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Items: 5

1.

SeQuiLa-cov: A fast and scalable library for depth of coverage calculations.

Wiewiórka M, Szmurło A, Kuśmirek W, Gambin T.

Gigascience. 2019 Aug 1;8(8). pii: giz094. doi: 10.1093/gigascience/giz094.

2.

Comparison of kNN and k-means optimization methods of reference set selection for improved CNV callers performance.

Kuśmirek W, Szmurło A, Wiewiórka M, Nowak R, Gambin T.

BMC Bioinformatics. 2019 May 28;20(1):266. doi: 10.1186/s12859-019-2889-z.

3.

SeQuiLa: an elastic, fast and scalable SQL-oriented solution for processing and querying genomic intervals.

Wiewiórka M, Leśniewska A, Szmurło A, Stępień K, Borowiak M, Okoniewski M, Gambin T.

Bioinformatics. 2019 Jun 1;35(12):2156-2158. doi: 10.1093/bioinformatics/bty940.

PMID:
30428005
4.

Benchmarking distributed data warehouse solutions for storing genomic variant information.

Wiewiórka MS, Wysakowicz DP, Okoniewski MJ, Gambin T.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax049.

5.

SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision.

Wiewiórka MS, Messina A, Pacholewska A, Maffioletti S, Gawrysiak P, Okoniewski MJ.

Bioinformatics. 2014 Sep 15;30(18):2652-3. doi: 10.1093/bioinformatics/btu343. Epub 2014 May 19.

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