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Items: 46

1.

Genome-Wide Identification of Myxobacterial Predation Genes and Demonstration of Formaldehyde Secretion as a Potentially Predation-Resistant Trait of Pseudomonas aeruginosa.

Sutton D, Livingstone PG, Furness E, Swain MT, Whitworth DE.

Front Microbiol. 2019 Nov 13;10:2650. doi: 10.3389/fmicb.2019.02650. eCollection 2019.

2.
3.

A Polyphasic Approach for Assessing Eco-System Connectivity Demonstrates that Perturbation Remodels Network Architecture in Soil Microcosms.

Stamou GP, Monokrousos N, Gwynn-Jones D, Whitworth DE, Papatheodorou EM.

Microb Ecol. 2019 Nov;78(4):949-960. doi: 10.1007/s00248-019-01367-x. Epub 2019 Apr 5.

PMID:
30953090
4.

Is "Wolf-Pack" Predation by Antimicrobial Bacteria Cooperative? Cell Behaviour and Predatory Mechanisms Indicate Profound Selfishness, Even when Working Alongside Kin.

Marshall RC, Whitworth DE.

Bioessays. 2019 Apr;41(4):e1800247. doi: 10.1002/bies.201800247. Epub 2019 Mar 27. Review.

PMID:
30919490
5.

Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1.

Sengupta K, Swain MT, Livingstone PG, Whitworth DE, Saha P.

Front Microbiol. 2019 Jan 4;9:3209. doi: 10.3389/fmicb.2018.03209. eCollection 2018.

6.

Genome Sequencing and Pan-Genome Analysis of 23 Corallococcus spp. Strains Reveal Unexpected Diversity, With Particular Plasticity of Predatory Gene Sets.

Livingstone PG, Morphew RM, Whitworth DE.

Front Microbiol. 2018 Dec 19;9:3187. doi: 10.3389/fmicb.2018.03187. eCollection 2018.

7.

Genome Analysis, Metabolic Potential, and Predatory Capabilities of Herpetosiphon llansteffanense sp. nov.

Livingstone PG, Morphew RM, Cookson AR, Whitworth DE.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01040-18. doi: 10.1128/AEM.01040-18. Print 2018 Nov 15.

8.

Interspecies conflict affects RNA expression.

Whitworth DE.

FEMS Microbiol Lett. 2018 May 1;365(10). doi: 10.1093/femsle/fny096.

PMID:
29648585
9.

Transcriptional changes when Myxococcus xanthus preys on Escherichia coli suggest myxobacterial predators are constitutively toxic but regulate their feeding.

Livingstone PG, Millard AD, Swain MT, Whitworth DE.

Microb Genom. 2018 Feb;4(2). doi: 10.1099/mgen.0.000152. Epub 2018 Jan 18.

10.

Group Therapy or Mass Suicide? The Sharing of Cellular Damage Between Members of a Bacterial Community.

Whitworth DE.

Bioessays. 2017 Dec;39(12). doi: 10.1002/bies.201700178. Epub 2017 Nov 8. No abstract available.

PMID:
29116643
11.

Myxobacteria Are Able to Prey Broadly upon Clinically-Relevant Pathogens, Exhibiting a Prey Range Which Cannot Be Explained by Phylogeny.

Livingstone PG, Morphew RM, Whitworth DE.

Front Microbiol. 2017 Aug 22;8:1593. doi: 10.3389/fmicb.2017.01593. eCollection 2017.

12.

The Myxobacterium Myxococcus xanthus Can Sense and Respond to the Quorum Signals Secreted by Potential Prey Organisms.

Lloyd DG, Whitworth DE.

Front Microbiol. 2017 Mar 14;8:439. doi: 10.3389/fmicb.2017.00439. eCollection 2017.

13.

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N.

Bioinformatics. 2016 Nov 1;32(21):3339-3341. Epub 2016 Jul 4.

PMID:
27378293
14.

Can the Bacterial Community of a High Arctic Glacier Surface Escape Viral Control?

Rassner SM, Anesio AM, Girdwood SE, Hell K, Gokul JK, Whitworth DE, Edwards A.

Front Microbiol. 2016 Jun 21;7:956. doi: 10.3389/fmicb.2016.00956. eCollection 2016.

15.

Recasting a traditional laboratory practical as a "Design-your-own protocol" to teach a universal research skill.

Whitworth DE.

Biochem Mol Biol Educ. 2016 Jul 8;44(4):377-80. doi: 10.1002/bmb.20948. Epub 2016 Feb 11.

16.

Synergism Between Bacterial GAPDH and OMVs: Disparate Mechanisms but Co-Operative Action.

Whitworth DE, Morgan BH.

Front Microbiol. 2015 Nov 9;6:1231. doi: 10.3389/fmicb.2015.01231. eCollection 2015. No abstract available.

17.

An off-the-shelf, authentic, and versatile undergraduate molecular biology practical course.

Whitworth DE.

Biochem Mol Biol Educ. 2015 Nov-Dec;43(6):434-40. doi: 10.1002/bmb.20893. Epub 2015 Oct 30.

18.

Genome-wide analysis of myxobacterial two-component systems: genome relatedness and evolutionary changes.

Whitworth DE.

BMC Genomics. 2015 Oct 13;16:780. doi: 10.1186/s12864-015-2018-y.

19.

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N.

BMC Bioinformatics. 2015 Sep 18;16:297. doi: 10.1186/s12859-015-0741-7.

20.

Composition of distinct sub-proteomes in Myxococcus xanthus: metabolic cost and amino acid availability.

Whitworth DE, Slade SE, Mironas A.

