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Items: 1 to 50 of 138

1.

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei.

Chung The H, Boinett C, Pham Thanh D, Jenkins C, Weill FX, Howden BP, Valcanis M, De Lappe N, Cormican M, Wangchuk S, Bodhidatta L, Mason CJ, Nguyen TNT, Ha Thanh T, Voong VP, Duong VT, Nguyen PHL, Turner P, Wick R, Ceyssens PJ, Thwaites G, Holt KE, Thomson NR, Rabaa MA, Baker S.

Nat Commun. 2019 Oct 23;10(1):4828. doi: 10.1038/s41467-019-12823-0.

2.

Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece.

Hamidian M, Wick RR, Judd LM, Holt KE, Hall RM.

Microbiol Resour Announc. 2019 Oct 10;8(41). pii: e00971-19. doi: 10.1128/MRA.00971-19.

3.

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clones 1 and 2.

Hamidian M, Wick RR, Hartstein RM, Judd LM, Holt KE, Hall RM.

Microb Genom. 2019 Oct;5(10). doi: 10.1099/mgen.0.000298.

4.

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.

De Maio N, Shaw LP, Hubbard A, George S, Sanderson ND, Swann J, Wick R, AbuOun M, Stubberfield E, Hoosdally SJ, Crook DW, Peto TEA, Sheppard AE, Bailey MJ, Read DS, Anjum MF, Walker AS, Stoesser N, On Behalf Of The Rehab Consortium.

Microb Genom. 2019 Sep;5(9). doi: 10.1099/mgen.0.000294. Epub 2019 Aug 30.

5.

Performance of neural network basecalling tools for Oxford Nanopore sequencing.

Wick RR, Judd LM, Holt KE.

Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.

6.

Genome-resolved metagenomics of an autotrophic thiocyanate-remediating microbial bioreactor consortium.

Watts MP, Spurr LP, Lê Cao KA, Wick R, Banfield JF, Moreau JW.

Water Res. 2019 Jul 1;158:106-117. doi: 10.1016/j.watres.2019.02.058. Epub 2019 Mar 23.

PMID:
31022528
7.

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae.

Wyres KL, Wick RR, Judd LM, Froumine R, Tokolyi A, Gorrie CL, Lam MMC, Duchêne S, Jenney A, Holt KE.

PLoS Genet. 2019 Apr 15;15(4):e1008114. doi: 10.1371/journal.pgen.1008114. eCollection 2019 Apr.

8.

Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15.

Lam MMC, Wyres KL, Wick RR, Judd LM, Fostervold A, Holt KE, Löhr IH.

J Antimicrob Chemother. 2019 May 1;74(5):1218-1222. doi: 10.1093/jac/dkz028.

9.

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1.

Hamidian M, Hawkey J, Wick R, Holt KE, Hall RM.

Microb Genom. 2019 Jan;5(1). doi: 10.1099/mgen.0.000242. Epub 2019 Jan 16.

10.

Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258.

Cerdeira LT, Lam MMC, Wyres KL, Wick RR, Judd LM, Lopes R, Ribas RM, Morais MM, Holt KE, Lincopan N.

Antimicrob Agents Chemother. 2019 Feb 26;63(3). pii: e02140-18. doi: 10.1128/AAC.02140-18. Print 2019 Mar. No abstract available.

11.

Complete Genome Sequence of WM99c, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 2 (GC2) Strain Representing an Australian GC2 Lineage.

Nigro SJ, Wick R, Holt KE, Hall RM.

Microbiol Resour Announc. 2018 Dec 6;7(22). pii: e01199-18. doi: 10.1128/MRA.01199-18. eCollection 2018 Dec.

12.

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307.

Wyres KL, Hawkey J, Hetland MAK, Fostervold A, Wick RR, Judd LM, Hamidian M, Howden BP, Löhr IH, Holt KE.

J Antimicrob Chemother. 2019 Mar 1;74(3):577-581. doi: 10.1093/jac/dky492.

13.

[Daytime Sleepiness in Patients with Restless Legs Syndrome: A Risk Factor for Traffic Accidents?]

Hug M, Lakämper S, Keller K, Wick R.

Praxis (Bern 1994). 2018 Nov;107(24):1319-1323. doi: 10.1024/1661-8157/a003131. German.

PMID:
30482126
14.

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.

