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Items: 1 to 50 of 132


Measuring rank robustness in scored protein interaction networks.

Bozhilova LV, Whitmore AV, Wray J, Reinert G, Deane CM.

BMC Bioinformatics. 2019 Aug 28;20(1):446. doi: 10.1186/s12859-019-3036-6.


Accounting for data sparsity when forming spatially coherent zones.

Hassall KL, Whitmore AP, Milne AE.

Appl Math Model. 2019 Aug;72:537-552. doi: 10.1016/j.apm.2019.03.030.


Multi-objective optimization as a tool to identify possibilities for future agricultural landscapes.

Todman LC, Coleman K, Milne AE, Gil JDB, Reidsma P, Schwoob MH, Treyer S, Whitmore AP.

Sci Total Environ. 2019 Oct 15;687:535-545. doi: 10.1016/j.scitotenv.2019.06.070. Epub 2019 Jun 6.


Exploring Future Food Provision Scenarios for China.

Ma L, Bai Z, Ma W, Guo M, Jiang R, Liu J, Oenema O, Velthof GL, Whitmore AP, Crawford J, Dobermann A, Schwoob M, Zhang F.

Environ Sci Technol. 2019 Feb 5;53(3):1385-1393. doi: 10.1021/acs.est.8b04375. Epub 2019 Jan 22.


Networks for better drug discovery: making optimal use of existing chemical space.

Whitmore AV, Wray J.

Future Med Chem. 2018 Dec 5. doi: 10.4155/fmc-2018-0265. [Epub ahead of print] No abstract available.


The environmental costs and benefits of high-yield farming.

Balmford A, Amano T, Bartlett H, Chadwick D, Collins A, Edwards D, Field R, Garnsworthy P, Green R, Smith P, Waters H, Whitmore A, Broom DM, Chara J, Finch T, Garnett E, Gathorne-Hardy A, Hernandez-Medrano J, Herrero M, Hua F, Latawiec A, Misselbrook T, Phalan B, Simmons BI, Takahashi T, Vause J, Zu Ermgassen E, Eisner R.

Nat Sustain. 2018 Sep 14;1(9):477-485.


Complement Activation Contributes to Severe Acute Respiratory Syndrome Coronavirus Pathogenesis.

Gralinski LE, Sheahan TP, Morrison TE, Menachery VD, Jensen K, Leist SR, Whitmore A, Heise MT, Baric RS.

mBio. 2018 Oct 9;9(5). pii: e01753-18. doi: 10.1128/mBio.01753-18.


Sustainable development goal 2: Improved targets and indicators for agriculture and food security.

Gil JDB, Reidsma P, Giller K, Todman L, Whitmore A, van Ittersum M.

Ambio. 2019 Jul;48(7):685-698. doi: 10.1007/s13280-018-1101-4. Epub 2018 Sep 28. Review.


The Relation among Prostate Cancer Knowledge and Psychosocial Factors for Prostate Cancer Screening among African American Men: a Correlational Study.

Dickey SL, Whitmore A, Campbell E.

AIMS Public Health. 2017 Oct 25;4(5):446-465. doi: 10.3934/publichealth.2017.5.446. eCollection 2017.


Evidence for functional state transitions in intensively-managed soil ecosystems.

Todman LC, Fraser FC, Corstanje R, Harris JA, Pawlett M, Ritz K, Whitmore AP.

Sci Rep. 2018 Aug 1;8(1):11522. doi: 10.1038/s41598-018-29925-2.


Synergistic Effect of Endogenous and Exogenous Aldehydes on Doxorubicin Toxicity in Yeast.

Miles JS, Sojourner SJ, Whitmore AM, Freeny D, Darling-Reed S, Flores-Rozas H.

Biomed Res Int. 2018 May 30;2018:4938189. doi: 10.1155/2018/4938189. eCollection 2018.


Impact of two centuries of intensive agriculture on soil carbon, nitrogen and phosphorus cycling in the UK.

Muhammed SE, Coleman K, Wu L, Bell VA, Davies JAC, Quinton JN, Carnell EJ, Tomlinson SJ, Dore AJ, Dragosits U, Naden PS, Glendining MJ, Tipping E, Whitmore AP.

Sci Total Environ. 2018 Sep 1;634:1486-1504. doi: 10.1016/j.scitotenv.2018.03.378. Epub 2018 Apr 18.


The Role of HSP40 Conserved Motifs in the Response to Cytotoxic Stress.

Sojourner SJ, Graham WM, Whitmore AM, Miles JS, Freeny D, Flores-Rozas H.

J Nat Sci. 2018;4(4). pii: e500.



