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Items: 1 to 50 of 151

1.

Draft genome sequences of the diarrheagenic Escherichia coli collection.

Hazen TH, Sahl JW, Redman JC, Morris CR, Daugherty SC, Chibucos MC, Sengamalay NA, Fraser-Liggett CM, Steinsland H, Whittam TS, Whittam B, Manning SD, Rasko DA.

J Bacteriol. 2012 Jun;194(11):3026-7. doi: 10.1128/JB.00426-12.

2.

Obscured phylogeny and possible recombinational dormancy in Escherichia coli.

Leopold SR, Sawyer SA, Whittam TS, Tarr PI.

BMC Evol Biol. 2011 Jun 27;11:183. doi: 10.1186/1471-2148-11-183.

3.

Ancestral lineages of human enterotoxigenic Escherichia coli.

Steinsland H, Lacher DW, Sommerfelt H, Whittam TS.

J Clin Microbiol. 2010 Aug;48(8):2916-24. doi: 10.1128/JCM.02432-09. Epub 2010 Jun 9.

4.

Increased adherence and expression of virulence genes in a lineage of Escherichia coli O157:H7 commonly associated with human infections.

Abu-Ali GS, Ouellette LM, Henderson ST, Lacher DW, Riordan JT, Whittam TS, Manning SD.

PLoS One. 2010 Apr 21;5(4):e10167. doi: 10.1371/journal.pone.0010167.

5.

Escherichia albertii in wild and domestic birds.

Oaks JL, Besser TE, Walk ST, Gordon DM, Beckmen KB, Burek KA, Haldorson GJ, Bradway DS, Ouellette L, Rurangirwa FR, Davis MA, Dobbin G, Whittam TS.

Emerg Infect Dis. 2010 Apr;16(4):638-46. doi: 10.3201/eid1604.090695.

6.

Inactivation of alternative sigma factor 54 (RpoN) leads to increased acid resistance, and alters locus of enterocyte effacement (LEE) expression in Escherichia coli O157 : H7.

Riordan JT, Tietjen JA, Walsh CW, Gustafson JE, Whittam TS.

Microbiology. 2010 Mar;156(Pt 3):719-30. doi: 10.1099/mic.0.032631-0. Epub 2009 Nov 26.

7.

Differences in adherence and virulence gene expression between two outbreak strains of enterohaemorrhagic Escherichia coli O157 : H7.

Abu-Ali GS, Ouellette LM, Henderson ST, Whittam TS, Manning SD.

Microbiology. 2010 Feb;156(Pt 2):408-19. doi: 10.1099/mic.0.033126-0. Epub 2009 Nov 5.

8.

Differential expression of virulence and stress fitness genes between Escherichia coli O157:H7 strains with clinical or bovine-biased genotypes.

Vanaja SK, Springman AC, Besser TE, Whittam TS, Manning SD.

Appl Environ Microbiol. 2010 Jan;76(1):60-8. doi: 10.1128/AEM.01666-09. Epub 2009 Oct 30.

9.

Use of multiple-locus variable number tandem repeat analysis and phage typing for subtyping of Salmonella Enteritidis from sporadic human cases in the United States.

Cho S, Whittam TS, Boxrud DJ, Bartkus JM, Rankin SC, Wilkins MJ, Somsel P, Downes FP, Musser KA, Root TP, Warnick LD, Wiedmann M, Saeed AM.

J Appl Microbiol. 2010 Mar;108(3):859-67. doi: 10.1111/j.1365-2672.2009.04492.x. Epub 2009 Jul 20.

10.

Cryptic lineages of the genus Escherichia.

Walk ST, Alm EW, Gordon DM, Ram JL, Toranzos GA, Tiedje JM, Whittam TS.

Appl Environ Microbiol. 2009 Oct;75(20):6534-44. doi: 10.1128/AEM.01262-09. Epub 2009 Aug 21.

11.

Selection, recombination, and virulence gene diversity among group B streptococcal genotypes.

Springman AC, Lacher DW, Wu G, Milton N, Whittam TS, Davies HD, Manning SD.

J Bacteriol. 2009 Sep;191(17):5419-27. doi: 10.1128/JB.00369-09. Epub 2009 Jul 6.

12.

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex.

Abu-Ali GS, Lacher DW, Wick LM, Qi W, Whittam TS.