Wick RR, Judd LM, Holt KE.

PLoS Comput Biol. 2018 Nov 20;14(11):e1006583. doi: 10.1371/journal.pcbi.1006583. eCollection 2018 Nov.

15.

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae.

Lam MMC, Wyres KL, Judd LM, Wick RR, Jenney A, Brisse S, Holt KE.

Genome Med. 2018 Oct 29;10(1):77. doi: 10.1186/s13073-018-0587-5.

16.

Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination.

Lam MMC, Wyres KL, Duchêne S, Wick RR, Judd LM, Gan YH, Hoh CH, Archuleta S, Molton JS, Kalimuddin S, Koh TH, Passet V, Brisse S, Holt KE.

Nat Commun. 2018 Jul 13;9(1):2703. doi: 10.1038/s41467-018-05114-7.

17.

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations.

Lam MMC, Wick RR, Wyres KL, Gorrie CL, Judd LM, Jenney AWJ, Brisse S, Holt KE.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000196. Epub 2018 Jul 9.

18.

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

Cain AK, Boinett CJ, Barquist L, Dordel J, Fookes M, Mayho M, Ellington MJ, Goulding D, Pickard D, Wick RR, Holt KE, Parkhill J, Thomson NR.

Sci Rep. 2018 Jun 29;8(1):9868. doi: 10.1038/s41598-018-28199-y.

19.

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes.

Wick RR, Heinz E, Holt KE, Wyres KL.

J Clin Microbiol. 2018 May 25;56(6). pii: e00197-18. doi: 10.1128/JCM.00197-18. Print 2018 Jun.

20.

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection.

Hawkey J, Ascher DB, Judd LM, Wick RR, Kostoulias X, Cleland H, Spelman DW, Padiglione A, Peleg AY, Holt KE.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000165. Epub 2018 Mar 16.

21.

Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital.

Gorrie CL, Mirceta M, Wick RR, Judd LM, Wyres KL, Thomson NR, Strugnell RA, Pratt NF, Garlick JS, Watson KM, Hunter PC, McGloughlin SA, Spelman DW, Jenney AWJ, Holt KE.

Clin Infect Dis. 2018 Jul 2;67(2):161-170. doi: 10.1093/cid/ciy027.

22.

First report of Bursaphelenchus antoniae from Pinus strobus in the U.S.

Carta LK, Wick RL.

J Nematol. 2018;50(4):473-478. doi: 10.21307/jofnem-2018-052.

PMID:
31094149
23.

Completing bacterial genome assemblies with multiplex MinION sequencing.

Wick RR, Judd LM, Gorrie CL, Holt KE.

Microb Genom. 2017 Sep 14;3(10):e000132. doi: 10.1099/mgen.0.000132. eCollection 2017 Oct.

24.

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Wick RR, Judd LM, Gorrie CL, Holt KE.

PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.

25.

Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients.

Gorrie CL, Mirceta M, Wick RR, Edwards DJ, Thomson NR, Strugnell RA, Pratt NF, Garlick JS, Watson KM, Pilcher DV, McGloughlin SA, Spelman DW, Jenney AWJ, Holt KE.

Clin Infect Dis. 2017 Jul 15;65(2):208-215. doi: 10.1093/cid/cix270.

26.

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward.

Schultz MB, Pham Thanh D, Tran Do Hoan N, Wick RR, Ingle DJ, Hawkey J, Edwards DJ, Kenyon JJ, Phu Huong Lan N, Campbell JI, Thwaites G, Thi Khanh Nhu N, Hall RM, Fournier-Level A, Baker S, Holt KE.

Microb Genom. 2016 Mar 2;2(3):e000050. doi: 10.1099/mgen.0.000050. eCollection 2016 Mar.

27.

Identification of Klebsiella capsule synthesis loci from whole genome data.

Wyres KL, Wick RR, Gorrie C, Jenney A, Follador R, Thomson NR, Holt KE.

Microb Genom. 2016 Dec 12;2(12):e000102. doi: 10.1099/mgen.0.000102. eCollection 2016 Dec.

28.

ARIA 2016: Care pathways implementing emerging technologies for predictive medicine in rhinitis and asthma across the life cycle.

