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Whole Genome Sequence of the Parasitoid Wasp Microplitis demolitor That Harbors an Endogenous Virus Mutualist.

Burke GR, Walden KKO, Whitfield JB, Robertson HM, Strand MR.

G3 (Bethesda). 2018 Aug 30;8(9):2875-2880. doi: 10.1534/g3.118.200308.


Bravyi-Kitaev Superfast simulation of electronic structure on a quantum computer.

Setia K, Whitfield JD.

J Chem Phys. 2018 Apr 28;148(16):164104. doi: 10.1063/1.5019371.


A new species of Cotesia Cameron (Hymenoptera, Braconidae, Microgastrinae) reared from the hickory horned devil, Citheronia regalis, and luna moth, Actias luna, in east Texas.

Whitfield JB, Nuelle RJ Jr, Nuelle RJ III.

Zookeys. 2018 Feb 27;(740):35-44. doi: 10.3897/zookeys.740.242226. eCollection 2018.


DiscoVista: Interpretable visualizations of gene tree discordance.

Sayyari E, Whitfield JB, Mirarab S.

Mol Phylogenet Evol. 2018 May;122:110-115. doi: 10.1016/j.ympev.2018.01.019. Epub 2018 Feb 5.


Systematics, Biology, and Evolution of Microgastrine Parasitoid Wasps.

Whitfield JB, Austin AD, Fernandez-Triana JL.

Annu Rev Entomol. 2018 Jan 7;63:389-406. doi: 10.1146/annurev-ento-020117-043405. Epub 2017 Oct 20.


Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction.

Sayyari E, Whitfield JB, Mirarab S.

Mol Biol Evol. 2017 Dec 1;34(12):3279-3291. doi: 10.1093/molbev/msx261.


Targeting Human Astrocytes' Calcium-sensing Receptors for Treatment of Alzheimer's Disease.

Chiarini A, Armato U, Whitfield JF, Pra ID.

Curr Pharm Des. 2017;23(33):4990-5000. doi: 10.2174/1381612823666170710162509.


Relative expression of the p75 neurotrophin receptor, tyrosine receptor kinase A, and insulin receptor in SH-SY5Y neuroblastoma cells and hippocampi from Alzheimer's disease patients.

Ito S, Ménard M, Atkinson T, Brown L, Whitfield J, Chakravarthy B.

Neurochem Int. 2016 Dec;101:22-29. doi: 10.1016/j.neuint.2016.09.015. Epub 2016 Sep 29.


A community integrated respiratory team can improve patient care, quality of life and reduce hospital stays.

Apps M, Minter J, Whitfield J, Field S, Pearce R, Haigh M, Rosier P, Hawkes B, Ateli L, Carter D, Webb S, Barfield S, Bannister P, Olympio-Anang H, Goodrich C, Finney J, Keeling LA.

Clin Med (Lond). 2016 Jun 1;16 Suppl 3:s33. doi: 10.7861/clinmedicine.16-3-s33. No abstract available.


The Possible Roles of the Dentate Granule Cell's Leptin and Other Ciliary Receptors in Alzheimer's Neuropathology.

Whitfield JF, Chiarini A, Dal Prà I, Armato U, Chakravarthy B.

Cells. 2015 Jul 13;4(3):253-74. doi: 10.3390/cells4030253. Review.


Preventing the spread of Alzheimer's disease neuropathology: a role for calcilytics?

Chiarini A, Gardenal E, Whitfield JF, Chakravarthy B, Armato U, Dal Pra I.

Curr Pharm Biotechnol. 2015;16(8):696-706. Review.


Quantum Simulation of Helium Hydride Cation in a Solid-State Spin Register.

Wang Y, Dolde F, Biamonte J, Babbush R, Bergholm V, Yang S, Jakobi I, Neumann P, Aspuru-Guzik A, Whitfield JD, Wrachtrup J.

ACS Nano. 2015 Aug 25;9(8):7769-74. doi: 10.1021/acsnano.5b01651. Epub 2015 Apr 29.


On the NP-completeness of the Hartree-Fock method for translationally invariant systems.

Whitfield JD, Zimborás Z.

J Chem Phys. 2014 Dec 21;141(23):234103. doi: 10.1063/1.4903453.


First record of the genus Venanus (Hymenoptera: Braconidae: Microgastrinae) in Mesoamerica, with the description of two new species from Costa Rica.

Fernandez-Triana JL, Whitfield JB, Smith MA, Hallwachs W, Janzen DH.

Biodivers Data J. 2014 Nov 13;(2):e4167. doi: 10.3897/BDJ.2.e4167. eCollection 2014.


