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Items: 50

1.

The laboratory domestication of zebrafish: from diverse populations to inbred substrains.

Suurväli J, Whiteley AR, Zheng Y, Gharbi K, Leptin M, Wiehe T.

Mol Biol Evol. 2019 Dec 6. pii: msz289. doi: 10.1093/molbev/msz289. [Epub ahead of print]

PMID:
31808937
2.

Signatures of the Evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes.

Schiffer PH, Danchin EGJ, Burnell AM, Creevey CJ, Wong S, Dix I, O'Mahony G, Culleton BA, Rancurel C, Stier G, Martínez-Salazar EA, Marconi A, Trivedi U, Kroiher M, Thorne MAS, Schierenberg E, Wiehe T, Blaxter M.

iScience. 2019 Nov 22;21:587-602. doi: 10.1016/j.isci.2019.10.039. Epub 2019 Oct 24.

3.

Adaptation in structured populations and fuzzy boundaries between hard and soft sweeps.

Zheng Y, Wiehe T.

PLoS Comput Biol. 2019 Nov 11;15(11):e1007426. doi: 10.1371/journal.pcbi.1007426. eCollection 2019 Nov.

4.

DNA sequence-dependent chromatin architecture and nuclear hubs formation.

Jabbari K, Chakraborty M, Wiehe T.

Sci Rep. 2019 Oct 10;9(1):14646. doi: 10.1038/s41598-019-51036-9.

5.

The Evolving Moran Genealogy.

Wirtz J, Wiehe T.

Theor Popul Biol. 2019 Dec;130:94-105. doi: 10.1016/j.tpb.2019.07.005. Epub 2019 Jul 19.

PMID:
31330138
6.

A common genomic code for chromatin architecture and recombination landscape.

Jabbari K, Wirtz J, Rauscher M, Wiehe T.

PLoS One. 2019 Mar 13;14(3):e0213278. doi: 10.1371/journal.pone.0213278. eCollection 2019.

7.

Topological linkage disequilibrium calculated from coalescent genealogies.

Wirtz J, Rauscher M, Wiehe T.

Theor Popul Biol. 2018 Dec;124:41-50. doi: 10.1016/j.tpb.2018.09.001. Epub 2018 Sep 19.

PMID:
30243857
8.

The neutral frequency spectrum of linked sites.

Ferretti L, Klassmann A, Raineri E, Ramos-Onsins SE, Wiehe T, Achaz G.

Theor Popul Biol. 2018 Sep;123:70-79. doi: 10.1016/j.tpb.2018.06.001. Epub 2018 Jun 28.

PMID:
29964061
9.

The Diverging Routes of BORIS and CTCF: An Interactomic and Phylogenomic Analysis.

Jabbari K, Heger P, Sharma R, Wiehe T.

Life (Basel). 2018 Jan 30;8(1). pii: E4. doi: 10.3390/life8010004.

10.

Detecting Recent Positive Selection with a Single Locus Test Bipartitioning the Coalescent Tree.

Yang Z, Li J, Wiehe T, Li H.

Genetics. 2018 Feb;208(2):791-805. doi: 10.1534/genetics.117.300401. Epub 2017 Dec 7.

11.

Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests.

Ferretti L, Ledda A, Wiehe T, Achaz G, Ramos-Onsins SE.

Genetics. 2017 Sep;207(1):229-240. doi: 10.1534/genetics.116.188763. Epub 2017 Jul 5.

12.

Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects : Insect insulator proteins.

Pauli T, Vedder L, Dowling D, Petersen M, Meusemann K, Donath A, Peters RS, Podsiadlowski L, Mayer C, Liu S, Zhou X, Heger P, Wiehe T, Hering L, Mayer G, Misof B, Niehuis O.

BMC Genomics. 2016 Nov 3;17(1):861.

13.

Ultra Large Gene Families: A Matter of Adaptation or Genomic Parasites?

Schiffer PH, Gravemeyer J, Rauscher M, Wiehe T.

Life (Basel). 2016 Aug 8;6(3). pii: E32. doi: 10.3390/life6030032.

14.

Structure and evolutionary history of a large family of NLR proteins in the zebrafish.