Miles JS, Sojourner SJ, Jaafar L, Whitmore A, Darling-Reed S, Flores-Rozas H.

Int J Adv Res (Indore). 2018 Mar;6(3):144-152.


The priming function of in-car audio instruction.

Keyes H, Whitmore A, Naneva S, McDermott D.

Q J Exp Psychol (Hove). 2019 Mar;72(3):643-650. doi: 10.1177/1747021818773293. Epub 2018 May 10.


Development of a Broadly Accessible Venezuelan Equine Encephalitis Virus Replicon Particle Vaccine Platform.

Agnihothram S, Menachery VD, Yount BL Jr.,, Lindesmith LC, Scobey T, Whitmore A, Schäfer A, Heise MT, Baric RS.

J Virol. 2018 May 14;92(11). pii: e00027-18. doi: 10.1128/JVI.00027-18. Print 2018 Jun 1.


Language Assessment for Children With a Range of Neurodevelopmental Disorders Across Four Languages in South Africa.

Romski M, Bornman J, Sevcik RA, Tönsing K, Barton-Hulsey A, Morwane R, Whitmore A, White R.

Am J Speech Lang Pathol. 2018 May 3;27(2):602-615. doi: 10.1044/2017_AJSLP-17-0035.


Ross River virus envelope glycans contribute to disease through activation of the host complement system.

Gunn BM, Jones JE, Shabman RS, Whitmore AC, Sarkar S, Blevins LK, Morrison TE, Heise MT.

Virology. 2018 Feb;515:250-260. doi: 10.1016/j.virol.2017.12.022. Epub 2018 Jan 8.


Bayesian Diallel Analysis Reveals Mx1-Dependent and Mx1-Independent Effects on Response to Influenza A Virus in Mice.

Maurizio PL, Ferris MT, Keele GR, Miller DR, Shaw GD, Whitmore AC, West A, Morrison CR, Noll KE, Plante KS, Cockrell AS, Threadgill DW, Pardo-Manuel de Villena F, Baric RS, Heise MT, Valdar W.

G3 (Bethesda). 2018 Feb 2;8(2):427-445. doi: 10.1534/g3.117.300438.


Disruption of the Opal Stop Codon Attenuates Chikungunya Virus-Induced Arthritis and Pathology.

Jones JE, Long KM, Whitmore AC, Sanders W, Thurlow LR, Brown JA, Morrison CR, Vincent H, Peck KM, Browning C, Moorman N, Lim JK, Heise MT.

mBio. 2017 Nov 14;8(6). pii: e01456-17. doi: 10.1128/mBio.01456-17.


A nonparametric significance test for sampled networks.

Elliott A, Leicht E, Whitmore A, Reinert G, Reed-Tsochas F.

Bioinformatics. 2018 Jan 1;34(1):64-71. doi: 10.1093/bioinformatics/btx419.


The landscape model: A model for exploring trade-offs between agricultural production and the environment.

Coleman K, Muhammed SE, Milne AE, Todman LC, Dailey AG, Glendining MJ, Whitmore AP.

Sci Total Environ. 2017 Dec 31;609:1483-1499. doi: 10.1016/j.scitotenv.2017.07.193. Epub 2017 Aug 8.


Milled cereal straw accelerates earthworm (Lumbricus terrestris) growth more than selected organic amendments.

Sizmur T, Martin E, Wagner K, Parmentier E, Watts C, Whitmore AP.

Appl Soil Ecol. 2017 May;113:166-177. doi: 10.1016/j.apsoil.2016.12.006.


Distinct respiratory responses of soils to complex organic substrate are governed predominantly by soil architecture and its microbial community.

Fraser FC, Todman LC, Corstanje R, Deeks LK, Harris JA, Pawlett M, Whitmore AP, Ritz K.

Soil Biol Biochem. 2016 Dec;103:493-501.


The North Wyke Farm Platform: effect of temperate grassland farming systems on soil moisture contents, runoff and associated water quality dynamics.

Orr RJ, Murray PJ, Eyles CJ, Blackwell MS, Cardenas LM, Collins AL, Dungait JA, Goulding KW, Griffith BA, Gurr SJ, Harris P, Hawkins JM, Misselbrook TH, Rawlings C, Shepherd A, Sint H, Takahashi T, Tozer KN, Whitmore AP, Wu L, Lee MR.

Eur J Soil Sci. 2016 Jul;67(4):374-385. Epub 2016 Jun 29.


On the origin of carbon dioxide released from rewetted soils.

Fraser FC, Corstanje R, Deeks LK, Harris JA, Pawlett M, Todman LC, Whitmore AP, Ritz K.

Soil Biol Biochem. 2016 Oct;101:1-5.