Revision of the genus Pseudapanteles (Hymenoptera, Braconidae, Microgastrinae), with emphasis on the species in Area de Conservación Guanacaste, northwestern Costa Rica.

Fernández-Triana JL, Janzen DH, Hallwachs W, Whitfield JB, Smith MA, Kula R.

Zookeys. 2014 Oct 14;(446):1-82. doi: 10.3897/zookeys.446.8195. eCollection 2014.


Strepsiptera, phylogenomics and the long branch attraction problem.

Boussau B, Walton Z, Delgado JA, Collantes F, Beani L, Stewart IJ, Cameron SA, Whitfield JB, Johnston JS, Holland PW, Bachtrog D, Kathirithamby J, Huelsenbeck JP.

PLoS One. 2014 Oct 1;9(10):e107709. doi: 10.1371/journal.pone.0107709. eCollection 2014.


Widespread genome reorganization of an obligate virus mutualist.

Burke GR, Walden KK, Whitfield JB, Robertson HM, Strand MR.

PLoS Genet. 2014 Sep 18;10(9):e1004660. doi: 10.1371/journal.pgen.1004660. eCollection 2014 Sep.


The Aβ peptides-activated calcium-sensing receptor stimulates the production and secretion of vascular endothelial growth factor-A by normoxic adult human cortical astrocytes.

Dal Prà I, Armato U, Chioffi F, Pacchiana R, Whitfield JF, Chakravarthy B, Gui L, Chiarini A.

Neuromolecular Med. 2014 Dec;16(4):645-57. doi: 10.1007/s12017-014-8315-9. Epub 2014 Jun 20.


Do astrocytes collaborate with neurons in spreading the "infectious" aβ and Tau drivers of Alzheimer's disease?

Dal Prà I, Chiarini A, Gui L, Chakravarthy B, Pacchiana R, Gardenal E, Whitfield JF, Armato U.

Neuroscientist. 2015 Feb;21(1):9-29. doi: 10.1177/1073858414529828. Epub 2014 Apr 16.


First record of the genus Wilkinsonellus (Hymenoptera, Braconidae, Microgastrinae) from Fiji with description of three new species.

Arias-Penna DC, Zhang Y, Whitfield JB.

Zookeys. 2014 Apr 3;(397):25-47. doi: 10.3897/zookeys.397.7195. eCollection 2014.


Review of Apanteles sensu stricto (Hymenoptera, Braconidae, Microgastrinae) from Area de Conservación Guanacaste, northwestern Costa Rica, with keys to all described species from Mesoamerica.

Fernández-Triana JL, Whitfield JB, Rodriguez JJ, Smith MA, Janzen DH, Hallwachs WD, Hajibabaei M, Burns JM, Solis MA, Brown J, Cardinal S, Goulet H, Hebert PD.

Zookeys. 2014 Feb 24;(383):1-565. doi: 10.3897/zookeys.383.6418. eCollection 2014.


Evidence that a synthetic amyloid-ß oligomer-binding peptide (ABP) targets amyloid-ß deposits in transgenic mouse brain and human Alzheimer's disease brain.

Chakravarthy B, Ito S, Atkinson T, Gaudet C, Ménard M, Brown L, Whitfield J.

Biochem Biophys Res Commun. 2014 Mar 14;445(3):656-60. doi: 10.1016/j.bbrc.2014.02.064. Epub 2014 Feb 22.


The Doryctinae (Braconidae) of Costa Rica: genera and species of the tribe Heterospilini.

Marsh PM, Wild AL, Whitfield JB.

Zookeys. 2013 Nov 6;(347):1-474. doi: 10.3897/zookeys.347.6002. eCollection 2013.


Fast-evolving homoplastic traits are best for species identification in a group of neotropical wasps.

Wild AL, Marsh PM, Whitfield JB.

PLoS One. 2013 Sep 11;8(9):e74837. doi: 10.1371/journal.pone.0074837. eCollection 2013.


A review of the New World species of the parasitoid wasp Iconella (Hymenoptera, Braconidae, Microgastrinae).

Fernández-Triana JL, Cardinal S, Whitfield JB, Winnie Hallwachs, Smith MA, Janzenr DH.

Zookeys. 2013 Aug 7;(321):65-87. doi: 10.3897/zookeys.321.5160. eCollection 2013.


Quantum transport enhancement by time-reversal symmetry breaking.

Zimborás Z, Faccin M, Kádár Z, Whitfield JD, Lanyon BP, Biamonte J.

Sci Rep. 2013;3:2361. doi: 10.1038/srep02361.


Communication: Spin-free quantum computational simulations and symmetry adapted states.

Whitfield JD.

