during aryl alcohol oxidase production under growth-limited conditions using an Aspergillus nidulans cell factory.

Pardo-Planas O, Prade RA, Müller M, Atiyeh HK, Wilkins MR.

Bioresour Technol. 2017 Nov;243:874-882. doi: 10.1016/j.biortech.2017.06.183. Epub 2017 Jul 8.

PMID:
28738504

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