Howe K, Schiffer PH, Zielinski J, Wiehe T, Laird GK, Marioni JC, Soylemez O, Kondrashov F, Leptin M.

Open Biol. 2016 Apr;6(4):160009. doi: 10.1098/rsob.160009. Epub 2016 Apr 27.

15.

Demography-adjusted tests of neutrality based on genome-wide SNP data.

Rafajlović M, Klassmann A, Eriksson A, Wiehe T, Mehlig B.

Theor Popul Biol. 2014 Aug;95:1-12. doi: 10.1016/j.tpb.2014.05.002. Epub 2014 Jun 6.

PMID:
24911258
16.

New tools in the box: an evolutionary synopsis of chromatin insulators.

Heger P, Wiehe T.

Trends Genet. 2014 May;30(5):161-71. doi: 10.1016/j.tig.2014.03.004. Epub 2014 Apr 28. Review.

PMID:
24786278
17.

Successive gain of insulator proteins in arthropod evolution.

Heger P, George R, Wiehe T.

Evolution. 2013 Oct;67(10):2945-56. doi: 10.1111/evo.12155. Epub 2013 Jun 4.

18.

Yule-generated trees constrained by node imbalance.

Disanto F, Schlizio A, Wiehe T.

Math Biosci. 2013 Nov;246(1):139-47. doi: 10.1016/j.mbs.2013.08.008. Epub 2013 Aug 30.

PMID:
23994240
19.

Coalescent tree imbalance and a simple test for selective sweeps based on microsatellite variation.

Li H, Wiehe T.

PLoS Comput Biol. 2013;9(5):e1003060. doi: 10.1371/journal.pcbi.1003060. Epub 2013 May 16.

20.

The effect of single recombination events on coalescent tree height and shape.

Ferretti L, Disanto F, Wiehe T.

PLoS One. 2013 Apr 8;8(4):e60123. doi: 10.1371/journal.pone.0060123. Print 2013.

21.

Exact enumeration of cherries and pitchforks in ranked trees under the coalescent model.

Disanto F, Wiehe T.

Math Biosci. 2013 Apr;242(2):195-200. doi: 10.1016/j.mbs.2013.01.010. Epub 2013 Feb 6.

PMID:
23396093
22.

The chromatin insulator CTCF and the emergence of metazoan diversity.

Heger P, Marin B, Bartkuhn M, Schierenberg E, Wiehe T.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17507-12. doi: 10.1073/pnas.1111941109. Epub 2012 Oct 8.

23.

Successful target cell transduction of capsid-engineered rAAV vectors requires clathrin-dependent endocytosis.

Uhrig S, Coutelle O, Wiehe T, Perabo L, Hallek M, Büning H.

Gene Ther. 2012 Feb;19(2):210-8. doi: 10.1038/gt.2011.78. Epub 2011 Jun 9.

PMID:
21654820
24.

Estimating mutation distances from unaligned genomes.

Haubold B, Pfaffelhuber P, Domazet-Loso M, Wiehe T.

J Comput Biol. 2009 Oct;16(10):1487-500. doi: 10.1089/cmb.2009.0106.

PMID:
19803738
25.

Simulation of DNA sequence evolution under models of recent directional selection.

Kim Y, Wiehe T.

Brief Bioinform. 2009 Jan;10(1):84-96. doi: 10.1093/bib/bbn048. Epub 2008 Dec 24.

26.

Identification of selective sweeps in closely related populations of the house mouse based on microsatellite scans.

Teschke M, Mukabayire O, Wiehe T, Tautz D.

Genetics. 2008 Nov;180(3):1537-45. doi: 10.1534/genetics.108.090811. Epub 2008 Sep 14.

27.

Second-order moments of segregating sites under variable population size.

Zivković D, Wiehe T.

Genetics. 2008 Sep;180(1):341-57. doi: 10.1534/genetics.108.091231. Epub 2008 Aug 20.

28.

Self-alignments to detect mutually exclusive exon usage.

Stephan M, Möller F, Wiehe T, Kleffe J.

In Silico Biol. 2007;7(6):613-21.

PMID:
18467774
29.

Applying genetic programming to the prediction of alternative mRNA splice variants.