Bousquet J, Hellings PW, Agache I, Bedbrook A, Bachert C, Bergmann KC, Bewick M, Bindslev-Jensen C, Bosnic-Anticevitch S, Bucca C, Caimmi DP, Camargos PA, Canonica GW, Casale T, Chavannes NH, Cruz AA, De Carlo G, Dahl R, Demoly P, Devillier P, Fonseca J, Fokkens WJ, Guldemond NA, Haahtela T, Illario M, Just J, Keil T, Klimek L, Kuna P, Larenas-Linnemann D, Morais-Almeida M, Mullol J, Murray R, Naclerio R, O'Hehir RE, Papadopoulos NG, Pawankar R, Potter P, Ryan D, Samolinski B, Schunemann HJ, Sheikh A, Simons FE, Stellato C, Todo-Bom A, Tomazic PV, Valiulis A, Valovirta E, Ventura MT, Wickman M, Young I, Yorgancioglu A, Zuberbier T, Aberer W, Akdis CA, Akdis M, Annesi-Maesano I, Ankri J, Ansotegui IJ, Anto JM, Arnavielhe S, Asarnoj A, Arshad H, Avolio F, Baiardini I, Barbara C, Barbagallo M, Bateman ED, Beghé B, Bel EH, Bennoor KS, Benson M, Białoszewski AZ, Bieber T, Bjermer L, Blain H, Blasi F, Boner AL, Bonini M, Bonini S, Bosse I, Bouchard J, Boulet LP, Bourret R, Bousquet PJ, Braido F, Briggs AH, Brightling CE, Brozek J, Buhl R, Bunu C, Burte E, Bush A, Caballero-Fonseca F, Calderon MA, Camuzat T, Cardona V, Carreiro-Martins P, Carriazo AM, Carlsen KH, Carr W, Cepeda Sarabia AM, Cesari M, Chatzi L, Chiron R, Chivato T, Chkhartishvili E, Chuchalin AG, Chung KF, Ciprandi G, de Sousa JC, Cox L, Crooks G, Custovic A, Dahlen SE, Darsow U, Dedeu T, Deleanu D, Denburg JA, De Vries G, Didier A, Dinh-Xuan AT, Dokic D, Douagui H, Dray G, Dubakiene R, Durham SR, Du Toit G, Dykewicz MS, Eklund P, El-Gamal Y, Ellers E, Emuzyte R, Farrell J, Fink Wagner A, Fiocchi A, Fletcher M, Forastiere F, Gaga M, Gamkrelidze A, Gemicioğlu B, Gereda JE, van Wick RG, González Diaz S, Grisle I, Grouse L, Gutter Z, Guzmán MA, Hellquist-Dahl B, Heinrich J, Horak F, Hourihane JO, Humbert M, Hyland M, Iaccarino G, Jares EJ, Jeandel C, Johnston SL, Joos G, Jonquet O, Jung KS, Jutel M, Kaidashev I, Khaitov M, Kalayci O, Kalyoncu AF, Kardas P, Keith PK, Kerkhof M, Kerstjens HA, Khaltaev N, Kogevinas M, Kolek V, Koppelman GH, Kowalski ML, Kuitunen M, Kull I, Kvedariene V, Lambrecht B, Lau S, Laune D, Le LT, Lieberman P, Lipworth B, Li J, Lodrup Carlsen KC, Louis R, Lupinek C, MacNee W, Magar Y, Magnan A, Mahboub B, Maier D, Majer I, Malva J, Manning P, De Manuel Keenoy E, Marshall GD, Masjedi MR, Mathieu-Dupas E, Maurer M, Mavale-Manuel S, Melén E, Melo-Gomes E, Meltzer EO, Mercier J, Merk H, Miculinic N, Mihaltan F, Milenkovic B, Millot-Keurinck J, Mohammad Y, Momas I, Mösges R, Muraro A, Namazova-Baranova L, Nadif R, Neffen H, Nekam K, Nieto A, Niggemann B, Nogueira-Silva L, Nogues M, Nyembue TD, Ohta K, Okamoto Y, Okubo K, Olive-Elias M, Ouedraogo S, Paggiaro P, Pali-Schöll I, Palkonen S, Panzner P, Papi A, Park HS, Passalacqua G, Pedersen S, Pereira AM, Pfaar O, Picard R, Pigearias B, Pin I, Plavec D, Pohl W, Popov TA, Portejoie F, Postma D, Poulsen LK, Price D, Rabe KF, Raciborski F, Roberts G, Robalo-Cordeiro C, Rodenas F, Rodriguez-Mañas L, Rolland C, Roman Rodriguez M, Romano A, Rosado-Pinto J, Rosario N, Rottem M, Sanchez-Borges M, Sastre-Dominguez J, Scadding GK, Scichilone N, Schmid-Grendelmeier P, Serrano E, Shields M, Siroux V, Sisul JC, Skrindo I, Smit HA, Solé D, Sooronbaev T, Spranger O, Stelmach R, Sterk PJ, Strandberg T, Sunyer J, Thijs C, Triggiani M, Valenta R, Valero A, van Eerd M, van Ganse E, van Hague M, Vandenplas O, Varona LL, Vellas B, Vezzani G, Vazankari T, Viegi G, Vontetsianos T, Wagenmann M, Walker S, Wang DY, Wahn U, Werfel T, Whalley B, Williams DM, Williams S, Wilson N, Wright J, Yawn BP, Yiallouros PK, Yusuf OM, Zaidi A, Zar HJ, Zernotti ME, Zhang L, Zhong N, Zidarn M.