J Chem Phys. 2013 Jul 14;139(2):021105. doi: 10.1063/1.4812566.


Three new species in the genus Wilkinsonellus (Braconidae, Microgastrinae) from the Neotropics, and the first host record for the genus.

Arias-Penna DC, Whitfield JB, Janzen DH, Hallwachs W.

Zookeys. 2013 May 20;(302):79-95. doi: 10.3897/zookeys.302.4962. Print 2013.


Networks: expanding evolutionary thinking.

Bapteste E, van Iersel L, Janke A, Kelchner S, Kelk S, McInerney JO, Morrison DA, Nakhleh L, Steel M, Stougie L, Whitfield J.

Trends Genet. 2013 Aug;29(8):439-41. doi: 10.1016/j.tig.2013.05.007. Epub 2013 Jun 11.


Calcium-sensing receptor antagonist (calcilytic) NPS 2143 specifically blocks the increased secretion of endogenous Aβ42 prompted by exogenous fibrillary or soluble Aβ25-35 in human cortical astrocytes and neurons-therapeutic relevance to Alzheimer's disease.

Armato U, Chiarini A, Chakravarthy B, Chioffi F, Pacchiana R, Colarusso E, Whitfield JF, Dal Prà I.

Biochim Biophys Acta. 2013 Oct;1832(10):1634-52. doi: 10.1016/j.bbadis.2013.04.020. Epub 2013 Apr 26.


Parasitism rate, parasitoid community composition and host specificity on exposed and semi-concealed caterpillars from a tropical rainforest.

Hrcek J, Miller SE, Whitfield JB, Shima H, Novotny V.

Oecologia. 2013 Oct;173(2):521-32. doi: 10.1007/s00442-013-2619-6. Epub 2013 Mar 5.


A synthetic peptide corresponding to a region of the human pericentriolar material 1 (PCM-1) protein binds β-amyloid (Aβ1-42 ) oligomers.

Chakravarthy B, Ménard M, Brown L, Hewitt M, Atkinson T, Whitfield J.

J Neurochem. 2013 Aug;126(3):415-24. doi: 10.1111/jnc.12208. Epub 2013 Mar 18.


Computational complexity in electronic structure.

Whitfield JD, Love PJ, Aspuru-Guzik A.

Phys Chem Chem Phys. 2013 Jan 14;15(2):397-411. doi: 10.1039/c2cp42695a. Epub 2012 Nov 22.


Alzheimer's disease: an update of the roles of receptors, astrocytes and primary cilia (review).

Armato U, Chakravarthy B, Pacchiana R, Whitfield JF.

Int J Mol Med. 2013 Jan;31(1):3-10. doi: 10.3892/ijmm.2012.1162. Epub 2012 Oct 24. Review.


Reduction of the immunostainable length of the hippocampal dentate granule cells' primary cilia in 3xAD-transgenic mice producing human Aβ(1-42) and tau.

Chakravarthy B, Gaudet C, Ménard M, Brown L, Atkinson T, Laferla FM, Ito S, Armato U, Dal Prà I, Whitfield J.

Biochem Biophys Res Commun. 2012 Oct 12;427(1):218-22. doi: 10.1016/j.bbrc.2012.09.056. Epub 2012 Sep 17.


Mariapanteles (Hymenoptera, Braconidae), a new genus of Neotropical microgastrine parasitoid wasp discovered through biodiversity inventory.

Whitfield JB, Fernández-Triana JL, Janzen DH, Hallwachs W, Smith MA, Cardinal S.

Zookeys. 2012;(208):61-80. doi: 10.3897/zookeys.208.3326. Epub 2012 Jul 17.


The calcium-sensing receptor: a novel Alzheimer's disease crucial target?

Armato U, Bonafini C, Chakravarthy B, Pacchiana R, Chiarini A, Whitfield JF, Dal Prà I.

J Neurol Sci. 2012 Nov 15;322(1-2):137-40. doi: 10.1016/j.jns.2012.07.031. Epub 2012 Jul 28. Review.


Identification of protein kinase C inhibitory activity associated with a polypeptide isolated from a phage display system with homology to PCM-1, the pericentriolar material-1 protein.

Chakravarthy B, Ménard M, Brown L, Atkinson T, Whitfield J.

Biochem Biophys Res Commun. 2012 Jul 20;424(1):147-51. doi: 10.1016/j.bbrc.2012.06.093. Epub 2012 Jun 23.


Involvement of insulin-like growth factor 1 receptor signaling in the amyloid-β peptide oligomers-induced p75 neurotrophin receptor protein expression in mouse hippocampus.

Ito S, Ménard M, Atkinson T, Gaudet C, Brown L, Whitfield J, Chakravarthy B.