Vukusic I, Grellscheid SN, Wiehe T.

Genomics. 2007 Apr;89(4):471-9. Epub 2007 Feb 5.

30.

How repetitive are genomes?

Haubold B, Wiehe T.

BMC Bioinformatics. 2006 Dec 22;7:541.

31.

Identification of selective sweeps using a dynamically adjusted number of linked microsatellites.

Wiehe T, Nolte V, Zivkovic D, Schlötterer C.

Genetics. 2007 Jan;175(1):207-18. Epub 2006 Oct 22.

32.

Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.

Pierstorff N, Bergman CM, Wiehe T.

Bioinformatics. 2006 Dec 1;22(23):2858-64. Epub 2006 Oct 10.

PMID:
17032682
33.

Genome comparison without alignment using shortest unique substrings.

Haubold B, Pierstorff N, Möller F, Wiehe T.

BMC Bioinformatics. 2005 May 23;6:123.

34.

Comparative genomics: methods and applications.

Haubold B, Wiehe T.

Naturwissenschaften. 2004 Sep;91(9):405-21. Epub 2004 Jun 25. Review.

PMID:
15278216
35.

gff2aplot: Plotting sequence comparisons.

Abril JF, Guigó R, Wiehe T.

Bioinformatics. 2003 Dec 12;19(18):2477-9.

PMID:
14668236
36.

Comparative gene prediction in human and mouse.

Parra G, Agarwal P, Abril JF, Wiehe T, Fickett JW, Guigó R.

Genome Res. 2003 Jan;13(1):108-17.

37.

Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana.

Haubold B, Kroymann J, Ratzka A, Mitchell-Olds T, Wiehe T.

Genetics. 2002 Jul;161(3):1269-78.

38.

Calculating the SNP-effective sample size from an alignment.

Haubold B, Wiehe T.

Bioinformatics. 2002 Jan;18(1):36-8.

PMID:
11836209
39.

SGP-1: prediction and validation of homologous genes based on sequence alignments.

Wiehe T, Gebauer-Jung S, Mitchell-Olds T, Guigó R.

Genome Res. 2001 Sep;11(9):1574-83.

40.

Genome sequence comparisons: hurdles in the fast lane to functional genomics.

Wiehe T, Guigó R, Miller W.

Brief Bioinform. 2000 Nov;1(4):381-8.

PMID:
11465055
41.

Statistics of divergence times.

Haubold B, Wiehe T.

Mol Biol Evol. 2001 Jul;18(7):1157-60.

PMID:
11420356
42.

Post-processing long pairwise alignments.

Zhang Z, Berman P, Wiehe T, Miller W.

Bioinformatics. 1999 Dec;15(12):1012-9.

PMID:
10745991
43.

Distinguishing recombination and intragenic gene conversion by linkage disequilibrium patterns.

Wiehe T, Mountain J, Parham P, Slatkin M.

Genet Res. 2000 Feb;75(1):61-73.

PMID:
10740922
44.

Comparative sequence analysis of the MECP2-locus in human and mouse reveals new transcribed regions.

Reichwald K, Thiesen J, Wiehe T, Weitzel J, Poustka WA, Rosenthal A, Platzer M, Strätling WH, Kioschis P.

Mamm Genome. 2000 Mar;11(3):182-90.

PMID:
10723722
45.

Genomic organization of a 225-kb region in Xq28 containing the gene for X-linked myotubular myopathy (MTM1) and a related gene (MTMR1).

Kioschis P, Wiemann S, Heiss NS, Francis F, Götz C, Poustka A, Taudien S, Platzer M, Wiehe T, Beckmann G, Weber J, Nordsiek G, Rosenthal A.

Genomics. 1998 Dec 1;54(2):256-66.

PMID:
9828128
46.

Genetic hitch-hiking in a subdivided population.

Slatkin M, Wiehe T.

Genet Res. 1998 Apr;71(2):155-60.

PMID:
9717437
48.
49.

Error propagation in reproduction of diploid organisms. A case study on single peaked landscapes.

Wiehe T, Baake E, Schuster P.

J Theor Biol. 1995 Nov 7;177(1):1-15.

PMID:
8551747
50.

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