Clin Transl Allergy. 2016 Dec 30;6:47. doi: 10.1186/s13601-016-0137-4. eCollection 2016. Review. Erratum in: Clin Transl Allergy. 2019 Oct 10;9:53.

29.

Microbial mercury methylation in Antarctic sea ice.

Gionfriddo CM, Tate MT, Wick RR, Schultz MB, Zemla A, Thelen MP, Schofield R, Krabbenhoft DP, Holt KE, Moreau JW.

Nat Microbiol. 2016 Aug 1;1(10):16127. doi: 10.1038/nmicrobiol.2016.127.

PMID:
27670112
30.

A De Novo-Assembly Based Data Analysis Pipeline for Plant Obligate Parasite Metatranscriptomic Studies.

Guo L, Allen KS, Deiulio G, Zhang Y, Madeiras AM, Wick RL, Ma LJ.

Front Plant Sci. 2016 Jul 11;7:925. doi: 10.3389/fpls.2016.00925. eCollection 2016.

31.

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate.

Pham Thanh D, Thanh Tuyen H, Nguyen Thi Nguyen T, Chung The H, Wick RR, Thwaites GE, Baker S, Holt KE.

J Antimicrob Chemother. 2016 Aug;71(8):2314-7. doi: 10.1093/jac/dkw173. Epub 2016 May 30.

32.

Phytophthora species recovered from the Connecticut River Valley in Massachusetts, USA.

Brazee NJ, Wick RL, Hulvey JP.

Mycologia. 2016 Jan-Feb;108(1):6-19. doi: 10.3852/15-038. Epub 2015 Nov 9.

PMID:
26553775
33.

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.

Hawkey J, Hamidian M, Wick RR, Edwards DJ, Billman-Jacobe H, Hall RM, Holt KE.

BMC Genomics. 2015 Sep 3;16:667. doi: 10.1186/s12864-015-1860-2.

34.

Bandage: interactive visualization of de novo genome assemblies.

Wick RR, Schultz MB, Zobel J, Holt KE.

Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.

35.

Basil Downy Mildew (Peronospora belbahrii): Discoveries and Challenges Relative to Its Control.

Wyenandt CA, Simon JE, Pyne RM, Homa K, McGrath MT, Zhang S, Raid RN, Ma LJ, Wick R, Guo L, Madeiras A.

Phytopathology. 2015 Jul;105(7):885-94. doi: 10.1094/PHYTO-02-15-0032-FI. Epub 2015 Jul 9. Review.

36.

First Report of Forsythia Shoot Blight Caused by Phytophthora nicotianae in Connecticut.

LaMondia JA, Li DW, Madeiras AM, Wick RL.

Plant Dis. 2014 Sep;98(9):1278. doi: 10.1094/PDIS-03-14-0297-PDN.

PMID:
30699619
37.

Effects of Hydrolyzable Tannins on In Vitro Growth of Armillaria calvescens and A. gallica.

Brazee NJ, Wick RL, Wargo PM.

Plant Dis. 2011 Oct;95(10):1255-1262. doi: 10.1094/PDIS-02-11-0116.

PMID:
30731693
38.