BMC Genomics. 2009 Jul 3;10:296. doi: 10.1186/1471-2164-10-296.

13.

Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence.

Kulasekara BR, Jacobs M, Zhou Y, Wu Z, Sims E, Saenphimmachak C, Rohmer L, Ritchie JM, Radey M, McKevitt M, Freeman TL, Hayden H, Haugen E, Gillett W, Fong C, Chang J, Beskhlebnaya V, Waldor MK, Samadpour M, Whittam TS, Kaul R, Brittnacher M, Miller SI.

Infect Immun. 2009 Sep;77(9):3713-21. doi: 10.1128/IAI.00198-09. Epub 2009 Jun 29.

14.

Genetic diversity and multihost pathogenicity of clinical and environmental strains of Burkholderia cenocepacia.

Springman AC, Jacobs JL, Somvanshi VS, Sundin GW, Mulks MH, Whittam TS, Viswanathan P, Gray RL, Lipuma JJ, Ciche TA.

Appl Environ Microbiol. 2009 Aug;75(16):5250-60. doi: 10.1128/AEM.00877-09. Epub 2009 Jun 19.

15.

Characterisation of atypical enteropathogenic E. coli strains of clinical origin.

Tennant SM, Tauschek M, Azzopardi K, Bigham A, Bennett-Wood V, Hartland EL, Qi W, Whittam TS, Robins-Browne RM.

BMC Microbiol. 2009 Jun 3;9:117. doi: 10.1186/1471-2180-9-117.

16.

A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis.

Leopold SR, Magrini V, Holt NJ, Shaikh N, Mardis ER, Cagno J, Ogura Y, Iguchi A, Hayashi T, Mellmann A, Karch H, Besser TE, Sawyer SA, Whittam TS, Tarr PI.

Proc Natl Acad Sci U S A. 2009 May 26;106(21):8713-8. doi: 10.1073/pnas.0812949106. Epub 2009 May 13.

17.

Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice.

Bergholz TM, Vanaja SK, Whittam TS.

Appl Environ Microbiol. 2009 Jun;75(11):3542-53. doi: 10.1128/AEM.02841-08. Epub 2009 Apr 3.

18.

Multiple factors interact to produce responses resembling spectrum of human disease in Campylobacter jejuni infected C57BL/6 IL-10-/- mice.

Bell JA, St Charles JL, Murphy AJ, Rathinam VA, Plovanich-Jones AE, Stanley EL, Wolf JE, Gettings JR, Whittam TS, Mansfield LS.

BMC Microbiol. 2009 Mar 18;9:57. doi: 10.1186/1471-2180-9-57.

19.

Shiga toxin-producing Escherichia coli strains negative for locus of enterocyte effacement.

Newton HJ, Sloan J, Bulach DM, Seemann T, Allison CC, Tauschek M, Robins-Browne RM, Paton JC, Whittam TS, Paton AW, Hartland EL.

Emerg Infect Dis. 2009 Mar;15(3):372-80. doi: 10.3201/eid1503.080631.

20.

Multilocus sequence types associated with neonatal group B streptococcal sepsis and meningitis in Canada.

Manning SD, Springman AC, Lehotzky E, Lewis MA, Whittam TS, Davies HD.

J Clin Microbiol. 2009 Apr;47(4):1143-8. doi: 10.1128/JCM.01424-08. Epub 2009 Jan 21.

21.

Comparison of probe hybridization array typing to multilocus sequence typing for pathogenic Escherichia coli.

McNamara SE, Srinivasan U, Zhang L, Whittam TS, Marrs CF, Foxman B.

J Clin Microbiol. 2009 Mar;47(3):596-602. doi: 10.1128/JCM.01693-08. Epub 2009 Jan 14.

22.

Characterization of the Escherichia coli O157:H7 Sakai GadE regulon.

Kailasan Vanaja S, Bergholz TM, Whittam TS.

J Bacteriol. 2009 Mar;191(6):1868-77. doi: 10.1128/JB.01481-08. Epub 2008 Dec 29.

23.

Allele distribution and genetic diversity of VNTR loci in Salmonella enterica serotype Enteritidis isolates from different sources.

Cho S, Whittam TS, Boxrud DJ, Bartkus JM, Saeed AM.