A review of the impacts of degradation threats on soil properties in the UK.

Gregory AS, Ritz K, McGrath SP, Quinton JN, Goulding KW, Jones RJ, Harris JA, Bol R, Wallace P, Pilgrim ES, Whitmore AP.

Soil Use Manag. 2015 Oct;31(Suppl Suppl 1):1-15. Epub 2015 Oct 12. Review.


Long-term management changes topsoil and subsoil organic carbon and nitrogen dynamics in a temperate agricultural system.

Gregory AS, Dungait JA, Watts CW, Bol R, Dixon ER, White RP, Whitmore AP.

Eur J Soil Sci. 2016 Jul;67(4):421-430. Epub 2016 Jul 15.


Defining and quantifying the resilience of responses to disturbance: a conceptual and modelling approach from soil science.

Todman LC, Fraser FC, Corstanje R, Deeks LK, Harris JA, Pawlett M, Ritz K, Whitmore AP.

Sci Rep. 2016 Jun 22;6:28426. doi: 10.1038/srep28426.


150years of macronutrient change in unfertilized UK ecosystems: Observations vs simulations.

Davies JAC, Tipping E, Whitmore AP.

Sci Total Environ. 2016 Dec 1;572:1485-1495. doi: 10.1016/j.scitotenv.2016.03.055. Epub 2016 Mar 21.


Sutureless Microsurgical Anastomosis Using an Optimized Thermoreversible Intravascular Poloxamer Stent.

Davis CR, Rappleye CT, Than PA, Rodrigues M, Findlay MW, Bishop SN, Whitmore AJ, Maan ZN, McGoldrick RB, Grobbelaar AO, Gurtner GC.

Plast Reconstr Surg. 2016 Feb;137(2):546-56. doi: 10.1097/01.prs.0000475774.37267.3f.


The Effect of Farmers' Decisions on Pest Control with Bt Crops: A Billion Dollar Game of Strategy.

Milne AE, Bell JR, Hutchison WD, van den Bosch F, Mitchell PD, Crowder D, Parnell S, Whitmore AP.

PLoS Comput Biol. 2015 Dec 31;11(12):e1004483. doi: 10.1371/journal.pcbi.1004483. eCollection 2015 Dec.


Protein-protein interaction networks identify targets which rescue the MPP+ cellular model of Parkinson's disease.

Keane H, Ryan BJ, Jackson B, Whitmore A, Wade-Martins R.

Sci Rep. 2015 Nov 26;5:17004. doi: 10.1038/srep17004.


γδ T Cells Play a Protective Role in Chikungunya Virus-Induced Disease.

Long KM, Ferris MT, Whitmore AC, Montgomery SA, Thurlow LR, McGee CE, Rodriguez CA, Lim JK, Heise MT.

J Virol. 2015 Oct 21;90(1):433-43. doi: 10.1128/JVI.02159-15. Print 2016 Jan 1.


Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross.

Gralinski LE, Ferris MT, Aylor DL, Whitmore AC, Green R, Frieman MB, Deming D, Menachery VD, Miller DR, Buus RJ, Bell TA, Churchill GA, Threadgill DW, Katze MG, McMillan L, Valdar W, Heise MT, Pardo-Manuel de Villena F, Baric RS.

PLoS Genet. 2015 Oct 9;11(10):e1005504. doi: 10.1371/journal.pgen.1005504. eCollection 2015 Oct.


Communicating the uncertainty in estimated greenhouse gas emissions from agriculture.

Milne AE, Glendining MJ, Lark RM, Perryman SA, Gordon T, Whitmore AP.

J Environ Manage. 2015 Sep 1;160:139-53. doi: 10.1016/j.jenvman.2015.05.034. Epub 2015 Jul 16.


Early Intervention and AAC: What a Difference 30 Years Makes.

Romski M, Sevcik RA, Barton-Hulsey A, Whitmore AS.

Augment Altern Commun. 2015;31(3):181-202. doi: 10.3109/07434618.2015.1064163. Epub 2015 Jul 8. Review.


Simulation of nitrous oxide emissions at field scale using the SPACSYS model.

Wu L, Rees RM, Tarsitano D, Zhang X, Jones SK, Whitmore AP.

Sci Total Environ. 2015 Oct 15;530-531:76-86. doi: 10.1016/j.scitotenv.2015.05.064. Epub 2015 May 28.


Toll-Like Receptor 3 Signaling via TRIF Contributes to a Protective Innate Immune Response to Severe Acute Respiratory Syndrome Coronavirus Infection.

Totura AL, Whitmore A, Agnihothram S, Schäfer A, Katze MG, Heise MT, Baric RS.

mBio. 2015 May 26;6(3):e00638-15. doi: 10.1128/mBio.00638-15.