J Alzheimers Dis. 2012;31(3):493-506. doi: 10.3233/JAD-2012-120046.


Wolbachia and DNA barcoding insects: patterns, potential, and problems.

Smith MA, Bertrand C, Crosby K, Eveleigh ES, Fernandez-Triana J, Fisher BL, Gibbs J, Hajibabaei M, Hallwachs W, Hind K, Hrcek J, Huang DW, Janda M, Janzen DH, Li Y, Miller SE, Packer L, Quicke D, Ratnasingham S, Rodriguez J, Rougerie R, Shaw MR, Sheffield C, Stahlhut JK, Steinke D, Whitfield J, Wood M, Zhou X.

PLoS One. 2012;7(5):e36514. doi: 10.1371/journal.pone.0036514. Epub 2012 May 2.


Utility of the DNA barcoding gene fragment for parasitic wasp phylogeny (Hymenoptera: Ichneumonoidea): data release and new measure of taxonomic congruence.

Quicke DL, Smith MA, Janzen DH, Hallwachs W, Fernandez-Triana J, Laurenne NM, Zaldívar-Riverón A, Shaw MR, Broad GR, Klopfstein S, Shaw SR, Hrcek J, Hebert PD, Miller SE, Rodriguez JJ, Whitfield JB, Sharkey MJ, Sharanowski BJ, Jussila R, Gauld ID, Chesters D, Vogler AP.

Mol Ecol Resour. 2012 Jul;12(4):676-85. doi: 10.1111/j.1755-0998.2012.03143.x. Epub 2012 Apr 9.


Hippocampal membrane-associated p75NTR levels are increased in Alzheimer's disease.

Chakravarthy B, Ménard M, Ito S, Gaudet C, Dal Prà I, Armato U, Whitfield J.

J Alzheimers Dis. 2012;30(3):675-84. doi: 10.3233/JAD-2012-120115.


Solving quantum ground-state problems with nuclear magnetic resonance.

Li Z, Yung MH, Chen H, Lu D, Whitfield JD, Peng X, Aspuru-Guzik A, Du J.

Sci Rep. 2011;1:88. doi: 10.1038/srep00088. Epub 2011 Sep 9. Erratum in: Sci Rep. 2012;2:911.


Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome.

Seufferheld MJ, Kim KM, Whitfield J, Valerio A, Caetano-Anollés G.

Biol Direct. 2011 Oct 5;6:50. doi: 10.1186/1745-6150-6-50.


Simulating chemistry using quantum computers.

Kassal I, Whitfield JD, Perdomo-Ortiz A, Yung MH, Aspuru-Guzik A.

Annu Rev Phys Chem. 2011;62:185-207. doi: 10.1146/annurev-physchem-032210-103512.


The p75 neurotrophin receptor is localized to primary cilia in adult murine hippocampal dentate gyrus granule cells.

Chakravarthy B, Gaudet C, Ménard M, Atkinson T, Chiarini A, Dal Prà I, Whitfield J.

Biochem Biophys Res Commun. 2010 Oct 22;401(3):458-62. doi: 10.1016/j.bbrc.2010.09.081. Epub 2010 Sep 25.


Amyloid-β(25-35), an amyloid-β(1-42) surrogate, and proinflammatory cytokines stimulate VEGF-A secretion by cultured, early passage, normoxic adult human cerebral astrocytes.

Chiarini A, Whitfield J, Bonafini C, Chakravarthy B, Armato U, Dal Prà I.

J Alzheimers Dis. 2010;21(3):915-26. doi: 10.3233/JAD-2010-100471.


Calphostin C, a remarkable multimodal photodynamic killer of neoplastic cells by selective nuclear lamin B1 destruction and apoptogenesis (Review).

Chiarini A, Whitfield JF, Pacchiana R, Marconi M, Armato U, Dal Prà I.

Oncol Rep. 2010 Apr;23(4):887-92. Review.


Amyloid-beta peptides stimulate the expression of the p75(NTR) neurotrophin receptor in SHSY5Y human neuroblastoma cells and AD transgenic mice.

Chakravarthy B, Gaudet C, Ménard M, Atkinson T, Brown L, Laferla FM, Armato U, Whitfield J.

J Alzheimers Dis. 2010;19(3):915-25. doi: 10.3233/JAD-2010-1288.


Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK; Nasonia Genome Working Group, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC 4th, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM Jr, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schlüns H, Schmitt T, Schneider M, Schüler A, Schurko AM, Shuker DM, Simões ZL, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA.

Science. 2010 Jan 15;327(5963):343-8. doi: 10.1126/science.1178028. Erratum in: Science. 2010 Mar 26;327(5973):1577.

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