BMC Microbiol. 2008 Sep 15;8:146. doi: 10.1186/1471-2180-8-146.

24.

Phylogenetic analysis of Clostridium botulinum type A by multi-locus sequence typing.

Jacobson MJ, Lin G, Whittam TS, Johnson EA.

Microbiology. 2008 Aug;154(Pt 8):2408-15. doi: 10.1099/mic.0.2008/016915-0.

25.

Convergent evolutionary analysis identifies significant mutations in drug resistance targets of Mycobacterium tuberculosis.

Hazbón MH, Motiwala AS, Cavatore M, Brimacombe M, Whittam TS, Alland D.

Antimicrob Agents Chemother. 2008 Sep;52(9):3369-76. doi: 10.1128/AAC.00309-08. Epub 2008 Jun 30.

26.

Genomic O island 122, locus for enterocyte effacement, and the evolution of virulent verocytotoxin-producing Escherichia coli.

Konczy P, Ziebell K, Mascarenhas M, Choi A, Michaud C, Kropinski AM, Whittam TS, Wickham M, Finlay B, Karmali MA.

J Bacteriol. 2008 Sep;190(17):5832-40. doi: 10.1128/JB.00480-08. Epub 2008 Jun 27.

27.

Escherichia coli colonizing the neurogenic bladder are similar to widespread clones causing disease in patients with normal bladder function.

Schlager TA, Johnson JR, Ouellette LM, Whittam TS.

Spinal Cord. 2008 Sep;46(9):633-8. doi: 10.1038/sc.2008.60. Epub 2008 Jun 17.

PMID:
18560376
28.

Genetic diversity and antimicrobial resistance in group B streptococcus colonizing young, nonpregnant women.

Manning SD, Schaeffer KE, Springman AC, Lehotzky E, Lewis MA, Ouellette LM, Wu G, Moorer GM, Whittam TS, Davies HD.

Clin Infect Dis. 2008 Aug 1;47(3):388-90. doi: 10.1086/589864.

PMID:
18558880
29.

Genotypic diversity and serotype distribution of group B streptococcus isolated from women before and after delivery.

Manning SD, Lewis MA, Springman AC, Lehotzky E, Whittam TS, Davies HD.

Clin Infect Dis. 2008 Jun 15;46(12):1829-37. doi: 10.1086/588296.

PMID:
18462173
30.

Pathogenesis of renal disease due to enterohemorrhagic Escherichia coli in germ-free mice.

Eaton KA, Friedman DI, Francis GJ, Tyler JS, Young VB, Haeger J, Abu-Ali G, Whittam TS.

Infect Immun. 2008 Jul;76(7):3054-63. doi: 10.1128/IAI.01626-07. Epub 2008 Apr 28.

31.

Genetic differentiation of Escherichia coli O157:H7 clades associated with human disease by real-time PCR.

Riordan JT, Viswanath SB, Manning SD, Whittam TS.

J Clin Microbiol. 2008 Jun;46(6):2070-3. doi: 10.1128/JCM.00203-08. Epub 2008 Apr 9.

32.

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks.

Manning SD, Motiwala AS, Springman AC, Qi W, Lacher DW, Ouellette LM, Mladonicky JM, Somsel P, Rudrik JT, Dietrich SE, Zhang W, Swaminathan B, Alland D, Whittam TS.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4868-73. doi: 10.1073/pnas.0710834105. Epub 2008 Mar 10.

33.

Genetic diversity among clonal lineages within Escherichia coli O157:H7 stepwise evolutionary model.

Feng PC, Monday SR, Lacher DW, Allison L, Siitonen A, Keys C, Eklund M, Nagano H, Karch H, Keen J, Whittam TS.

Emerg Infect Dis. 2007 Nov;13(11):1701-6. doi: 10.3201/eid1311.070381.

34.

Applicability of phylogenetic methods for characterizing the public health significance of verocytotoxin-producing Escherichia coli strains.

Ziebell K, Konczy P, Yong I, Frost S, Mascarenhas M, Kropinski AM, Whittam TS, Read SC, Karmali MA.

Appl Environ Microbiol. 2008 Mar;74(5):1671-5. doi: 10.1128/AEM.01619-07. Epub 2007 Dec 28.

35.