Amino Acids. 2015 Dec;47(12):2521-31. doi: 10.1007/s00726-015-2042-x. Epub 2015 Jul 11.

PMID:
26162436
21.

P2CS: updates of the prokaryotic two-component systems database.

Ortet P, Whitworth DE, Santaella C, Achouak W, Barakat M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D536-41. doi: 10.1093/nar/gku968. Epub 2014 Oct 16.

22.

The fist bump: a more hygienic alternative to the handshake.

Mela S, Whitworth DE.

Am J Infect Control. 2014 Aug;42(8):916-7. doi: 10.1016/j.ajic.2014.04.011.

PMID:
25087144
23.

P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.

24.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

25.

Predatory activity of Myxococcus xanthus outer-membrane vesicles and properties of their hydrolase cargo.

Evans AGL, Davey HM, Cookson A, Currinn H, Cooke-Fox G, Stanczyk PJ, Whitworth DE.

Microbiology. 2012 Nov;158(Pt 11):2742-2752. doi: 10.1099/mic.0.060343-0. Epub 2012 Sep 13.

PMID:
22977088
26.

Myxobacterial vesicles death at a distance?

Whitworth DE.

Adv Appl Microbiol. 2011;75:1-31. doi: 10.1016/B978-0-12-387046-9.00001-3. Review.

PMID:
21807244
27.

The genetic organisation of prokaryotic two-component system signalling pathways.

Williams RH, Whitworth DE.

BMC Genomics. 2010 Dec 20;11:720. doi: 10.1186/1471-2164-11-720.

28.

P2CS: a database of prokaryotic two-component systems.

Barakat M, Ortet P, Whitworth DE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D771-6. doi: 10.1093/nar/gkq1023. Epub 2010 Nov 4.

29.

Correlations between the role, sequence conservation, genomic location and severity of phenotype in myxobacterial developmental genes.

Evans AR, Whitworth DE.

FEMS Microbiol Lett. 2010 Nov;312(1):40-5. doi: 10.1111/j.1574-6968.2010.02092.x. Epub 2010 Aug 27.

30.

Spatial simulations of myxobacterial development.

Holmes AB, Kalvala S, Whitworth DE.

PLoS Comput Biol. 2010 Feb 26;6(2):e1000686. doi: 10.1371/journal.pcbi.1000686.

31.

Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps.

Cock PJ, Whitworth DE.

Mol Biol Evol. 2010 Apr;27(4):753-6. doi: 10.1093/molbev/msp302. Epub 2009 Dec 14. Erratum in: Mol Biol Evol. 2010 Nov;27(11):2665.

PMID:
20008458
32.

P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.

33.

Evolution of prokaryotic two-component systems: insights from comparative genomics.

Whitworth DE, Cock PJ.

Amino Acids. 2009 Sep;37(3):459-66. doi: 10.1007/s00726-009-0259-2. Epub 2009 Feb 25. Review.

PMID:
19241119
34.

Genomes and knowledge - a questionable relationship?

Whitworth DE.

Trends Microbiol. 2008 Nov;16(11):512-9. doi: 10.1016/j.tim.2008.08.001. Epub 2008 Sep 24.

PMID:
18819801
35.

Protein-protein interactions between two-component system transmitter and receiver domains of Myxococcus xanthus.

Whitworth DE, Millard A, Hodgson DA, Hawkins PF.

Proteomics. 2008 May;8(9):1839-42. doi: 10.1002/pmic.200700544.

PMID:
18442170
36.

Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships.

Whitworth DE, Cock PJA.

Microbiology. 2008 Feb;154(Pt 2):360-372. doi: 10.1099/mic.0.2007/013672-0.

PMID:
18227240
37.

Phosphate acquisition components of the Myxococcus xanthus Pho regulon are regulated by both phosphate availability and development.

Whitworth DE, Holmes AB, Irvine AG, Hodgson DA, Scanlan DJ.

J Bacteriol. 2008 Mar;190(6):1997-2003. doi: 10.1128/JB.01781-07. Epub 2008 Jan 4.

38.

Complete genome sequence of the myxobacterium Sorangium cellulosum.

Schneiker S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Muñoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter FJ, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Blöcker H, Pühler A, Müller R.

Nat Biotechnol. 2007 Nov;25(11):1281-9. Epub 2007 Oct 28.

PMID:
17965706
39.

Evolution of prokaryotic two-component system signaling pathways: gene fusions and fissions.

Cock PJ, Whitworth DE.

Mol Biol Evol. 2007 Nov;24(11):2355-7. Epub 2007 Aug 19.

PMID:
17709334
40.

Evolution of gene overlaps: relative reading frame bias in prokaryotic two-component system genes.

Cock PJ, Whitworth DE.

J Mol Evol. 2007 Apr;64(4):457-62. Epub 2007 Mar 19.

PMID:
17479344
41.

The response regulator PhoP4 is required for late developmental events in Myxococcus xanthus.

Pham VD, Shebelut CW, Jose IR, Hodgson DA, Whitworth DE, Singer M.

Microbiology. 2006 Jun;152(Pt 6):1609-20.

PMID:
16735725
42.
43.

Genetic dissection of the light-inducible carQRS promoter region of Myxococcus xanthus.

Whitworth DE, Bryan SJ, Berry AE, McGowan SJ, Hodgson DA.

J Bacteriol. 2004 Dec;186(23):7836-46.

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46.

Correlates of dental student stress.

George JM, Whitworth DE, Sturdevant JR, Lundeen TF.

J Dent Educ. 1987 Aug;51(8):481-5.

PMID:
3475332

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