Genotypic diversity of Armillaria gallica from mixed oak forests in Massachusetts.

Brazee NJ, Marra RE, Wick RL.

Mycologia. 2012 Jan-Feb;104(1):53-61. doi: 10.3852/11-113. Epub 2011 Sep 13.

PMID:
21914822
39.

Evaluation of partial tef1, rpb2, and nLSU sequences for identification of isolates representing Armillaria calvescens and Armillaria gallica from northeastern North America.

Brazee NJ, Hulvey JP, Wick RL.

Fungal Biol. 2011 Aug;115(8):741-9. doi: 10.1016/j.funbio.2011.05.008. Epub 2011 May 30.

PMID:
21802054
40.

First Report of Black Leg of Hydroponic Basil in the United States Caused by Plectosporium tabacinum.

Egel D, Ruhl G, Hoke S, Dicklow MB, Wick R.

Plant Dis. 2010 Apr;94(4):484. doi: 10.1094/PDIS-94-4-0484B.

PMID:
30754510
41.

Evidence for phosphonate usage in the coral holobiont.

Thomas S, Burdett H, Temperton B, Wick R, Snelling D, McGrath JW, Quinn JP, Munn C, Gilbert JA.

ISME J. 2010 Mar;4(3):459-61. doi: 10.1038/ismej.2009.129. Epub 2009 Dec 3.

PMID:
19956272
42.

[Long-term investigation of the risk of malignant diseases following intravenous radium-224 treatment for ankylosing spondylitis].

Schulte TL, Nekolla EA, Wick RR.

Strahlenther Onkol. 2009 Sep;185(9):549-56. doi: 10.1007/s00066-009-2006-8. Epub 2009 Sep 12. German.

PMID:
19756420
43.

Incidence of leukaemia and other malignant diseases following injections of the short-lived alpha-emitter 224Ra into man.

Wick RR, Atkinson MJ, Nekolla EA.

Radiat Environ Biophys. 2009 Aug;48(3):287-94. doi: 10.1007/s00411-009-0227-y. Epub 2009 May 28.

PMID:
19475414
44.

First Report of Downy Mildew Caused by a Peronospora Species on Sweet Basil (Ocimum basilicum) in Massachusetts.

Wick RL, Brazee NJ.

Plant Dis. 2009 Mar;93(3):318. doi: 10.1094/PDIS-93-3-0318B.

PMID:
30764191
45.

Toxicity of nanoparticulate and bulk ZnO, Al2O3 and TiO2 to the nematode Caenorhabditis elegans.

Wang H, Wick RL, Xing B.

Environ Pollut. 2009 Apr;157(4):1171-7. doi: 10.1016/j.envpol.2008.11.004. Epub 2008 Dec 9.

PMID:
19081167
46.

Conditions and circumstances predisposing to death from positional asphyxia in adults.

Byard RW, Wick R, Gilbert JD.

J Forensic Leg Med. 2008 Oct;15(7):415-9. doi: 10.1016/j.jflm.2008.01.001. Epub 2008 Mar 10.

PMID:
18761306
47.

Increased risk of myeloid leukaemia in patients with ankylosing spondylitis following treatment with radium-224.

Wick RR, Nekolla EA, Gaubitz M, Schulte TL.

Rheumatology (Oxford). 2008 Jun;47(6):855-9. doi: 10.1093/rheumatology/ken060. Epub 2008 Apr 4.

PMID:
18390588
48.

Matricides in South Australia - a 20-year retrospective review.

Wick R, Mitchell E, Gilbert JD, Byard RW.

J Forensic Leg Med. 2008 Apr;15(3):168-71. doi: 10.1016/j.jflm.2008.01.002. Epub 2008 Feb 12.

PMID:
18313012
49.

Congenital mesenteric defects and unexpected death-a rare finding at autopsy.

Byard RW, Wick R.

Pediatr Dev Pathol. 2008 May-Jun;11(3):245-8. doi: 10.2350/07-12-0392.1. Epub 2008 Jan 18.

PMID:
18205527
50.

Histologic dating of bruises in moribund infants and young children.

Byard RW, Wick R, Gilbert JD, Donald T.

Forensic Sci Med Pathol. 2008;4(3):187-92. doi: 10.1007/s12024-008-9030-3. Epub 2008 Feb 15.

PMID:
19291460

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