Molecular characterization reveals similar virulence gene content in unrelated clonal groups of Escherichia coli of serogroup O174 (OX3).

Tarr CL, Nelson AM, Beutin L, Olsen KE, Whittam TS.

J Bacteriol. 2008 Feb;190(4):1344-9. Epub 2007 Dec 14.

36.

Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium.

Bergholz TM, Wick LM, Qi W, Riordan JT, Ouellette LM, Whittam TS.

BMC Microbiol. 2007 Oct 29;7:97.

37.

Influence of antibiotic selection on genetic composition of Escherichia coli populations from conventional and organic dairy farms.

Walk ST, Mladonicky JM, Middleton JA, Heidt AJ, Cunningham JR, Bartlett P, Sato K, Whittam TS.

Appl Environ Microbiol. 2007 Oct;73(19):5982-9. Epub 2007 Aug 17.

38.

Multiple-locus variable-number tandem repeat analysis of Salmonella Enteritidis isolates from human and non-human sources using a single multiplex PCR.

Cho S, Boxrud DJ, Bartkus JM, Whittam TS, Saeed M.

FEMS Microbiol Lett. 2007 Oct;275(1):16-23. Epub 2007 Aug 10.

39.

Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches.

Walk ST, Alm EW, Calhoun LM, Mladonicky JM, Whittam TS.

Environ Microbiol. 2007 Sep;9(9):2274-88.

PMID:
17686024
40.

Recent gene conversions between duplicated glutamate decarboxylase genes (gadA and gadB) in pathogenic Escherichia coli.

Bergholz TM, Tarr CL, Christensen LM, Betting DJ, Whittam TS.

Mol Biol Evol. 2007 Oct;24(10):2323-33. Epub 2007 Aug 4.

PMID:
17675652
41.

Surveillance for Shiga toxin-producing Escherichia coli, Michigan, 2001-2005.

Manning SD, Madera RT, Schneider W, Dietrich SE, Khalife W, Brown W, Whittam TS, Somsel P, Rudrik JT.

Emerg Infect Dis. 2007 Feb;13(2):318-21.

42.
43.

Greater diversity of Shiga toxin-encoding bacteriophage insertion sites among Escherichia coli O157:H7 isolates from cattle than in those from humans.

Besser TE, Shaikh N, Holt NJ, Tarr PI, Konkel ME, Malik-Kale P, Walsh CW, Whittam TS, Bono JL.

Appl Environ Microbiol. 2007 Feb;73(3):671-9. Epub 2006 Dec 1. Erratum in: Appl Environ Microbiol. 2008 Jan;74(2):554.

44.

Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling.

Lacher DW, Steinsland H, Blank TE, Donnenberg MS, Whittam TS.

J Bacteriol. 2007 Jan;189(2):342-50. Epub 2006 Nov 10.

45.

Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis.

Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS.

J Clin Microbiol. 2007 Jan;45(1):39-46. Epub 2006 Nov 1.

46.

Allelic subtyping of the intimin locus (eae) of pathogenic Escherichia coli by fluorescent RFLP.

Lacher DW, Steinsland H, Whittam TS.

FEMS Microbiol Lett. 2006 Aug;261(1):80-7.

47.

Clonal structure and variation in virulence of Salmonella enteritidis isolated from mice, chickens, and humans.

Saeed AM, Walk ST, Arshad M, Whittam TS.

J AOAC Int. 2006 Mar-Apr;89(2):504-11.

PMID:
16640300
48.

Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

Zhang W, Qi W, Albert TJ, Motiwala AS, Alland D, Hyytia-Trees EK, Ribot EM, Fields PI, Whittam TS, Swaminathan B.

Genome Res. 2006 Jun;16(6):757-67. Epub 2006 Apr 10.

49.

Produce isolates of the Escherichia coli Ont:H52 serotype that carry both Shiga toxin 1 and stable toxin genes.

Monday SR, Keys C, Hanson P, Shen Y, Whittam TS, Feng P.

Appl Environ Microbiol. 2006 Apr;72(4):3062-5.

50.

Differentiation of Escherichia coli pathotypes by oligonucleotide spotted array.

Palaniappan RU, Zhang Y, Chiu D, Torres A, Debroy C, Whittam TS, Chang YF.

J Clin Microbiol. 2006 Apr;44(4):1495-501.

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