Exercise induces stromal cell-derived factor-1α-mediated release of endothelial progenitor cells with increased vasculogenic function.

Chang E, Paterno J, Duscher D, Maan ZN, Chen JS, Januszyk M, Rodrigues M, Rennert RC, Bishop S, Whitmore AJ, Whittam AJ, Longaker MT, Gurtner GC.

Plast Reconstr Surg. 2015 Feb;135(2):340e-50e. doi: 10.1097/PRS.0000000000000917.


Evaluating the Effect of Cell Culture on Gene Expression in Primary Tissue Samples Using Microfluidic-Based Single Cell Transcriptional Analysis.

Januszyk M, Rennert RC, Sorkin M, Maan ZN, Wong LK, Whittam AJ, Whitmore A, Duscher D, Gurtner GC.

Microarrays (Basel). 2015 Nov 4;4(4):540-50. doi: 10.3390/microarrays4040540.


Transdermal deferoxamine prevents pressure-induced diabetic ulcers.

Duscher D, Neofytou E, Wong VW, Maan ZN, Rennert RC, Inayathullah M, Januszyk M, Rodrigues M, Malkovskiy AV, Whitmore AJ, Walmsley GG, Galvez MG, Whittam AJ, Brownlee M, Rajadas J, Gurtner GC.

Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):94-9. doi: 10.1073/pnas.1413445112. Epub 2014 Dec 22.


A gnotobiotic mouse model demonstrates that dietary fiber protects against colorectal tumorigenesis in a microbiota- and butyrate-dependent manner.

Donohoe DR, Holley D, Collins LB, Montgomery SA, Whitmore AC, Hillhouse A, Curry KP, Renner SW, Greenwalt A, Ryan EP, Godfrey V, Heise MT, Threadgill DS, Han A, Swenberg JA, Threadgill DW, Bultman SJ.

Cancer Discov. 2014 Dec;4(12):1387-97. doi: 10.1158/2159-8290.CD-14-0501. Epub 2014 Sep 29.


Understanding regulatory pathways of neovascularization in diabetes.

Maan ZN, Rodrigues M, Rennert RC, Whitmore A, Duscher D, Januszyk M, Hu M, Whittam AJ, Davis CR, Gurtner GC.

Expert Rev Endocrinol Metab. 2014 Sep;9(5):487-501. doi: 10.1586/17446651.2014.938054.


Noncontact, low-frequency ultrasound therapy enhances neovascularization and wound healing in diabetic mice.

Maan ZN, Januszyk M, Rennert RC, Duscher D, Rodrigues M, Fujiwara T, Ho N, Whitmore A, Hu MS, Longaker MT, Gurtner GC.

Plast Reconstr Surg. 2014 Sep;134(3):402e-411e. doi: 10.1097/PRS.0000000000000467.


Early augmented language intervention for children with developmental delays: potential secondary motor outcomes.

Whitmore AS, Romski MA, Sevcik RA.

Augment Altern Commun. 2014 Sep;30(3):200-12. doi: 10.3109/07434618.2014.940466. Epub 2014 Aug 11.


Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression.

Xiong H, Morrison J, Ferris MT, Gralinski LE, Whitmore AC, Green R, Thomas MJ, Tisoncik-Go J, Schroth GP, Pardo-Manuel de Villena F, Baric RS, Heise MT, Peng X, Katze MG.

G3 (Bethesda). 2014 Jun 5;4(8):1429-44. doi: 10.1534/g3.114.011759.


Hip pain and a limp in a 10-year-old girl.

Whitmore AR.

JAAPA. 2014 May;27(5):49-50. doi: 10.1097/01.JAA.0000446223.32189.e5. No abstract available.


Mechanotransduction and fibrosis.

Duscher D, Maan ZN, Wong VW, Rennert RC, Januszyk M, Rodrigues M, Hu M, Whitmore AJ, Whittam AJ, Longaker MT, Gurtner GC.

J Biomech. 2014 Jun 27;47(9):1997-2005. doi: 10.1016/j.jbiomech.2014.03.031. Epub 2014 Mar 26. Review.


A mouse model for Betacoronavirus subgroup 2c using a bat coronavirus strain HKU5 variant.

Agnihothram S, Yount BL Jr, Donaldson EF, Huynh J, Menachery VD, Gralinski LE, Graham RL, Becker MM, Tomar S, Scobey TD, Osswald HL, Whitmore A, Gopal R, Ghosh AK, Mesecar A, Zambon M, Heise M, Denison MR, Baric RS.

mBio. 2014 Mar 25;5(2):e00047-14. doi: 10.1128/mBio.00047-14.

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